Wall clock time and date at job start Wed Apr 15 2020 11:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30892 * 1 3 3 Si 1.86799 * 119.99853 * 2 1 4 4 H 1.48499 * 109.47324 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.46979 * 119.99918 * 3 2 1 6 6 H 1.48497 * 109.47238 * 239.99879 * 3 2 1 7 7 C 1.39897 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00077 * 154.25772 * 7 2 1 9 9 C 1.41009 * 120.00271 * 334.26058 * 7 2 1 10 10 C 1.40742 * 120.30709 * 334.65173 * 9 7 2 11 11 C 1.36420 * 119.95148 * 179.97438 * 10 9 7 12 12 C 1.38934 * 120.60878 * 0.02562 * 11 10 9 13 13 C 1.38104 * 120.63714 * 359.96175 * 12 11 10 14 14 C 1.38827 * 120.02155 * 359.77729 * 13 12 11 15 15 N 1.38657 * 120.30172 * 180.25541 * 14 13 12 16 16 C 1.38795 * 119.99986 * 254.26447 * 15 14 13 17 17 C 1.30622 * 118.04590 * 5.00764 * 16 15 14 18 18 C 1.50078 * 123.92072 * 180.42645 * 17 16 15 19 19 C 1.53022 * 110.14040 * 342.86029 * 18 17 16 20 20 F 1.39904 * 109.63658 * 169.30971 * 19 18 17 21 21 F 1.39896 * 109.63485 * 289.92255 * 19 18 17 22 22 C 1.53378 * 108.47201 * 49.61375 * 19 18 17 23 23 C 1.50085 * 118.03998 * 184.74262 * 16 15 14 24 24 H 0.97008 * 119.99823 * 174.32501 * 1 2 3 25 25 H 1.08002 * 120.02604 * 359.95685 * 10 9 7 26 26 H 1.08002 * 119.69577 * 180.02562 * 11 10 9 27 27 H 1.08005 * 119.68304 * 179.97438 * 12 11 10 28 28 H 1.08001 * 119.98969 * 180.02562 * 13 12 11 29 29 H 0.96996 * 119.99783 * 74.26038 * 15 14 13 30 30 H 1.07995 * 118.03909 * 0.43508 * 17 16 15 31 31 H 1.08998 * 109.36641 * 103.06791 * 18 17 16 32 32 H 1.09004 * 109.35533 * 222.66389 * 18 17 16 33 33 H 1.09003 * 109.63650 * 51.93043 * 22 19 18 34 34 H 1.09008 * 109.63447 * 172.32976 * 22 19 18 35 35 H 1.09003 * 109.35830 * 283.04826 * 23 16 15 36 36 H 1.08992 * 109.35948 * 42.64406 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 1.2779 2.7465 0.0006 5 1 3.0966 1.6964 1.2125 6 1 3.0966 1.6965 -1.2124 7 6 2.0084 -1.2115 0.0005 8 1 3.0080 -1.2581 -0.4057 9 6 1.4084 -2.3719 0.5314 10 6 0.3980 -2.2669 1.5055 11 6 -0.1780 -3.3943 2.0137 12 6 0.2236 -4.6513 1.5792 13 6 1.2125 -4.7831 0.6243 14 6 1.8127 -3.6533 0.0853 15 7 2.8025 -3.7787 -0.8776 16 6 4.1295 -3.5479 -0.5429 17 6 4.4150 -3.3127 0.7099 18 6 5.8009 -3.0376 1.2157 19 6 6.8373 -3.4841 0.1821 20 9 8.1011 -3.0081 0.5477 21 9 6.8591 -4.8811 0.1115 22 6 6.4433 -2.9052 -1.1825 23 6 5.1517 -3.5895 -1.6411 24 1 -0.4850 -0.8360 -0.0831 25 1 0.0790 -1.2945 1.8506 26 1 -0.9533 -3.3089 2.7608 27 1 -0.2423 -5.5340 1.9920 28 1 1.5163 -5.7654 0.2938 29 1 2.5674 -4.0278 -1.7851 30 1 3.6052 -3.3165 1.4244 31 1 5.9126 -1.9694 1.4011 32 1 5.9607 -3.5826 2.1461 33 1 6.2813 -1.8311 -1.0917 34 1 7.2374 -3.0961 -1.9044 35 1 5.3610 -4.6273 -1.9008 36 1 4.7620 -3.0714 -2.5172 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210033964.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:40 Heat of formation + Delta-G solvation = -87.198953 kcal Electronic energy + Delta-G solvation = -22043.469854 eV Core-core repulsion = 18547.838194 eV Total energy + Delta-G solvation = -3495.631661 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.113 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.90670 -47.93251 -40.57158 -38.60110 -35.84636 -35.37956 -32.02421 -31.15799 -30.80357 -28.57935 -26.72106 -24.77695 -23.36145 -22.81481 -22.01928 -19.82913 -19.28707 -18.51155 -17.88877 -17.65811 -17.12517 -16.52079 -16.21869 -16.10454 -15.59222 -15.06193 -14.87876 -14.65468 -14.26485 -14.20461 -13.89187 -13.85663 -13.73776 -13.35340 -13.17172 -12.99059 -12.89759 -12.66444 -12.43765 -12.37117 -12.00967 -11.81274 -11.55419 -11.16288 -11.02787 -10.70069 -9.51740 -9.47002 -9.06374 -8.13465 -6.33554 0.87160 0.95842 1.50160 1.64336 1.74677 1.77566 2.32802 2.70867 2.80499 2.88068 3.18687 3.50839 3.55773 3.58979 4.01350 4.17368 4.36595 4.43315 4.43955 4.61013 4.69378 4.72454 4.78616 4.83261 4.94327 5.03081 5.07190 5.23417 5.44037 5.57739 5.71622 5.85020 5.92184 6.00423 6.05468 6.26648 6.38268 6.73046 6.94352 7.11342 7.34960 8.08098 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.015232 B = 0.007192 C = 0.005496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.742504 B = 3892.026901 C = 5093.385759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.002 3.998 3 Si 1.105 2.895 4 H -0.277 1.277 5 H -0.267 1.267 6 H -0.254 1.254 7 C -0.516 4.516 8 H 0.081 0.919 9 C 0.076 3.924 10 C -0.238 4.238 11 C -0.092 4.092 12 C -0.249 4.249 13 C -0.091 4.091 14 C 0.017 3.983 15 N -0.676 5.676 16 C 0.170 3.830 17 C -0.308 4.308 18 C -0.085 4.085 19 C 0.285 3.715 20 F -0.207 7.207 21 F -0.207 7.207 22 C -0.142 4.142 23 C -0.078 4.078 24 H 0.283 0.717 25 H 0.085 0.915 26 H 0.109 0.891 27 H 0.117 0.883 28 H 0.111 0.889 29 H 0.395 0.605 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.103 0.897 34 H 0.117 0.883 35 H 0.097 0.903 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.386 -3.393 -3.657 11.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.214 4.214 3 Si 0.924 3.076 4 H -0.202 1.202 5 H -0.192 1.192 6 H -0.178 1.178 7 C -0.544 4.544 8 H 0.099 0.901 9 C 0.071 3.929 10 C -0.258 4.258 11 C -0.110 4.110 12 C -0.269 4.269 13 C -0.111 4.111 14 C -0.077 4.077 15 N -0.300 5.300 16 C 0.068 3.932 17 C -0.336 4.336 18 C -0.123 4.123 19 C 0.249 3.751 20 F -0.188 7.188 21 F -0.188 7.188 22 C -0.180 4.180 23 C -0.115 4.115 24 H 0.095 0.905 25 H 0.103 0.897 26 H 0.127 0.873 27 H 0.135 0.865 28 H 0.129 0.871 29 H 0.230 0.770 30 H 0.098 0.902 31 H 0.111 0.889 32 H 0.096 0.904 33 H 0.122 0.878 34 H 0.135 0.865 35 H 0.115 0.885 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 10.090 -1.761 -3.507 10.826 hybrid contribution -0.476 -1.896 0.182 1.964 sum 9.614 -3.658 -3.325 10.811 Atomic orbital electron populations 1.70596 1.09056 1.33197 1.31403 1.28254 0.95645 1.07356 0.90141 0.83144 0.74951 0.70401 0.79147 1.20174 1.19200 1.17843 1.20521 1.03366 0.94190 1.36353 0.90134 1.18147 0.90843 0.93328 0.90542 1.20843 1.04939 0.97159 1.02816 1.20645 0.98616 0.93033 0.98755 1.20526 1.04589 0.96395 1.05355 1.21131 0.96943 0.96930 0.96126 1.17361 0.98735 0.91713 0.99889 1.41062 1.02183 1.76053 1.10669 1.19067 0.84820 0.95103 0.94194 1.20838 0.96224 1.20665 0.95901 1.20841 0.91032 1.02974 0.97485 1.21247 0.79958 0.75151 0.98694 1.92972 1.44336 1.88083 1.93422 1.92959 1.96674 1.31695 1.97462 1.22550 0.99011 1.02630 0.93813 1.20434 0.91648 1.03042 0.96409 0.90453 0.89698 0.87321 0.86522 0.87122 0.76962 0.90248 0.88917 0.90436 0.87803 0.86484 0.88481 0.87822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.34 12.32 21.82 0.27 -43.07 16 2 C 0.00 0.12 4.93 85.23 0.42 0.54 16 3 Si 1.11 42.32 30.00 68.60 2.06 44.38 16 4 H -0.28 -10.60 7.11 99.48 0.71 -9.90 16 5 H -0.27 -9.85 7.11 99.48 0.71 -9.15 16 6 H -0.25 -8.77 7.11 99.48 0.71 -8.07 16 7 C -0.52 -26.05 8.21 23.35 0.19 -25.86 16 8 H 0.08 3.98 6.34 -2.91 -0.02 3.96 16 9 C 0.08 3.83 4.57 -21.17 -0.10 3.74 16 10 C -0.24 -12.09 7.90 22.46 0.18 -11.91 16 11 C -0.09 -4.17 9.96 22.01 0.22 -3.95 16 12 C -0.25 -10.52 10.03 22.40 0.22 -10.30 16 13 C -0.09 -3.90 9.96 22.38 0.22 -3.67 16 14 C 0.02 0.78 4.40 39.03 0.17 0.95 16 15 N -0.68 -25.77 4.86 -176.26 -0.86 -26.63 16 16 C 0.17 5.90 5.32 41.61 0.22 6.12 16 17 C -0.31 -11.77 8.32 25.84 0.22 -11.55 16 18 C -0.08 -2.67 5.61 29.66 0.17 -2.51 16 19 C 0.29 7.87 2.15 30.73 0.07 7.94 16 20 F -0.21 -5.71 17.09 44.97 0.77 -4.95 16 21 F -0.21 -6.24 16.31 44.97 0.73 -5.51 16 22 C -0.14 -3.19 5.62 30.79 0.17 -3.02 16 23 C -0.08 -1.93 5.56 29.72 0.17 -1.77 16 24 H 0.28 15.62 6.70 -92.70 -0.62 15.00 16 25 H 0.08 4.58 6.49 -2.91 -0.02 4.56 16 26 H 0.11 4.35 8.06 -2.91 -0.02 4.32 16 27 H 0.12 4.24 8.06 -2.91 -0.02 4.21 16 28 H 0.11 4.20 8.06 -2.91 -0.02 4.18 16 29 H 0.40 13.24 8.81 -92.71 -0.82 12.42 16 30 H 0.08 3.72 5.99 -2.91 -0.02 3.71 16 31 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 32 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 33 H 0.10 2.28 8.12 -2.39 -0.02 2.26 16 34 H 0.12 1.98 8.14 -2.38 -0.02 1.96 16 35 H 0.10 2.18 7.92 -2.39 -0.02 2.16 16 36 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -58.00 301.56 5.95 -52.05 By element: Atomic # 1 Polarization: 38.54 SS G_CDS: 0.44 Total: 38.98 kcal Atomic # 6 Polarization: -57.79 SS G_CDS: 2.54 Total: -55.25 kcal Atomic # 7 Polarization: -69.11 SS G_CDS: -0.59 Total: -69.70 kcal Atomic # 9 Polarization: -11.96 SS G_CDS: 1.50 Total: -10.46 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.06 Total: 44.38 kcal Total: -58.00 5.95 -52.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210033964.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.153 kcal (2) G-P(sol) polarization free energy of solvation -57.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds