Wall clock time and date at job start Wed Apr 15 2020 11:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30924 * 1 3 3 Si 1.86797 * 120.00091 * 2 1 4 4 H 1.48505 * 109.47083 * 275.24971 * 3 2 1 5 5 H 1.48498 * 109.47407 * 35.24996 * 3 2 1 6 6 H 1.48496 * 109.47212 * 155.25133 * 3 2 1 7 7 C 1.39851 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99486 * 342.11590 * 7 2 1 9 9 C 1.40972 * 119.99998 * 162.11877 * 7 2 1 10 10 C 1.40751 * 120.31549 * 332.13653 * 9 7 2 11 11 C 1.36405 * 119.95842 * 180.02562 * 10 9 7 12 12 C 1.38968 * 120.62398 * 359.97438 * 11 10 9 13 13 C 1.38045 * 120.64465 * 359.74554 * 12 11 10 14 14 C 1.38917 * 120.01312 * 0.51107 * 13 12 11 15 15 N 1.38439 * 120.30763 * 179.76444 * 14 13 12 16 16 C 1.40210 * 119.99728 * 40.53682 * 15 14 13 17 17 C 1.34889 * 126.61881 * 6.12779 * 16 15 14 18 18 N 1.37402 * 109.72611 * 180.02562 * 17 16 15 19 19 H 0.96998 * 124.96441 * 180.02562 * 18 17 16 20 20 C 1.37438 * 110.06453 * 359.97438 * 18 17 16 21 21 N 1.32690 * 133.05075 * 179.97438 * 20 18 17 22 22 C 1.31584 * 121.67889 * 180.02562 * 21 20 18 23 23 C 1.38657 * 121.57170 * 0.02562 * 22 21 20 24 24 C 1.38222 * 119.39954 * 359.97438 * 23 22 21 25 25 C 1.39619 * 118.05680 * 0.02562 * 24 23 22 26 26 H 0.97003 * 120.00266 * 0.02562 * 1 2 3 27 27 H 1.08001 * 120.01985 * 0.04618 * 10 9 7 28 28 H 1.07993 * 119.68572 * 179.97438 * 11 10 9 29 29 H 1.07995 * 119.67835 * 179.97438 * 12 11 10 30 30 H 1.07999 * 119.99708 * 180.25436 * 13 12 11 31 31 H 0.97001 * 120.00569 * 220.52994 * 15 14 13 32 32 H 1.07999 * 125.13697 * 0.03897 * 17 16 15 33 33 H 1.07997 * 119.21517 * 180.02562 * 22 21 20 34 34 H 1.08009 * 120.29733 * 179.97438 * 23 22 21 35 35 H 1.08007 * 120.97203 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2433 1.6177 0.0000 4 1 2.3798 2.1104 -1.3942 5 1 1.5007 2.6181 0.8080 6 1 3.5918 1.4106 0.5861 7 6 2.0085 -1.2111 -0.0005 8 1 1.5076 -2.1239 0.2863 9 6 3.3671 -1.2405 -0.3754 10 6 3.8784 -0.2809 -1.2692 11 6 5.1941 -0.3164 -1.6274 12 6 6.0405 -1.2934 -1.1174 13 6 5.5673 -2.2433 -0.2346 14 6 4.2307 -2.2354 0.1441 15 7 3.7485 -3.1881 1.0252 16 6 4.5198 -3.5749 2.1304 17 6 5.6881 -3.0295 2.5267 18 7 6.1440 -3.6755 3.6505 19 1 6.9651 -3.4613 4.1203 20 6 5.2658 -4.6690 4.0121 21 7 5.2559 -5.5533 5.0013 22 6 4.2796 -6.4247 5.1395 23 6 3.2107 -6.4632 4.2572 24 6 3.1655 -5.5664 3.2064 25 6 4.2119 -4.6509 3.0790 26 1 -0.4851 0.8401 -0.0004 27 1 3.2294 0.4832 -1.6710 28 1 5.5816 0.4218 -2.3139 29 1 7.0795 -1.3075 -1.4116 30 1 6.2352 -2.9954 0.1585 31 1 2.8771 -3.5880 0.8781 32 1 6.1895 -2.2089 2.0351 33 1 4.3117 -7.1265 5.9597 34 1 2.4205 -7.1875 4.3899 35 1 2.3447 -5.5736 2.5044 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210941649.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:44 Heat of formation + Delta-G solvation = 98.184187 kcal Electronic energy + Delta-G solvation = -20458.790369 eV Core-core repulsion = 17421.886711 eV Total energy + Delta-G solvation = -3036.903658 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.17742 -38.47927 -37.34644 -34.74399 -33.67987 -32.28359 -30.58123 -29.72102 -28.61741 -27.37943 -25.04025 -23.41556 -22.41967 -21.74550 -20.71743 -19.27307 -18.06127 -17.49590 -16.99599 -16.09181 -15.85285 -14.96594 -14.80802 -14.65422 -14.32877 -14.01871 -13.60535 -13.18650 -13.02339 -12.72446 -12.63990 -12.09846 -12.06027 -11.77721 -11.61745 -11.05025 -10.89942 -10.72140 -10.38072 -9.97955 -9.76552 -9.44887 -9.26140 -9.11793 -8.19442 -7.76536 -7.72319 -7.01591 -6.31417 -4.44760 1.24101 1.59961 2.48063 2.56953 3.06298 3.12000 3.15849 3.28346 3.33123 3.92847 4.11337 4.16359 4.46389 4.74963 4.96898 5.07466 5.32304 5.35972 5.41768 5.77708 5.89878 5.95852 6.03595 6.05536 6.25823 6.43444 6.48592 6.56137 6.72914 6.80050 7.06879 7.11518 7.20750 7.41619 7.52871 7.61259 7.77507 7.94511 8.13656 8.25462 8.30123 8.54631 8.68323 8.78437 10.00544 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.020351 B = 0.005395 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.548919 B = 5189.097810 C = 5979.313060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.084 3.916 3 Si 0.914 3.086 4 H -0.271 1.271 5 H -0.293 1.293 6 H -0.244 1.244 7 C -0.439 4.439 8 H 0.088 0.912 9 C 0.076 3.924 10 C -0.224 4.224 11 C -0.093 4.093 12 C -0.223 4.223 13 C -0.118 4.118 14 C 0.064 3.936 15 N -0.645 5.645 16 C 0.145 3.855 17 C -0.049 4.049 18 N -0.573 5.573 19 H 0.416 0.584 20 C 0.301 3.699 21 N -0.510 5.510 22 C 0.139 3.861 23 C -0.223 4.223 24 C -0.015 4.015 25 C -0.173 4.173 26 H 0.285 0.715 27 H 0.101 0.899 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.102 0.898 31 H 0.404 0.596 32 H 0.178 0.822 33 H 0.155 0.845 34 H 0.132 0.868 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.579 -6.601 5.504 10.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.135 4.135 3 Si 0.741 3.259 4 H -0.197 1.197 5 H -0.221 1.221 6 H -0.167 1.167 7 C -0.467 4.467 8 H 0.106 0.894 9 C 0.072 3.928 10 C -0.244 4.244 11 C -0.112 4.112 12 C -0.243 4.243 13 C -0.139 4.139 14 C -0.032 4.032 15 N -0.267 5.267 16 C 0.038 3.962 17 C -0.177 4.177 18 N -0.181 5.181 19 H 0.253 0.747 20 C 0.065 3.935 21 N -0.225 5.225 22 C -0.028 4.028 23 C -0.245 4.245 24 C -0.041 4.041 25 C -0.184 4.184 26 H 0.096 0.904 27 H 0.119 0.881 28 H 0.110 0.890 29 H 0.112 0.888 30 H 0.120 0.880 31 H 0.240 0.760 32 H 0.195 0.805 33 H 0.172 0.828 34 H 0.150 0.850 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 7.196 -6.281 6.031 11.296 hybrid contribution -0.532 0.805 -0.496 1.085 sum 6.664 -5.476 5.536 10.248 Atomic orbital electron populations 1.69723 1.08039 1.30313 1.35040 1.26118 0.94727 1.01747 0.90921 0.86277 0.81268 0.79690 0.78643 1.19745 1.22072 1.16707 1.19171 0.92946 0.95974 1.38630 0.89432 1.17624 0.93268 0.90067 0.91870 1.20605 0.95866 1.03878 1.04057 1.20312 0.93897 0.97839 0.99180 1.20180 0.98254 1.00301 1.05581 1.20592 0.94905 0.99140 0.99304 1.17452 0.92744 0.95167 0.97799 1.40611 1.19931 1.42977 1.23156 1.17672 0.93455 0.94983 0.90085 1.21229 0.99745 1.03897 0.92854 1.41227 1.21849 1.29112 1.25907 0.74669 1.18250 0.90172 0.92087 0.92948 1.66488 1.28766 1.05691 1.21513 1.22324 0.88635 0.94261 0.97531 1.21683 1.01618 1.02998 0.98246 1.20924 0.95661 0.91438 0.96078 1.19554 0.98532 1.00669 0.99603 0.90421 0.88131 0.88980 0.88773 0.88041 0.76023 0.80536 0.82797 0.85013 0.85194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.94 13.93 55.54 0.77 -20.17 16 2 C 0.08 2.13 5.42 -17.34 -0.09 2.04 16 3 Si 0.91 20.50 24.45 -169.99 -4.16 16.34 16 4 H -0.27 -5.88 6.68 56.52 0.38 -5.51 16 5 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.24 -5.62 6.78 56.52 0.38 -5.24 16 7 C -0.44 -11.24 9.16 -37.94 -0.35 -11.59 16 8 H 0.09 2.30 7.12 -52.49 -0.37 1.93 16 9 C 0.08 1.84 5.17 -106.62 -0.55 1.29 16 10 C -0.22 -5.20 7.07 -39.29 -0.28 -5.47 16 11 C -0.09 -1.94 9.96 -39.97 -0.40 -2.34 16 12 C -0.22 -4.40 10.03 -39.38 -0.40 -4.80 16 13 C -0.12 -2.36 7.83 -39.40 -0.31 -2.67 16 14 C 0.06 1.40 6.17 -83.34 -0.51 0.89 16 15 N -0.64 -12.83 5.11 -6.85 -0.04 -12.87 16 16 C 0.14 2.66 6.97 -81.79 -0.57 2.09 16 17 C -0.05 -0.82 9.97 -16.24 -0.16 -0.98 16 18 N -0.57 -8.51 6.07 -11.87 -0.07 -8.58 16 19 H 0.42 4.86 8.96 -40.82 -0.37 4.50 16 20 C 0.30 4.96 8.42 -155.65 -1.31 3.65 16 21 N -0.51 -7.86 10.39 -12.27 -0.13 -7.99 16 22 C 0.14 1.76 11.15 -17.50 -0.20 1.56 16 23 C -0.22 -2.74 10.10 -39.43 -0.40 -3.14 16 24 C -0.01 -0.21 10.22 -39.07 -0.40 -0.61 16 25 C -0.17 -2.95 6.39 -105.00 -0.67 -3.62 16 26 H 0.29 6.76 8.30 -40.82 -0.34 6.42 16 27 H 0.10 2.34 4.42 -52.49 -0.23 2.11 16 28 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 29 H 0.09 1.61 8.06 -52.49 -0.42 1.19 16 30 H 0.10 1.85 6.60 -52.49 -0.35 1.51 16 31 H 0.40 7.83 7.89 -40.82 -0.32 7.51 16 32 H 0.18 2.88 6.32 -52.49 -0.33 2.55 16 33 H 0.15 1.38 8.06 -52.49 -0.42 0.96 16 34 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 35 H 0.13 1.69 8.06 -52.48 -0.42 1.27 16 LS Contribution 294.45 15.07 4.44 4.44 Total: -1.00 -28.27 294.45 -9.03 -37.31 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -3.26 Total: 15.23 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: -6.59 Total: -23.72 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: 0.54 Total: -49.60 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.16 Total: 16.34 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.27 -9.03 -37.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210941649.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.493 kcal (2) G-P(sol) polarization free energy of solvation -28.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds