Wall clock time and date at job start Wed Apr 15 2020 11:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30991 * 1 3 3 Si 1.86808 * 119.99778 * 2 1 4 4 H 1.48502 * 109.46854 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47237 * 300.00270 * 3 2 1 6 6 H 1.48503 * 109.46570 * 60.00559 * 3 2 1 7 7 C 1.39721 * 120.00382 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00046 * 191.46176 * 7 2 1 9 9 C 1.40994 * 119.99824 * 11.46120 * 7 2 1 10 10 C 1.40735 * 120.31903 * 27.69615 * 9 7 2 11 11 C 1.36379 * 119.96737 * 179.74534 * 10 9 7 12 12 C 1.38990 * 120.63037 * 0.27334 * 11 10 9 13 13 C 1.37994 * 120.64690 * 0.02562 * 12 11 10 14 14 C 1.38978 * 120.00938 * 359.95316 * 13 12 11 15 15 N 1.38326 * 120.30957 * 179.97438 * 14 13 12 16 16 C 1.40039 * 119.99921 * 40.50820 * 15 14 13 17 17 C 1.39190 * 126.32194 * 6.50299 * 16 15 14 18 18 N 1.31460 * 108.99177 * 180.02562 * 17 16 15 19 19 N 1.40013 * 109.12638 * 359.97438 * 18 17 16 20 20 C 1.36691 * 132.39350 * 180.02562 * 19 18 17 21 21 C 1.34981 * 120.62508 * 179.25077 * 20 19 18 22 22 C 1.40453 * 120.43962 * 0.58978 * 21 20 19 23 23 C 1.36243 * 119.61034 * 359.61675 * 22 21 20 24 24 C 1.37407 * 107.55031 * 359.73569 * 19 18 17 25 25 H 0.96999 * 120.00453 * 359.97438 * 1 2 3 26 26 H 1.08009 * 120.01179 * 0.02562 * 10 9 7 27 27 H 1.08003 * 119.68596 * 180.24925 * 11 10 9 28 28 H 1.08001 * 119.67528 * 179.97438 * 12 11 10 29 29 H 1.08001 * 119.99655 * 179.97438 * 13 12 11 30 30 H 0.96999 * 119.99768 * 220.51299 * 15 14 13 31 31 H 1.08002 * 125.50091 * 359.97255 * 17 16 15 32 32 H 1.07997 * 119.68839 * 359.92794 * 20 19 18 33 33 H 1.07998 * 119.77893 * 180.18715 * 21 20 19 34 34 H 1.08007 * 120.19378 * 179.64297 * 22 21 20 35 35 H 1.07998 * 120.37020 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 14 2.2439 1.6178 0.0000 4 1 3.7039 1.3465 -0.0006 5 1 1.8851 2.3965 -1.2124 6 1 1.8851 2.3964 1.2126 7 6 2.0086 -1.2100 -0.0005 8 1 3.0725 -1.2193 0.1853 9 6 1.3248 -2.4188 -0.2437 10 6 0.1550 -2.4283 -1.0262 11 6 -0.4978 -3.6024 -1.2612 12 6 -0.0227 -4.7955 -0.7297 13 6 1.1183 -4.8149 0.0462 14 6 1.8049 -3.6341 0.3023 15 7 2.9490 -3.6463 1.0797 16 6 3.8835 -4.6791 0.9340 17 6 3.8597 -5.6826 -0.0303 18 7 4.8972 -6.4703 0.1464 19 7 5.6428 -6.0091 1.2380 20 6 6.7907 -6.4609 1.8269 21 6 7.3234 -5.8109 2.8832 22 6 6.6988 -4.6651 3.4025 23 6 5.5518 -4.2051 2.8288 24 6 5.0143 -4.8886 1.7253 25 1 -0.4851 0.8400 0.0004 26 1 -0.2228 -1.5068 -1.4442 27 1 -1.3928 -3.6050 -1.8657 28 1 -0.5521 -5.7163 -0.9253 29 1 1.4780 -5.7480 0.4542 30 1 3.1039 -2.9395 1.7257 31 1 3.1095 -5.7962 -0.7988 32 1 7.2819 -7.3399 1.4366 33 1 8.2325 -6.1781 3.3360 34 1 7.1254 -4.1515 4.2515 35 1 5.0611 -3.3255 3.2184 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211096591.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:47 Heat of formation + Delta-G solvation = 132.596144 kcal Electronic energy + Delta-G solvation = -20427.314868 eV Core-core repulsion = 17391.903424 eV Total energy + Delta-G solvation = -3035.411444 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.53512 -38.20108 -36.79878 -34.63320 -33.65125 -31.92667 -30.37432 -29.68565 -28.48518 -26.65679 -25.10510 -23.46613 -22.53353 -21.34104 -20.77429 -19.75799 -17.41473 -16.97582 -16.78208 -16.02695 -15.63937 -15.21357 -14.99827 -14.81436 -14.32635 -14.17590 -13.35995 -12.96881 -12.63268 -12.48299 -11.99923 -11.78126 -11.65361 -11.56965 -11.28911 -11.17711 -11.05058 -10.65662 -10.49431 -10.40531 -9.82113 -9.65113 -9.27139 -9.07443 -8.99379 -7.46341 -7.40569 -6.77592 -5.95757 -4.35110 1.08410 1.38164 2.59651 2.71963 2.85822 3.05124 3.09921 3.16228 3.28038 3.73529 3.90256 4.26999 4.60992 4.66549 4.92136 5.08992 5.15765 5.30434 5.60916 5.71883 5.76708 5.85791 6.17864 6.21431 6.38010 6.42575 6.50992 6.66739 6.72771 6.99338 7.11014 7.22540 7.26483 7.40622 7.65133 7.77137 7.91042 8.05629 8.15109 8.35679 8.57185 8.71776 8.85391 8.99778 10.17971 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.017207 B = 0.005612 C = 0.004414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.884810 B = 4988.499567 C = 6342.004702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.074 3.926 3 Si 0.908 3.092 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.275 1.275 7 C -0.458 4.458 8 H 0.076 0.924 9 C 0.091 3.909 10 C -0.138 4.138 11 C -0.124 4.124 12 C -0.213 4.213 13 C -0.129 4.129 14 C 0.050 3.950 15 N -0.638 5.638 16 C 0.085 3.915 17 C 0.032 3.968 18 N -0.299 5.299 19 N -0.281 5.281 20 C 0.105 3.895 21 C -0.166 4.166 22 C -0.129 4.129 23 C -0.073 4.073 24 C 0.002 3.998 25 H 0.279 0.721 26 H 0.123 0.877 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.402 0.598 31 H 0.194 0.806 32 H 0.158 0.842 33 H 0.143 0.857 34 H 0.130 0.870 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.404 -5.543 4.741 11.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.200 1.200 7 C -0.488 4.488 8 H 0.095 0.905 9 C 0.087 3.913 10 C -0.158 4.158 11 C -0.143 4.143 12 C -0.232 4.232 13 C -0.150 4.150 14 C -0.046 4.046 15 N -0.260 5.260 16 C -0.026 4.026 17 C -0.147 4.147 18 N -0.125 5.125 19 N -0.056 5.056 20 C -0.019 4.019 21 C -0.189 4.189 22 C -0.153 4.153 23 C -0.093 4.093 24 C -0.118 4.118 25 H 0.090 0.910 26 H 0.141 0.859 27 H 0.106 0.894 28 H 0.107 0.893 29 H 0.112 0.888 30 H 0.238 0.762 31 H 0.211 0.789 32 H 0.175 0.825 33 H 0.161 0.839 34 H 0.148 0.852 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 9.620 -6.483 4.099 12.303 hybrid contribution -0.097 1.777 0.549 1.862 sum 9.522 -4.706 4.648 11.594 Atomic orbital electron populations 1.69865 1.07300 1.28879 1.36647 1.25839 0.94799 1.01132 0.92510 0.86264 0.80794 0.81139 0.78542 1.18577 1.19802 1.20039 1.19330 0.95959 0.90434 1.43078 0.90543 1.17541 0.93094 0.91211 0.89444 1.21008 0.97467 0.96923 1.00374 1.20444 0.99225 0.93417 1.01264 1.20221 0.99408 0.96641 1.06980 1.20494 0.96317 0.96000 1.02190 1.17615 0.90701 0.94844 1.01469 1.40483 1.18622 1.24922 1.42012 1.17731 0.92301 0.95311 0.97244 1.23740 0.97412 0.93742 0.99831 1.77592 1.07404 1.23849 1.03608 1.45499 1.18088 1.19573 1.22404 1.21232 0.85837 0.99976 0.94860 1.20605 1.02194 0.98126 0.98012 1.20838 0.96053 0.97324 1.01073 1.20400 0.96018 0.99354 0.93487 1.18485 0.98014 0.94330 1.00941 0.91034 0.85911 0.89419 0.89261 0.88815 0.76184 0.78900 0.82452 0.83904 0.85234 0.84598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.99 10.80 55.54 0.60 -19.39 16 2 C 0.07 1.78 5.24 -17.36 -0.09 1.69 16 3 Si 0.91 18.27 29.57 -169.99 -5.03 13.24 16 4 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 5 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 6 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.46 -11.48 8.41 -37.98 -0.32 -11.80 16 8 H 0.08 1.88 7.51 -52.48 -0.39 1.48 16 9 C 0.09 2.31 5.57 -106.62 -0.59 1.72 16 10 C -0.14 -3.44 8.60 -39.31 -0.34 -3.78 16 11 C -0.12 -2.83 9.96 -39.97 -0.40 -3.23 16 12 C -0.21 -4.60 10.03 -39.39 -0.40 -4.99 16 13 C -0.13 -2.82 7.82 -39.40 -0.31 -3.12 16 14 C 0.05 1.15 6.17 -83.37 -0.51 0.63 16 15 N -0.64 -13.17 4.97 -7.76 -0.04 -13.21 16 16 C 0.08 1.64 6.77 -83.25 -0.56 1.08 16 17 C 0.03 0.61 10.00 -17.36 -0.17 0.43 16 18 N -0.30 -5.52 12.65 30.59 0.39 -5.13 16 19 N -0.28 -4.71 3.91 -10.51 -0.04 -4.75 16 20 C 0.10 1.32 11.20 -16.54 -0.19 1.14 16 21 C -0.17 -1.76 9.98 -39.90 -0.40 -2.15 16 22 C -0.13 -1.48 10.08 -39.47 -0.40 -1.88 16 23 C -0.07 -1.04 10.10 -39.45 -0.40 -1.43 16 24 C 0.00 0.04 6.84 -84.01 -0.57 -0.53 16 25 H 0.28 6.37 8.30 -40.82 -0.34 6.04 16 26 H 0.12 3.19 6.15 -52.48 -0.32 2.86 16 27 H 0.09 1.79 8.06 -52.48 -0.42 1.36 16 28 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 29 H 0.09 1.91 6.60 -52.49 -0.35 1.56 16 30 H 0.40 7.96 8.38 -40.82 -0.34 7.62 16 31 H 0.19 3.58 6.43 -52.49 -0.34 3.25 16 32 H 0.16 1.52 8.06 -52.49 -0.42 1.09 16 33 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 35 H 0.14 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 301.72 15.07 4.55 4.55 Total: -1.00 -28.17 301.72 -8.64 -36.81 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -3.41 Total: 14.14 kcal Atomic # 6 Polarization: -20.60 SS G_CDS: -5.65 Total: -26.25 kcal Atomic # 7 Polarization: -43.39 SS G_CDS: 0.91 Total: -42.48 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.03 Total: 13.24 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.17 -8.64 -36.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211096591.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.404 kcal (2) G-P(sol) polarization free energy of solvation -28.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds