Wall clock time and date at job start Wed Apr 15 2020 11:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30991 * 1 3 3 Si 1.86808 * 119.99778 * 2 1 4 4 H 1.48502 * 109.46854 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47237 * 300.00270 * 3 2 1 6 6 H 1.48503 * 109.46570 * 60.00559 * 3 2 1 7 7 C 1.39721 * 120.00382 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00046 * 191.46176 * 7 2 1 9 9 C 1.40994 * 119.99824 * 11.46120 * 7 2 1 10 10 C 1.40735 * 120.31903 * 27.69615 * 9 7 2 11 11 C 1.36379 * 119.96737 * 179.74534 * 10 9 7 12 12 C 1.38990 * 120.63037 * 0.27334 * 11 10 9 13 13 C 1.37994 * 120.64690 * 0.02562 * 12 11 10 14 14 C 1.38978 * 120.00938 * 359.95316 * 13 12 11 15 15 N 1.38326 * 120.30957 * 179.97438 * 14 13 12 16 16 C 1.40039 * 119.99921 * 40.50820 * 15 14 13 17 17 C 1.39190 * 126.32194 * 6.50299 * 16 15 14 18 18 N 1.31460 * 108.99177 * 180.02562 * 17 16 15 19 19 N 1.40013 * 109.12638 * 359.97438 * 18 17 16 20 20 C 1.36691 * 132.39350 * 180.02562 * 19 18 17 21 21 C 1.34981 * 120.62508 * 179.25077 * 20 19 18 22 22 C 1.40453 * 120.43962 * 0.58978 * 21 20 19 23 23 C 1.36243 * 119.61034 * 359.61675 * 22 21 20 24 24 C 1.37407 * 107.55031 * 359.73569 * 19 18 17 25 25 H 0.96999 * 120.00453 * 359.97438 * 1 2 3 26 26 H 1.08009 * 120.01179 * 0.02562 * 10 9 7 27 27 H 1.08003 * 119.68596 * 180.24925 * 11 10 9 28 28 H 1.08001 * 119.67528 * 179.97438 * 12 11 10 29 29 H 1.08001 * 119.99655 * 179.97438 * 13 12 11 30 30 H 0.96999 * 119.99768 * 220.51299 * 15 14 13 31 31 H 1.08002 * 125.50091 * 359.97255 * 17 16 15 32 32 H 1.07997 * 119.68839 * 359.92794 * 20 19 18 33 33 H 1.07998 * 119.77893 * 180.18715 * 21 20 19 34 34 H 1.08007 * 120.19378 * 179.64297 * 22 21 20 35 35 H 1.07998 * 120.37020 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 14 2.2439 1.6178 0.0000 4 1 3.7039 1.3465 -0.0006 5 1 1.8851 2.3965 -1.2124 6 1 1.8851 2.3964 1.2126 7 6 2.0086 -1.2100 -0.0005 8 1 3.0725 -1.2193 0.1853 9 6 1.3248 -2.4188 -0.2437 10 6 0.1550 -2.4283 -1.0262 11 6 -0.4978 -3.6024 -1.2612 12 6 -0.0227 -4.7955 -0.7297 13 6 1.1183 -4.8149 0.0462 14 6 1.8049 -3.6341 0.3023 15 7 2.9490 -3.6463 1.0797 16 6 3.8835 -4.6791 0.9340 17 6 3.8597 -5.6826 -0.0303 18 7 4.8972 -6.4703 0.1464 19 7 5.6428 -6.0091 1.2380 20 6 6.7907 -6.4609 1.8269 21 6 7.3234 -5.8109 2.8832 22 6 6.6988 -4.6651 3.4025 23 6 5.5518 -4.2051 2.8288 24 6 5.0143 -4.8886 1.7253 25 1 -0.4851 0.8400 0.0004 26 1 -0.2228 -1.5068 -1.4442 27 1 -1.3928 -3.6050 -1.8657 28 1 -0.5521 -5.7163 -0.9253 29 1 1.4780 -5.7480 0.4542 30 1 3.1039 -2.9395 1.7257 31 1 3.1095 -5.7962 -0.7988 32 1 7.2819 -7.3399 1.4366 33 1 8.2325 -6.1781 3.3360 34 1 7.1254 -4.1515 4.2515 35 1 5.0611 -3.3255 3.2184 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211096591.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:47 Heat of formation + Delta-G solvation = 117.925575 kcal Electronic energy + Delta-G solvation = -20427.951031 eV Core-core repulsion = 17391.903424 eV Total energy + Delta-G solvation = -3036.047607 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.80838 -39.86275 -38.02554 -36.13930 -35.43728 -33.17379 -31.63313 -31.42118 -30.04871 -28.08912 -26.88460 -24.57674 -23.83406 -22.89691 -22.45110 -21.26843 -19.15466 -18.33389 -18.17010 -17.24954 -17.07873 -16.62734 -16.50507 -16.03010 -15.86297 -15.45148 -15.06024 -14.52240 -14.22779 -13.99495 -13.54685 -13.06366 -13.00583 -12.91497 -12.77159 -12.69431 -12.59283 -12.14365 -12.10385 -11.72962 -11.49608 -11.40675 -11.05555 -10.51453 -10.18442 -9.27430 -9.03303 -8.54016 -7.43768 -6.19617 0.01002 0.19571 0.98877 1.11516 1.39379 1.43253 1.51754 1.52687 1.89624 2.22786 2.59349 2.81197 2.81514 3.55539 3.74788 3.80930 4.04008 4.10359 4.28366 4.45660 4.48378 4.64029 4.67520 4.82914 4.83632 5.16897 5.19764 5.26834 5.35356 5.41204 5.43971 5.64020 5.65604 5.89733 5.99220 6.08148 6.23522 6.35425 6.56707 6.62010 6.85968 6.96908 7.14716 7.26033 8.41952 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.017207 B = 0.005612 C = 0.004414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.884810 B = 4988.499567 C = 6342.004702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.034 3.966 3 Si 0.978 3.022 4 H -0.263 1.263 5 H -0.269 1.269 6 H -0.266 1.266 7 C -0.482 4.482 8 H 0.071 0.929 9 C 0.056 3.944 10 C -0.161 4.161 11 C -0.134 4.134 12 C -0.206 4.206 13 C -0.136 4.136 14 C 0.058 3.942 15 N -0.644 5.644 16 C 0.034 3.966 17 C 0.018 3.982 18 N -0.328 5.328 19 N -0.279 5.279 20 C 0.078 3.922 21 C -0.143 4.143 22 C -0.094 4.094 23 C -0.114 4.114 24 C 0.018 3.982 25 H 0.284 0.716 26 H 0.105 0.895 27 H 0.108 0.892 28 H 0.119 0.881 29 H 0.106 0.894 30 H 0.401 0.599 31 H 0.186 0.814 32 H 0.188 0.812 33 H 0.195 0.805 34 H 0.172 0.828 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.463 -6.380 6.823 15.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.179 4.179 3 Si 0.800 3.200 4 H -0.186 1.186 5 H -0.194 1.194 6 H -0.191 1.191 7 C -0.513 4.513 8 H 0.089 0.911 9 C 0.052 3.948 10 C -0.181 4.181 11 C -0.153 4.153 12 C -0.226 4.226 13 C -0.158 4.158 14 C -0.039 4.039 15 N -0.269 5.269 16 C -0.074 4.074 17 C -0.158 4.158 18 N -0.154 5.154 19 N -0.051 5.051 20 C -0.045 4.045 21 C -0.165 4.165 22 C -0.117 4.117 23 C -0.134 4.134 24 C -0.104 4.104 25 H 0.094 0.906 26 H 0.123 0.877 27 H 0.127 0.873 28 H 0.137 0.863 29 H 0.124 0.876 30 H 0.236 0.764 31 H 0.203 0.797 32 H 0.205 0.795 33 H 0.212 0.788 34 H 0.189 0.811 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 12.711 -7.373 6.178 15.940 hybrid contribution -0.711 1.819 0.136 1.958 sum 12.000 -5.553 6.315 14.653 Atomic orbital electron populations 1.69933 1.08580 1.29889 1.37726 1.26592 0.95501 1.04022 0.91790 0.85217 0.79171 0.76922 0.78726 1.18646 1.19432 1.19118 1.19433 0.95763 0.91365 1.44741 0.91122 1.17872 0.93988 0.92402 0.90555 1.20979 0.98440 0.97165 1.01558 1.20670 0.99876 0.93085 1.01679 1.20573 0.99045 0.97349 1.05591 1.20679 0.96384 0.96224 1.02472 1.17778 0.91152 0.94519 1.00428 1.40264 1.18680 1.25730 1.42196 1.17821 0.93962 0.96192 0.99396 1.23616 0.97904 0.94307 0.99995 1.77535 1.08096 1.24561 1.05251 1.45921 1.18590 1.19002 1.21621 1.22144 0.84908 1.01670 0.95740 1.21329 1.02743 0.96433 0.96001 1.21500 0.93650 0.96283 1.00291 1.20697 0.98115 1.00704 0.93880 1.18926 0.96868 0.94008 1.00607 0.90552 0.87706 0.87350 0.86343 0.87575 0.76350 0.79724 0.79476 0.78782 0.81061 0.83789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.41 10.80 21.79 0.24 -43.17 16 2 C 0.03 1.70 5.24 85.18 0.45 2.14 16 3 Si 0.98 38.46 29.57 68.60 2.03 40.49 16 4 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 5 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 6 H -0.27 -10.00 7.11 99.48 0.71 -9.30 16 7 C -0.48 -25.45 8.41 23.30 0.20 -25.26 16 8 H 0.07 3.66 7.51 -2.91 -0.02 3.64 16 9 C 0.06 2.99 5.57 -21.16 -0.12 2.87 16 10 C -0.16 -8.48 8.60 22.45 0.19 -8.28 16 11 C -0.13 -6.24 9.96 22.02 0.22 -6.02 16 12 C -0.21 -8.96 10.03 22.39 0.22 -8.74 16 13 C -0.14 -6.11 7.82 22.39 0.18 -5.94 16 14 C 0.06 2.82 6.17 39.13 0.24 3.06 16 15 N -0.64 -27.90 4.97 -178.47 -0.89 -28.79 16 16 C 0.03 1.38 6.77 38.39 0.26 1.64 16 17 C 0.02 0.72 10.00 84.98 0.85 1.57 16 18 N -0.33 -12.18 12.65 -57.14 -0.72 -12.90 16 19 N -0.28 -8.93 3.91 -187.17 -0.73 -9.66 16 20 C 0.08 1.67 11.20 83.19 0.93 2.60 16 21 C -0.14 -2.15 9.98 22.06 0.22 -1.93 16 22 C -0.09 -1.65 10.08 22.34 0.23 -1.42 16 23 C -0.11 -2.97 10.10 22.35 0.23 -2.75 16 24 C 0.02 0.60 6.84 39.15 0.27 0.87 16 25 H 0.28 13.46 8.30 -92.71 -0.77 12.69 16 26 H 0.11 5.79 6.15 -2.91 -0.02 5.77 16 27 H 0.11 4.46 8.06 -2.91 -0.02 4.43 16 28 H 0.12 4.39 8.06 -2.91 -0.02 4.37 16 29 H 0.11 4.44 6.60 -2.91 -0.02 4.42 16 30 H 0.40 16.77 8.38 -92.71 -0.78 15.99 16 31 H 0.19 7.31 6.43 -2.91 -0.02 7.29 16 32 H 0.19 2.79 8.06 -2.91 -0.02 2.77 16 33 H 0.20 1.07 8.06 -2.91 -0.02 1.05 16 34 H 0.17 1.70 8.06 -2.91 -0.02 1.67 16 35 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -65.35 301.72 4.84 -60.52 By element: Atomic # 1 Polarization: 38.74 SS G_CDS: 0.36 Total: 39.09 kcal Atomic # 6 Polarization: -50.14 SS G_CDS: 4.56 Total: -45.58 kcal Atomic # 7 Polarization: -92.41 SS G_CDS: -2.11 Total: -94.52 kcal Atomic # 14 Polarization: 38.46 SS G_CDS: 2.03 Total: 40.49 kcal Total: -65.35 4.84 -60.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211096591.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.443 kcal (2) G-P(sol) polarization free energy of solvation -65.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds