Wall clock time and date at job start Wed Apr 15 2020 11:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30921 * 1 3 3 Si 1.86800 * 120.00035 * 2 1 4 4 H 1.48506 * 109.47123 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47114 * 299.99409 * 3 2 1 6 6 H 1.48494 * 109.47382 * 59.99459 * 3 2 1 7 7 C 1.39842 * 119.99985 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00012 * 195.45332 * 7 2 1 9 9 C 1.41101 * 119.99772 * 15.45177 * 7 2 1 10 10 C 1.40901 * 120.15391 * 25.26451 * 9 7 2 11 11 C 1.36302 * 119.84315 * 180.22858 * 10 9 7 12 12 C 1.39616 * 120.15301 * 359.48464 * 11 10 9 13 13 N 1.38789 * 119.84537 * 180.27559 * 12 11 10 14 14 C 1.38810 * 120.00168 * 173.55039 * 13 12 11 15 15 C 1.30609 * 118.04463 * 117.29448 * 14 13 12 16 16 C 1.50085 * 123.92210 * 180.16564 * 15 14 13 17 17 C 1.53018 * 110.19560 * 343.33467 * 16 15 14 18 18 F 1.39901 * 109.63860 * 289.70749 * 17 16 15 19 19 F 1.39898 * 109.63413 * 169.09648 * 17 16 15 20 20 C 1.53379 * 108.47753 * 49.40760 * 17 16 15 21 21 C 1.50084 * 118.03866 * 297.55780 * 14 13 12 22 22 C 1.39619 * 120.31146 * 0.25023 * 12 11 10 23 23 C 1.36298 * 120.15419 * 0.02562 * 22 12 11 24 24 H 0.97001 * 119.99268 * 0.02562 * 1 2 3 25 25 H 1.08007 * 120.08265 * 0.02562 * 10 9 7 26 26 H 1.08001 * 119.92366 * 179.75601 * 11 10 9 27 27 H 0.97005 * 119.99936 * 353.54732 * 13 12 11 28 28 H 1.08001 * 118.04151 * 0.44935 * 15 14 13 29 29 H 1.08998 * 109.49926 * 223.01180 * 16 15 14 30 30 H 1.09000 * 109.05120 * 103.38246 * 16 15 14 31 31 H 1.08997 * 109.63851 * 172.53294 * 20 17 16 32 32 H 1.08998 * 109.63738 * 51.92139 * 20 17 16 33 33 H 1.08995 * 109.36276 * 283.05334 * 21 14 13 34 34 H 1.09004 * 109.36151 * 42.64477 * 21 14 13 35 35 H 1.07995 * 119.92294 * 180.02562 * 22 12 11 36 36 H 1.08005 * 120.07975 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2432 1.6177 0.0000 4 1 3.7033 1.3464 -0.0006 5 1 1.8846 2.3964 -1.2126 6 1 1.8844 2.3965 1.2124 7 6 2.0084 -1.2111 0.0005 8 1 3.0591 -1.2279 0.2497 9 6 1.3411 -2.4111 -0.3245 10 6 0.1894 -2.3831 -1.1358 11 6 -0.4529 -3.5457 -1.4420 12 6 0.0340 -4.7632 -0.9626 13 7 -0.6218 -5.9437 -1.2831 14 6 -0.0689 -7.1648 -0.9226 15 6 -0.7358 -7.9193 -0.0908 16 6 -0.2610 -9.2596 0.3893 17 6 0.8550 -9.7810 -0.5186 18 9 0.3229 -10.1306 -1.7643 19 9 1.4566 -10.8984 0.0702 20 6 1.8963 -8.6690 -0.6965 21 6 1.2625 -7.5365 -1.5072 22 6 1.1778 -4.7989 -0.1628 23 6 1.8268 -3.6435 0.1558 24 1 -0.4849 0.8401 -0.0004 25 1 -0.1854 -1.4425 -1.5115 26 1 -1.3380 -3.5254 -2.0605 27 1 -1.4666 -5.9154 -1.7589 28 1 -1.6880 -7.5591 0.2696 29 1 -1.0923 -9.9645 0.3811 30 1 0.1179 -9.1595 1.4064 31 1 2.7628 -9.0605 -1.2294 32 1 2.2020 -8.2937 0.2801 33 1 1.1261 -7.8627 -2.5382 34 1 1.9203 -6.6675 -1.4894 35 1 1.5492 -5.7443 0.2042 36 1 2.7118 -3.6726 0.7742 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210032490.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:37 Heat of formation + Delta-G solvation = -68.462499 kcal Electronic energy + Delta-G solvation = -21148.849682 eV Core-core repulsion = 17654.030495 eV Total energy + Delta-G solvation = -3494.819187 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.113 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.98021 -47.00078 -39.09199 -37.16947 -34.63116 -32.97618 -31.18528 -29.96305 -29.12579 -27.69490 -24.66615 -23.53993 -22.27722 -21.06894 -20.45534 -18.45784 -17.55828 -17.26085 -16.60371 -16.45951 -16.26559 -15.21485 -15.03568 -14.22649 -14.09937 -13.83573 -13.41206 -13.33651 -13.08553 -12.90316 -12.73822 -12.57443 -12.33493 -12.10606 -11.98149 -11.80434 -11.46289 -11.22963 -11.12211 -10.90463 -10.57973 -10.41156 -9.79647 -9.58019 -9.39523 -8.97339 -8.35514 -7.58588 -6.72253 -6.53386 -4.15577 2.23446 2.84284 3.01794 3.10774 3.15874 3.27166 3.68934 3.97398 3.98880 4.06690 4.36682 4.54575 4.67712 4.98079 5.07692 5.29782 5.42204 5.56150 5.62582 5.70996 5.72902 5.92344 5.99303 6.18683 6.20605 6.37808 6.83145 6.90628 7.01788 7.10708 7.24975 7.51439 7.58830 7.72979 8.05807 8.24180 8.42289 8.54256 8.68171 8.96332 9.03712 10.28244 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.043715 B = 0.003530 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.357423 B = 7929.464742 C = 8226.348474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.073 3.927 3 Si 0.905 3.095 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.276 1.276 7 C -0.463 4.463 8 H 0.074 0.926 9 C 0.082 3.918 10 C -0.128 4.128 11 C -0.151 4.151 12 C 0.070 3.930 13 N -0.710 5.710 14 C 0.162 3.838 15 C -0.223 4.223 16 C -0.105 4.105 17 C 0.285 3.715 18 F -0.198 7.198 19 F -0.204 7.204 20 C -0.151 4.151 21 C -0.103 4.103 22 C -0.145 4.145 23 C -0.193 4.193 24 H 0.277 0.723 25 H 0.122 0.878 26 H 0.088 0.912 27 H 0.394 0.606 28 H 0.117 0.883 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.169 -13.143 -1.222 13.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.142 4.142 3 Si 0.730 3.270 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.202 1.202 7 C -0.494 4.494 8 H 0.093 0.907 9 C 0.079 3.921 10 C -0.147 4.147 11 C -0.173 4.173 12 C -0.024 4.024 13 N -0.339 5.339 14 C 0.066 3.934 15 C -0.245 4.245 16 C -0.144 4.144 17 C 0.249 3.751 18 F -0.179 7.179 19 F -0.185 7.185 20 C -0.190 4.190 21 C -0.142 4.142 22 C -0.167 4.167 23 C -0.214 4.214 24 H 0.088 0.912 25 H 0.140 0.860 26 H 0.106 0.894 27 H 0.229 0.771 28 H 0.135 0.865 29 H 0.106 0.894 30 H 0.118 0.882 31 H 0.108 0.892 32 H 0.116 0.884 33 H 0.101 0.899 34 H 0.119 0.881 35 H 0.109 0.891 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.237 -13.016 -1.167 13.070 hybrid contribution -0.131 0.643 -0.189 0.683 sum -0.368 -12.373 -1.356 12.453 Atomic orbital electron populations 1.69851 1.07379 1.28672 1.37383 1.25834 0.94728 1.01064 0.92589 0.86310 0.80915 0.81325 0.78408 1.18566 1.19898 1.20165 1.19450 0.97142 0.91041 1.41743 0.90746 1.17553 0.92205 0.92083 0.90280 1.20973 0.97944 0.96397 0.99436 1.20079 1.01018 0.91981 1.04206 1.17312 0.96776 0.84498 1.03843 1.41418 1.25348 1.01342 1.65743 1.18491 0.93875 0.86793 0.94254 1.21918 1.03902 0.97047 1.01603 1.21152 0.97239 0.96504 0.99482 1.21166 0.92481 0.82643 0.78858 1.92991 1.87515 1.93143 1.44243 1.92991 1.84959 1.56327 1.84234 1.22558 0.97639 0.94733 1.04027 1.20789 0.95627 0.98446 0.99302 1.19954 0.97156 0.97183 1.02402 1.20584 1.02595 0.92692 1.05484 0.91231 0.86000 0.89359 0.77148 0.86468 0.89412 0.88163 0.89221 0.88362 0.89883 0.88133 0.89059 0.88934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.82 10.85 55.54 0.60 -20.22 16 2 C 0.07 1.84 5.18 -17.34 -0.09 1.75 16 3 Si 0.91 18.73 29.59 -169.99 -5.03 13.70 16 4 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.46 -12.21 9.04 -37.90 -0.34 -12.55 16 8 H 0.07 1.90 7.89 -52.49 -0.41 1.48 16 9 C 0.08 2.13 5.58 -106.79 -0.60 1.54 16 10 C -0.13 -3.23 8.63 -39.27 -0.34 -3.57 16 11 C -0.15 -3.40 9.82 -39.76 -0.39 -3.79 16 12 C 0.07 1.47 6.47 -83.68 -0.54 0.92 16 13 N -0.71 -12.00 5.23 -7.33 -0.04 -12.04 16 14 C 0.16 2.40 4.85 -81.34 -0.39 2.01 16 15 C -0.22 -2.96 9.58 -36.21 -0.35 -3.31 16 16 C -0.11 -1.17 5.61 -28.17 -0.16 -1.33 16 17 C 0.28 3.41 2.15 -26.53 -0.06 3.36 16 18 F -0.20 -2.67 16.33 2.25 0.04 -2.63 16 19 F -0.20 -2.54 17.08 2.25 0.04 -2.50 16 20 C -0.15 -1.73 5.60 -26.52 -0.15 -1.88 16 21 C -0.10 -1.39 4.98 -28.17 -0.14 -1.53 16 22 C -0.15 -3.11 8.06 -39.77 -0.32 -3.43 16 23 C -0.19 -4.60 9.74 -39.27 -0.38 -4.99 16 24 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 25 H 0.12 3.21 6.11 -52.48 -0.32 2.89 16 26 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 27 H 0.39 6.00 8.82 -40.82 -0.36 5.64 16 28 H 0.12 1.56 8.05 -52.49 -0.42 1.14 16 29 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.10 1.06 8.12 -51.93 -0.42 0.64 16 33 H 0.08 1.09 7.93 -51.93 -0.41 0.68 16 34 H 0.10 1.51 6.09 -51.93 -0.32 1.20 16 35 H 0.09 1.74 6.01 -52.49 -0.32 1.42 16 36 H 0.09 2.08 8.06 -52.48 -0.42 1.66 16 LS Contribution 303.55 15.07 4.57 4.57 Total: -1.00 -27.20 303.55 -8.29 -35.49 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -4.23 Total: 10.44 kcal Atomic # 6 Polarization: -22.56 SS G_CDS: -4.25 Total: -26.81 kcal Atomic # 7 Polarization: -32.82 SS G_CDS: 0.56 Total: -32.26 kcal Atomic # 9 Polarization: -5.21 SS G_CDS: 0.08 Total: -5.14 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.70 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -27.20 -8.29 -35.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210032490.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.975 kcal (2) G-P(sol) polarization free energy of solvation -27.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds