Wall clock time and date at job start Wed Apr 15 2020 11:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30924 * 1 3 3 Si 1.86797 * 120.00091 * 2 1 4 4 H 1.48505 * 109.47083 * 275.24971 * 3 2 1 5 5 H 1.48498 * 109.47407 * 35.24996 * 3 2 1 6 6 H 1.48496 * 109.47212 * 155.25133 * 3 2 1 7 7 C 1.39851 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99486 * 342.11590 * 7 2 1 9 9 C 1.40972 * 119.99998 * 162.11877 * 7 2 1 10 10 C 1.40751 * 120.31549 * 332.13653 * 9 7 2 11 11 C 1.36405 * 119.95842 * 180.02562 * 10 9 7 12 12 C 1.38968 * 120.62398 * 359.97438 * 11 10 9 13 13 C 1.38045 * 120.64465 * 359.74554 * 12 11 10 14 14 C 1.38917 * 120.01312 * 0.51107 * 13 12 11 15 15 N 1.38439 * 120.30763 * 179.76444 * 14 13 12 16 16 C 1.40210 * 119.99728 * 40.53682 * 15 14 13 17 17 C 1.34889 * 126.61881 * 6.12779 * 16 15 14 18 18 N 1.37402 * 109.72611 * 180.02562 * 17 16 15 19 19 H 0.96998 * 124.96441 * 180.02562 * 18 17 16 20 20 C 1.37438 * 110.06453 * 359.97438 * 18 17 16 21 21 N 1.32690 * 133.05075 * 179.97438 * 20 18 17 22 22 C 1.31584 * 121.67889 * 180.02562 * 21 20 18 23 23 C 1.38657 * 121.57170 * 0.02562 * 22 21 20 24 24 C 1.38222 * 119.39954 * 359.97438 * 23 22 21 25 25 C 1.39619 * 118.05680 * 0.02562 * 24 23 22 26 26 H 0.97003 * 120.00266 * 0.02562 * 1 2 3 27 27 H 1.08001 * 120.01985 * 0.04618 * 10 9 7 28 28 H 1.07993 * 119.68572 * 179.97438 * 11 10 9 29 29 H 1.07995 * 119.67835 * 179.97438 * 12 11 10 30 30 H 1.07999 * 119.99708 * 180.25436 * 13 12 11 31 31 H 0.97001 * 120.00569 * 220.52994 * 15 14 13 32 32 H 1.07999 * 125.13697 * 0.03897 * 17 16 15 33 33 H 1.07997 * 119.21517 * 180.02562 * 22 21 20 34 34 H 1.08009 * 120.29733 * 179.97438 * 23 22 21 35 35 H 1.08007 * 120.97203 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2433 1.6177 0.0000 4 1 2.3798 2.1104 -1.3942 5 1 1.5007 2.6181 0.8080 6 1 3.5918 1.4106 0.5861 7 6 2.0085 -1.2111 -0.0005 8 1 1.5076 -2.1239 0.2863 9 6 3.3671 -1.2405 -0.3754 10 6 3.8784 -0.2809 -1.2692 11 6 5.1941 -0.3164 -1.6274 12 6 6.0405 -1.2934 -1.1174 13 6 5.5673 -2.2433 -0.2346 14 6 4.2307 -2.2354 0.1441 15 7 3.7485 -3.1881 1.0252 16 6 4.5198 -3.5749 2.1304 17 6 5.6881 -3.0295 2.5267 18 7 6.1440 -3.6755 3.6505 19 1 6.9651 -3.4613 4.1203 20 6 5.2658 -4.6690 4.0121 21 7 5.2559 -5.5533 5.0013 22 6 4.2796 -6.4247 5.1395 23 6 3.2107 -6.4632 4.2572 24 6 3.1655 -5.5664 3.2064 25 6 4.2119 -4.6509 3.0790 26 1 -0.4851 0.8401 -0.0004 27 1 3.2294 0.4832 -1.6710 28 1 5.5816 0.4218 -2.3139 29 1 7.0795 -1.3075 -1.4116 30 1 6.2352 -2.9954 0.1585 31 1 2.8771 -3.5880 0.8781 32 1 6.1895 -2.2089 2.0351 33 1 4.3117 -7.1265 5.9597 34 1 2.4205 -7.1875 4.3899 35 1 2.3447 -5.5736 2.5044 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210941649.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:43 Heat of formation + Delta-G solvation = 81.981355 kcal Electronic energy + Delta-G solvation = -20459.492976 eV Core-core repulsion = 17421.886711 eV Total energy + Delta-G solvation = -3037.606266 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.38263 -40.06965 -38.57274 -36.22416 -35.48564 -33.47283 -32.32476 -30.97417 -29.99745 -28.81274 -26.80649 -24.58623 -23.65502 -23.30071 -22.32365 -20.70012 -19.34346 -19.21633 -18.47789 -17.32502 -17.18951 -16.63182 -16.12980 -15.99266 -15.67941 -15.46063 -15.13278 -14.89156 -14.40710 -14.19174 -13.90803 -13.64369 -13.53098 -13.19448 -12.86363 -12.72632 -12.62872 -12.19140 -12.03369 -11.63811 -11.51407 -11.04813 -10.70008 -10.35721 -9.47992 -9.34060 -9.28134 -8.87106 -7.78796 -6.30799 0.08972 0.48293 0.81036 0.87032 1.26519 1.40218 1.48949 1.91636 1.98921 2.12419 2.65372 2.74145 2.99159 3.53845 3.63071 3.86451 4.02892 4.23335 4.29880 4.33605 4.46625 4.64254 4.72763 4.77507 4.87119 4.90837 5.06598 5.18991 5.33859 5.37322 5.50521 5.59802 5.74259 5.81300 6.00203 6.06003 6.20681 6.38240 6.48649 6.59074 6.82061 7.01728 7.09037 7.16692 8.20911 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.020351 B = 0.005395 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.548919 B = 5189.097810 C = 5979.313060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.047 3.953 3 Si 0.963 3.037 4 H -0.260 1.260 5 H -0.287 1.287 6 H -0.254 1.254 7 C -0.467 4.467 8 H 0.060 0.940 9 C 0.048 3.952 10 C -0.235 4.235 11 C -0.106 4.106 12 C -0.199 4.199 13 C -0.124 4.124 14 C 0.070 3.930 15 N -0.652 5.652 16 C 0.111 3.889 17 C -0.038 4.038 18 N -0.563 5.563 19 H 0.430 0.570 20 C 0.284 3.716 21 N -0.525 5.525 22 C 0.141 3.859 23 C -0.208 4.208 24 C -0.033 4.033 25 C -0.199 4.199 26 H 0.290 0.710 27 H 0.095 0.905 28 H 0.123 0.877 29 H 0.132 0.868 30 H 0.122 0.878 31 H 0.400 0.600 32 H 0.183 0.817 33 H 0.197 0.803 34 H 0.169 0.831 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.077 -7.506 6.262 13.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.167 4.167 3 Si 0.788 3.212 4 H -0.185 1.185 5 H -0.214 1.214 6 H -0.178 1.178 7 C -0.498 4.498 8 H 0.079 0.921 9 C 0.044 3.956 10 C -0.255 4.255 11 C -0.125 4.125 12 C -0.218 4.218 13 C -0.145 4.145 14 C -0.027 4.027 15 N -0.275 5.275 16 C 0.006 3.994 17 C -0.167 4.167 18 N -0.173 5.173 19 H 0.270 0.730 20 C 0.049 3.951 21 N -0.240 5.240 22 C -0.025 4.025 23 C -0.230 4.230 24 C -0.060 4.060 25 C -0.209 4.209 26 H 0.100 0.900 27 H 0.112 0.888 28 H 0.141 0.859 29 H 0.150 0.850 30 H 0.140 0.860 31 H 0.235 0.765 32 H 0.200 0.800 33 H 0.214 0.786 34 H 0.187 0.813 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 9.732 -7.204 6.822 13.897 hybrid contribution -1.102 0.823 -0.650 1.522 sum 8.629 -6.381 6.172 12.380 Atomic orbital electron populations 1.69762 1.08977 1.31069 1.38188 1.26702 0.95255 1.03954 0.90797 0.85528 0.79575 0.77018 0.79071 1.18532 1.21412 1.17756 1.19134 0.94136 0.95411 1.41070 0.92140 1.17811 0.93129 0.91563 0.93103 1.20753 0.97127 1.03556 1.04071 1.20669 0.93008 0.99018 0.99755 1.20694 0.99803 0.98303 1.03027 1.20860 0.94321 0.99891 0.99411 1.17714 0.93325 0.94359 0.97305 1.40572 1.20131 1.42906 1.23853 1.17924 0.94323 0.96594 0.90547 1.21304 0.99061 1.03384 0.92957 1.41154 1.22207 1.28568 1.25352 0.72992 1.18464 0.90400 0.92804 0.93387 1.66611 1.29959 1.06141 1.21240 1.23140 0.87588 0.93617 0.98132 1.22124 1.02119 1.02228 0.96500 1.21232 0.95554 0.91851 0.97352 1.19775 0.99911 1.01332 0.99846 0.89958 0.88757 0.85914 0.85022 0.85984 0.76511 0.80036 0.78643 0.81338 0.84634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.61 13.93 21.81 0.30 -46.30 16 2 C 0.05 2.47 5.42 85.22 0.46 2.93 16 3 Si 0.96 43.12 24.45 68.60 1.68 44.80 16 4 H -0.26 -10.97 6.68 99.48 0.66 -10.31 16 5 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 6 H -0.25 -11.59 6.78 99.48 0.67 -10.91 16 7 C -0.47 -25.28 9.16 23.33 0.21 -25.06 16 8 H 0.06 3.45 7.12 -2.91 -0.02 3.43 16 9 C 0.05 2.38 5.17 -21.16 -0.11 2.27 16 10 C -0.24 -10.78 7.07 22.46 0.16 -10.62 16 11 C -0.11 -4.11 9.96 22.02 0.22 -3.89 16 12 C -0.20 -7.10 10.03 22.40 0.22 -6.88 16 13 C -0.12 -4.68 7.83 22.39 0.18 -4.50 16 14 C 0.07 3.04 6.17 39.10 0.24 3.29 16 15 N -0.65 -26.67 5.11 -175.58 -0.90 -27.57 16 16 C 0.11 4.11 6.97 39.25 0.27 4.38 16 17 C -0.04 -1.24 9.97 83.05 0.83 -0.42 16 18 N -0.56 -16.01 6.07 -191.47 -1.16 -17.17 16 19 H 0.43 9.35 8.96 -92.71 -0.83 8.52 16 20 C 0.28 9.02 8.42 133.91 1.13 10.14 16 21 N -0.52 -15.00 10.39 -192.72 -2.00 -17.01 16 22 C 0.14 3.11 11.15 84.83 0.95 4.06 16 23 C -0.21 -4.52 10.10 22.37 0.23 -4.29 16 24 C -0.03 -0.95 10.22 22.60 0.23 -0.72 16 25 C -0.20 -6.71 6.39 -20.11 -0.13 -6.84 16 26 H 0.29 14.42 8.30 -92.71 -0.77 13.65 16 27 H 0.09 4.38 4.42 -2.91 -0.01 4.36 16 28 H 0.12 4.00 8.06 -2.91 -0.02 3.97 16 29 H 0.13 3.77 8.06 -2.91 -0.02 3.75 16 30 H 0.12 4.12 6.60 -2.91 -0.02 4.10 16 31 H 0.40 16.51 7.89 -92.71 -0.73 15.78 16 32 H 0.18 5.63 6.32 -2.91 -0.02 5.61 16 33 H 0.20 2.57 8.06 -2.91 -0.02 2.54 16 34 H 0.17 2.38 8.06 -2.91 -0.02 2.35 16 35 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -63.17 294.45 2.53 -60.64 By element: Atomic # 1 Polarization: 39.25 SS G_CDS: -0.47 Total: 38.78 kcal Atomic # 6 Polarization: -41.25 SS G_CDS: 5.09 Total: -36.16 kcal Atomic # 7 Polarization: -104.29 SS G_CDS: -3.76 Total: -108.05 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 1.68 Total: 44.80 kcal Total: -63.17 2.53 -60.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210941649.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.619 kcal (2) G-P(sol) polarization free energy of solvation -63.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds