Wall clock time and date at job start Wed Apr 15 2020 11:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30892 * 1 3 3 Si 1.86799 * 119.99853 * 2 1 4 4 H 1.48499 * 109.47324 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.46979 * 119.99918 * 3 2 1 6 6 H 1.48497 * 109.47238 * 239.99879 * 3 2 1 7 7 C 1.39897 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00077 * 154.25772 * 7 2 1 9 9 C 1.41009 * 120.00271 * 334.26058 * 7 2 1 10 10 C 1.40742 * 120.30709 * 334.65173 * 9 7 2 11 11 C 1.36420 * 119.95148 * 179.97438 * 10 9 7 12 12 C 1.38934 * 120.60878 * 0.02562 * 11 10 9 13 13 C 1.38104 * 120.63714 * 359.96175 * 12 11 10 14 14 C 1.38827 * 120.02155 * 359.77729 * 13 12 11 15 15 N 1.38657 * 120.30172 * 180.25541 * 14 13 12 16 16 C 1.38795 * 119.99986 * 254.26447 * 15 14 13 17 17 C 1.30622 * 118.04590 * 5.00764 * 16 15 14 18 18 C 1.50078 * 123.92072 * 180.42645 * 17 16 15 19 19 C 1.53022 * 110.14040 * 342.86029 * 18 17 16 20 20 F 1.39904 * 109.63658 * 169.30971 * 19 18 17 21 21 F 1.39896 * 109.63485 * 289.92255 * 19 18 17 22 22 C 1.53378 * 108.47201 * 49.61375 * 19 18 17 23 23 C 1.50085 * 118.03998 * 184.74262 * 16 15 14 24 24 H 0.97008 * 119.99823 * 174.32501 * 1 2 3 25 25 H 1.08002 * 120.02604 * 359.95685 * 10 9 7 26 26 H 1.08002 * 119.69577 * 180.02562 * 11 10 9 27 27 H 1.08005 * 119.68304 * 179.97438 * 12 11 10 28 28 H 1.08001 * 119.98969 * 180.02562 * 13 12 11 29 29 H 0.96996 * 119.99783 * 74.26038 * 15 14 13 30 30 H 1.07995 * 118.03909 * 0.43508 * 17 16 15 31 31 H 1.08998 * 109.36641 * 103.06791 * 18 17 16 32 32 H 1.09004 * 109.35533 * 222.66389 * 18 17 16 33 33 H 1.09003 * 109.63650 * 51.93043 * 22 19 18 34 34 H 1.09008 * 109.63447 * 172.32976 * 22 19 18 35 35 H 1.09003 * 109.35830 * 283.04826 * 23 16 15 36 36 H 1.08992 * 109.35948 * 42.64406 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 1.2779 2.7465 0.0006 5 1 3.0966 1.6964 1.2125 6 1 3.0966 1.6965 -1.2124 7 6 2.0084 -1.2115 0.0005 8 1 3.0080 -1.2581 -0.4057 9 6 1.4084 -2.3719 0.5314 10 6 0.3980 -2.2669 1.5055 11 6 -0.1780 -3.3943 2.0137 12 6 0.2236 -4.6513 1.5792 13 6 1.2125 -4.7831 0.6243 14 6 1.8127 -3.6533 0.0853 15 7 2.8025 -3.7787 -0.8776 16 6 4.1295 -3.5479 -0.5429 17 6 4.4150 -3.3127 0.7099 18 6 5.8009 -3.0376 1.2157 19 6 6.8373 -3.4841 0.1821 20 9 8.1011 -3.0081 0.5477 21 9 6.8591 -4.8811 0.1115 22 6 6.4433 -2.9052 -1.1825 23 6 5.1517 -3.5895 -1.6411 24 1 -0.4850 -0.8360 -0.0831 25 1 0.0790 -1.2945 1.8506 26 1 -0.9533 -3.3089 2.7608 27 1 -0.2423 -5.5340 1.9920 28 1 1.5163 -5.7654 0.2938 29 1 2.5674 -4.0278 -1.7851 30 1 3.6052 -3.3165 1.4244 31 1 5.9126 -1.9694 1.4011 32 1 5.9607 -3.5826 2.1461 33 1 6.2813 -1.8311 -1.0917 34 1 7.2374 -3.0961 -1.9044 35 1 5.3610 -4.6273 -1.9008 36 1 4.7620 -3.0714 -2.5172 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210033964.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:40 Heat of formation + Delta-G solvation = -75.438923 kcal Electronic energy + Delta-G solvation = -22042.959901 eV Core-core repulsion = 18547.838194 eV Total energy + Delta-G solvation = -3495.121707 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.113 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.71288 -46.73443 -38.95901 -37.07830 -34.15709 -33.77642 -30.78536 -29.33798 -29.23589 -27.03617 -24.91538 -23.53604 -21.99239 -20.99592 -20.44382 -18.18258 -17.77360 -17.26987 -16.54334 -16.15088 -15.83049 -14.91267 -14.61865 -14.49753 -14.00605 -13.83241 -13.58691 -13.06747 -13.00240 -12.60868 -12.54334 -12.35418 -12.16362 -12.07470 -11.85804 -11.66458 -11.29246 -11.15756 -10.91324 -10.74945 -10.46600 -10.22818 -9.98331 -9.74924 -9.34648 -8.95320 -7.70647 -7.63493 -7.20198 -6.58536 -4.44740 2.65626 2.76487 3.11676 3.18679 3.23859 3.32013 3.95425 3.96747 4.24608 4.42213 4.52044 4.62271 4.78261 5.23979 5.32137 5.41839 5.54376 5.71604 5.81650 5.90010 5.97028 6.08435 6.18409 6.21072 6.29121 6.50289 6.88863 6.99724 7.17944 7.30499 7.38902 7.54469 7.72460 7.78955 7.89895 8.10469 8.17758 8.51247 8.60810 8.82778 9.00223 9.98966 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.015232 B = 0.007192 C = 0.005496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.742504 B = 3892.026901 C = 5093.385759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.037 3.963 3 Si 1.060 2.940 4 H -0.275 1.275 5 H -0.273 1.273 6 H -0.276 1.276 7 C -0.496 4.496 8 H 0.082 0.918 9 C 0.099 3.901 10 C -0.214 4.214 11 C -0.084 4.084 12 C -0.255 4.255 13 C -0.079 4.079 14 C 0.011 3.989 15 N -0.673 5.673 16 C 0.169 3.831 17 C -0.292 4.292 18 C -0.086 4.086 19 C 0.283 3.717 20 F -0.208 7.208 21 F -0.199 7.199 22 C -0.147 4.147 23 C -0.082 4.082 24 H 0.299 0.701 25 H 0.105 0.895 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.385 0.615 30 H 0.122 0.878 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.717 -2.857 -2.538 9.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.185 4.185 3 Si 0.883 3.117 4 H -0.200 1.200 5 H -0.199 1.199 6 H -0.202 1.202 7 C -0.524 4.524 8 H 0.100 0.900 9 C 0.095 3.905 10 C -0.234 4.234 11 C -0.103 4.103 12 C -0.275 4.275 13 C -0.099 4.099 14 C -0.083 4.083 15 N -0.295 5.295 16 C 0.067 3.933 17 C -0.320 4.320 18 C -0.124 4.124 19 C 0.247 3.753 20 F -0.189 7.189 21 F -0.180 7.180 22 C -0.185 4.185 23 C -0.120 4.120 24 H 0.113 0.887 25 H 0.123 0.877 26 H 0.106 0.894 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.218 0.782 30 H 0.140 0.860 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.117 0.883 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.409 -1.200 -2.380 8.821 hybrid contribution 0.086 -1.886 -0.245 1.904 sum 8.495 -3.086 -2.625 9.412 Atomic orbital electron populations 1.70486 1.08279 1.34311 1.28621 1.27012 0.95644 1.04370 0.91462 0.83706 0.75788 0.74066 0.78093 1.19951 1.19865 1.20172 1.20463 1.03364 0.93521 1.35052 0.89951 1.17832 0.90408 0.92125 0.90158 1.20851 1.03659 0.97248 1.01671 1.20382 0.98268 0.93185 0.98420 1.20144 1.05282 0.95835 1.06193 1.20814 0.96897 0.96143 0.96079 1.17194 0.98798 0.92164 1.00138 1.41012 1.01969 1.75893 1.10668 1.18573 0.84773 0.96690 0.93216 1.20926 0.95861 1.19085 0.96107 1.20894 0.92006 1.02551 0.96969 1.21257 0.80472 0.75529 0.98045 1.92970 1.44516 1.88142 1.93292 1.92972 1.96660 1.30978 1.97422 1.22507 0.98790 1.02665 0.94573 1.20360 0.92503 1.01614 0.97546 0.88717 0.87705 0.89387 0.89336 0.89260 0.78198 0.86013 0.89479 0.90303 0.88303 0.89585 0.90000 0.89645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.33 12.32 55.55 0.68 -19.64 16 2 C 0.04 0.91 4.93 -17.33 -0.09 0.82 16 3 Si 1.06 21.01 30.00 -169.99 -5.10 15.91 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 6 H -0.28 -5.19 7.11 56.52 0.40 -4.79 16 7 C -0.50 -12.29 8.21 -37.91 -0.31 -12.60 16 8 H 0.08 2.02 6.34 -52.49 -0.33 1.69 16 9 C 0.10 2.45 4.57 -106.63 -0.49 1.97 16 10 C -0.21 -5.28 7.90 -39.29 -0.31 -5.59 16 11 C -0.08 -1.89 9.96 -39.98 -0.40 -2.29 16 12 C -0.25 -5.53 10.03 -39.37 -0.40 -5.93 16 13 C -0.08 -1.73 9.96 -39.41 -0.39 -2.12 16 14 C 0.01 0.24 4.40 -83.29 -0.37 -0.13 16 15 N -0.67 -13.14 4.86 -7.06 -0.03 -13.18 16 16 C 0.17 3.06 5.32 -81.35 -0.43 2.62 16 17 C -0.29 -5.60 8.32 -36.22 -0.30 -5.90 16 18 C -0.09 -1.39 5.61 -28.17 -0.16 -1.54 16 19 C 0.28 4.23 2.15 -26.52 -0.06 4.17 16 20 F -0.21 -3.13 17.09 2.25 0.04 -3.09 16 21 F -0.20 -3.23 16.31 2.25 0.04 -3.20 16 22 C -0.15 -1.91 5.62 -26.43 -0.15 -2.06 16 23 C -0.08 -1.15 5.56 -28.08 -0.16 -1.31 16 24 H 0.30 7.87 6.70 -40.82 -0.27 7.60 16 25 H 0.10 2.68 6.49 -52.49 -0.34 2.34 16 26 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 27 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 28 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 29 H 0.38 6.72 8.81 -40.82 -0.36 6.36 16 30 H 0.12 2.77 5.99 -52.49 -0.31 2.46 16 31 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 32 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.10 1.25 8.12 -51.93 -0.42 0.83 16 34 H 0.09 0.93 8.14 -51.92 -0.42 0.51 16 35 H 0.08 1.07 7.92 -51.93 -0.41 0.66 16 36 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 301.56 15.07 4.54 4.54 Total: -1.00 -26.38 301.56 -8.04 -34.42 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -4.21 Total: 14.11 kcal Atomic # 6 Polarization: -25.88 SS G_CDS: -4.00 Total: -29.88 kcal Atomic # 7 Polarization: -33.47 SS G_CDS: 0.65 Total: -32.82 kcal Atomic # 9 Polarization: -6.36 SS G_CDS: 0.08 Total: -6.29 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.10 Total: 15.91 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -26.38 -8.04 -34.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210033964.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.020 kcal (2) G-P(sol) polarization free energy of solvation -26.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds