Wall clock time and date at job start Wed Apr 15 2020 11:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30892 * 1 3 3 Si 1.86808 * 119.99787 * 2 1 4 4 H 1.48495 * 109.46911 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46892 * 120.00341 * 3 2 1 6 6 H 1.48503 * 109.46741 * 240.00268 * 3 2 1 7 7 C 1.39898 * 120.00187 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99894 * 154.22057 * 7 2 1 9 9 C 1.40998 * 119.99764 * 334.21077 * 7 2 1 10 10 C 1.40742 * 120.31314 * 334.70861 * 9 7 2 11 11 C 1.36418 * 119.95434 * 179.97438 * 10 9 7 12 12 C 1.38938 * 120.61314 * 0.02562 * 11 10 9 13 13 C 1.38096 * 120.63624 * 359.97438 * 12 11 10 14 14 C 1.38848 * 120.01823 * 359.71454 * 13 12 11 15 15 N 1.38615 * 120.29682 * 180.30096 * 14 13 12 16 16 C 1.39633 * 120.00277 * 258.29172 * 15 14 13 17 17 C 1.38600 * 120.15982 * 356.03627 * 16 15 14 18 18 C 1.38649 * 120.36539 * 179.71527 * 17 16 15 19 19 C 1.37661 * 120.59795 * 0.56091 * 18 17 16 20 20 C 1.39884 * 119.92582 * 359.72143 * 19 18 17 21 21 N 1.35779 * 133.51786 * 179.97438 * 20 19 18 22 22 C 1.30126 * 109.65231 * 179.97438 * 21 20 19 23 23 N 1.35963 * 110.07583 * 0.02562 * 22 21 20 24 24 H 0.96992 * 126.35867 * 179.97438 * 23 22 21 25 25 C 1.38152 * 107.28398 * 359.97438 * 23 22 21 26 26 H 0.97004 * 119.99360 * 173.89919 * 1 2 3 27 27 H 1.08003 * 120.02108 * 359.97438 * 10 9 7 28 28 H 1.08007 * 119.69266 * 179.97438 * 11 10 9 29 29 H 1.08002 * 119.68595 * 179.97438 * 12 11 10 30 30 H 1.07999 * 119.99365 * 180.02562 * 13 12 11 31 31 H 0.97004 * 119.99910 * 78.30598 * 15 14 13 32 32 H 1.08001 * 119.81736 * 0.02562 * 17 16 15 33 33 H 1.08001 * 119.70158 * 180.25707 * 18 17 16 34 34 H 1.07994 * 120.03482 * 179.69631 * 19 18 17 35 35 H 1.07998 * 124.96498 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 1.2779 2.7465 -0.0006 5 1 3.0967 1.6964 1.2125 6 1 3.0966 1.6965 -1.2126 7 6 2.0085 -1.2115 -0.0005 8 1 3.0078 -1.2578 -0.4073 9 6 1.4088 -2.3720 0.5302 10 6 0.3982 -2.2675 1.5042 11 6 -0.1773 -3.3951 2.0124 12 6 0.2247 -4.6520 1.5779 13 6 1.2139 -4.7835 0.6233 14 6 1.8130 -3.6532 0.0836 15 7 2.8022 -3.7783 -0.8795 16 6 4.1444 -3.6278 -0.5254 17 6 4.4874 -3.2726 0.7697 18 6 5.8190 -3.1277 1.1274 19 6 6.8186 -3.3227 0.2012 20 6 6.4934 -3.6761 -1.1126 21 7 7.2327 -3.9296 -2.2229 22 6 6.4445 -4.2214 -3.2163 23 7 5.1471 -4.1746 -2.8120 24 1 4.3671 -4.3508 -3.3609 25 6 5.1463 -3.8295 -1.4743 26 1 -0.4849 -0.8354 -0.0893 27 1 0.0787 -1.2951 1.8491 28 1 -0.9522 -3.3099 2.7600 29 1 -0.2409 -5.5348 1.9906 30 1 1.5181 -5.7657 0.2927 31 1 2.5618 -3.9703 -1.7994 32 1 3.7132 -3.1126 1.5055 33 1 6.0743 -2.8546 2.1407 34 1 7.8527 -3.2027 0.4885 35 1 6.7727 -4.4645 -4.2161 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001213032525.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:50 Heat of formation + Delta-G solvation = 74.530541 kcal Electronic energy + Delta-G solvation = -20870.205103 eV Core-core repulsion = 17832.275746 eV Total energy + Delta-G solvation = -3037.929357 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.91539 -40.28123 -38.20593 -36.14400 -35.71980 -33.44297 -31.25210 -30.93570 -30.01241 -28.86042 -26.82808 -23.98900 -23.40047 -22.82930 -22.68900 -21.41516 -19.78691 -19.47252 -18.08497 -17.51850 -16.76392 -16.55162 -16.38220 -15.94241 -15.87936 -15.54410 -14.95903 -14.60073 -14.33272 -14.16261 -13.90168 -13.15006 -13.12300 -12.77541 -12.61032 -12.58870 -12.41125 -12.06086 -11.98705 -11.72341 -11.39966 -11.03054 -10.92383 -10.34472 -9.55475 -9.49632 -9.29086 -9.12174 -7.95427 -6.41937 0.29306 0.68418 0.82612 0.92171 1.45942 1.58866 1.73623 2.02223 2.09709 2.26653 2.64167 2.71076 3.07334 3.49958 3.51225 3.98651 4.19254 4.33286 4.41926 4.44099 4.59664 4.66275 4.72986 4.91006 4.99121 5.05650 5.19831 5.33035 5.43891 5.60682 5.65679 5.77779 5.80625 5.89147 5.99509 6.01300 6.19941 6.32341 6.56730 6.59835 6.74438 6.90966 7.01764 7.13515 8.02360 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.014849 B = 0.006991 C = 0.005611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.149772 B = 4004.339053 C = 4988.766566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.008 3.992 3 Si 1.102 2.898 4 H -0.269 1.269 5 H -0.265 1.265 6 H -0.267 1.267 7 C -0.520 4.520 8 H 0.068 0.932 9 C 0.080 3.920 10 C -0.232 4.232 11 C -0.085 4.085 12 C -0.244 4.244 13 C -0.080 4.080 14 C 0.002 3.998 15 N -0.664 5.664 16 C 0.239 3.761 17 C -0.204 4.204 18 C -0.072 4.072 19 C -0.155 4.155 20 C 0.067 3.933 21 N -0.543 5.543 22 C 0.278 3.722 23 N -0.589 5.589 24 H 0.433 0.567 25 C -0.034 4.034 26 H 0.285 0.715 27 H 0.088 0.912 28 H 0.113 0.887 29 H 0.121 0.879 30 H 0.112 0.888 31 H 0.393 0.607 32 H 0.105 0.895 33 H 0.143 0.857 34 H 0.135 0.865 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.008 -6.040 -4.968 10.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.210 4.210 3 Si 0.920 3.080 4 H -0.194 1.194 5 H -0.190 1.190 6 H -0.192 1.192 7 C -0.548 4.548 8 H 0.086 0.914 9 C 0.075 3.925 10 C -0.252 4.252 11 C -0.104 4.104 12 C -0.263 4.263 13 C -0.100 4.100 14 C -0.092 4.092 15 N -0.287 5.287 16 C 0.134 3.866 17 C -0.230 4.230 18 C -0.093 4.093 19 C -0.178 4.178 20 C -0.052 4.052 21 N -0.264 5.264 22 C -0.009 4.009 23 N -0.202 5.202 24 H 0.273 0.727 25 C -0.145 4.145 26 H 0.098 0.902 27 H 0.106 0.894 28 H 0.131 0.869 29 H 0.139 0.861 30 H 0.130 0.870 31 H 0.229 0.771 32 H 0.123 0.877 33 H 0.161 0.839 34 H 0.153 0.847 35 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 7.520 -4.339 -4.767 9.904 hybrid contribution -1.602 -1.735 -0.496 2.414 sum 5.917 -6.074 -5.263 9.980 Atomic orbital electron populations 1.70596 1.08764 1.33308 1.30906 1.28105 0.95661 1.07006 0.90183 0.83173 0.74962 0.70957 0.78866 1.19382 1.18983 1.19188 1.20439 1.02965 0.94646 1.36741 0.91434 1.18118 0.90933 0.92971 0.90445 1.20856 1.04435 0.97449 1.02418 1.20694 0.98359 0.92848 0.98464 1.20560 1.04200 0.96587 1.04996 1.21110 0.96376 0.96669 0.95866 1.17335 0.99281 0.92001 1.00550 1.40928 1.00896 1.77598 1.09237 1.17013 0.82449 0.95199 0.91938 1.20401 0.97056 1.10680 0.94847 1.20807 0.90880 0.97770 0.99842 1.20094 0.99856 1.07821 0.89999 1.19163 0.88430 1.02838 0.94769 1.70430 1.33584 1.23364 0.99070 1.26273 0.77988 0.95694 1.00986 1.42999 1.10573 1.58788 1.07795 0.72689 1.18494 0.95952 1.13473 0.86620 0.90223 0.89418 0.86856 0.86084 0.87025 0.77148 0.87698 0.83898 0.84734 0.71851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.63 12.31 21.82 0.27 -42.36 16 2 C 0.01 0.39 4.93 85.23 0.42 0.81 16 3 Si 1.10 44.04 30.00 68.60 2.06 46.10 16 4 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 5 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 6 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 7 C -0.52 -26.77 8.24 23.35 0.19 -26.58 16 8 H 0.07 3.58 6.52 -2.91 -0.02 3.56 16 9 C 0.08 3.97 4.52 -21.17 -0.10 3.88 16 10 C -0.23 -11.38 7.90 22.46 0.18 -11.20 16 11 C -0.09 -3.66 9.96 22.01 0.22 -3.44 16 12 C -0.24 -9.72 10.03 22.40 0.22 -9.50 16 13 C -0.08 -3.28 9.96 22.38 0.22 -3.06 16 14 C 0.00 0.10 4.71 39.04 0.18 0.28 16 15 N -0.66 -25.97 4.81 -179.26 -0.86 -26.83 16 16 C 0.24 9.34 5.67 38.28 0.22 9.55 16 17 C -0.20 -8.32 8.55 22.45 0.19 -8.12 16 18 C -0.07 -2.54 10.01 22.23 0.22 -2.31 16 19 C -0.16 -5.33 10.10 22.53 0.23 -5.10 16 20 C 0.07 2.37 7.23 39.44 0.28 2.66 16 21 N -0.54 -16.96 11.27 -192.12 -2.17 -19.13 16 22 C 0.28 6.07 12.97 180.07 2.34 8.40 16 23 N -0.59 -14.38 6.23 -190.77 -1.19 -15.57 16 24 H 0.43 7.69 8.96 -92.71 -0.83 6.86 16 25 C -0.03 -1.18 7.16 38.95 0.28 -0.90 16 26 H 0.29 15.45 6.73 -92.71 -0.62 14.82 16 27 H 0.09 4.57 6.49 -2.91 -0.02 4.56 16 28 H 0.11 4.25 8.06 -2.91 -0.02 4.22 16 29 H 0.12 4.09 8.06 -2.91 -0.02 4.06 16 30 H 0.11 4.04 8.06 -2.91 -0.02 4.01 16 31 H 0.39 13.49 8.84 -92.71 -0.82 12.67 16 32 H 0.10 4.80 6.47 -2.91 -0.02 4.78 16 33 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 34 H 0.13 4.01 8.06 -2.91 -0.02 3.98 16 35 H 0.27 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -64.19 300.23 3.06 -61.13 By element: Atomic # 1 Polarization: 41.64 SS G_CDS: -0.35 Total: 41.29 kcal Atomic # 6 Polarization: -49.93 SS G_CDS: 5.30 Total: -44.63 kcal Atomic # 7 Polarization: -99.94 SS G_CDS: -3.95 Total: -103.89 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.06 Total: 46.10 kcal Total: -64.19 3.06 -61.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213032525.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.658 kcal (2) G-P(sol) polarization free energy of solvation -64.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds