Wall clock time and date at job start Wed Apr 15 2020 11:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39802 * 120.04561 * 256.10328 * 3 2 1 5 5 C 1.37751 * 120.05775 * 179.70613 * 4 3 2 6 6 C 1.39028 * 120.15237 * 0.55096 * 5 4 3 7 7 N 1.39328 * 119.95512 * 179.72299 * 6 5 4 8 8 C 1.38623 * 119.99598 * 42.38050 * 7 6 5 9 9 C 1.38832 * 120.30635 * 6.29752 * 8 7 6 10 10 C 1.38099 * 120.02365 * 180.02562 * 9 8 7 11 11 C 1.38941 * 120.63367 * 0.02562 * 10 9 8 12 12 C 1.36418 * 120.61405 * 359.97438 * 11 10 9 13 13 C 1.40742 * 119.95147 * 0.27850 * 12 11 10 14 14 C 1.41005 * 120.30955 * 179.72610 * 13 12 11 15 15 H 1.07995 * 119.99659 * 205.38234 * 14 13 12 16 16 C 1.39901 * 119.99860 * 25.37543 * 14 13 12 17 17 N 1.30894 * 119.99988 * 12.92811 * 16 14 13 18 18 Si 1.86800 * 119.99744 * 192.92655 * 16 14 13 19 19 H 1.48500 * 109.47247 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46986 * 120.00474 * 18 16 14 21 21 H 1.48503 * 109.46858 * 239.99882 * 18 16 14 22 22 C 1.39803 * 120.08677 * 359.44981 * 6 5 4 23 23 N 1.39925 * 120.02834 * 180.29814 * 22 6 5 24 24 C 1.38260 * 119.94399 * 0.27347 * 22 6 5 25 25 H 1.07998 * 119.97061 * 359.97438 * 4 3 2 26 26 H 1.08001 * 119.92077 * 180.27575 * 5 4 3 27 27 H 0.96990 * 120.00001 * 222.37975 * 7 6 5 28 28 H 1.08006 * 119.98374 * 0.04012 * 9 8 7 29 29 H 1.08000 * 119.68254 * 180.02562 * 10 9 8 30 30 H 1.08000 * 119.69078 * 179.97438 * 11 10 9 31 31 H 1.08003 * 120.02015 * 180.02562 * 12 11 10 32 32 H 0.96999 * 119.99536 * 179.97438 * 17 16 14 33 33 H 0.96998 * 119.99808 * 359.97438 * 23 22 6 34 34 H 0.96999 * 119.99898 * 180.02562 * 23 22 6 35 35 H 1.07996 * 120.07880 * 179.97438 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2679 0.2916 1.1747 5 6 4.6454 0.2864 1.1765 6 6 5.3441 0.0032 0.0084 7 7 6.7374 0.0047 0.0135 8 6 7.4272 -0.5720 1.0686 9 6 6.7428 -1.2663 2.0570 10 6 7.4358 -1.8381 3.1058 11 6 8.8184 -1.7262 3.1854 12 6 9.5169 -1.0499 2.2285 13 6 8.8356 -0.4528 1.1514 14 6 9.5495 0.2529 0.1612 15 1 9.0594 1.0290 -0.4079 16 6 10.8927 -0.0521 -0.0839 17 7 11.4170 -1.1439 0.4125 18 14 11.9378 1.0987 -1.1197 19 1 11.1150 2.2544 -1.5586 20 1 13.0851 1.5864 -0.3128 21 1 12.4443 0.3703 -2.3106 22 6 4.6506 -0.2886 -1.1699 23 7 5.3551 -0.5795 -2.3433 24 6 3.2680 -0.2900 -1.1746 25 1 2.7280 0.5164 2.0827 26 1 5.1838 0.5071 2.0864 27 1 7.2246 0.4092 -0.7212 28 1 5.6680 -1.3594 2.0055 29 1 6.8979 -2.3773 3.8715 30 1 9.3450 -2.1790 4.0125 31 1 10.5916 -0.9693 2.2996 32 1 12.3482 -1.3555 0.2422 33 1 6.3251 -0.5784 -2.3395 34 1 4.8735 -0.7816 -3.1607 35 1 2.7301 -0.5147 -2.0837 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001213364001.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:53 Heat of formation + Delta-G solvation = 68.768313 kcal Electronic energy + Delta-G solvation = -20181.815996 eV Core-core repulsion = 17143.636770 eV Total energy + Delta-G solvation = -3038.179226 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.10660 -39.38258 -37.68379 -35.91116 -35.48802 -35.14783 -31.91590 -30.79146 -30.05745 -28.89977 -26.99478 -24.40805 -23.60082 -22.36233 -21.77008 -19.79711 -19.03872 -18.48672 -17.85320 -17.44505 -16.60356 -16.28812 -15.88787 -15.42380 -15.08997 -14.95519 -14.63469 -14.46374 -14.32088 -14.25440 -13.88429 -13.49498 -13.43860 -13.14365 -12.92702 -12.77863 -12.68667 -12.26773 -12.11033 -11.53015 -11.41258 -11.31370 -11.17202 -11.00554 -9.59834 -9.22936 -8.69144 -8.47872 -7.78317 -6.09504 -0.07669 0.68122 1.06208 1.30879 1.43966 1.55245 1.56286 1.71699 2.09864 2.25260 2.72328 2.87884 2.89505 3.07855 3.27768 3.84576 4.02481 4.33372 4.49088 4.53126 4.66960 4.70506 4.86023 5.01987 5.08619 5.15437 5.35986 5.38042 5.48194 5.54015 5.64287 5.81378 5.93183 6.00475 6.31524 6.36023 6.51455 6.56531 6.65398 6.89176 6.97675 7.05681 7.18654 7.23538 8.45935 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.021694 B = 0.004780 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.361986 B = 5856.836798 C = 6829.728407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C 0.291 3.709 3 C -0.033 4.033 4 C -0.085 4.085 5 C -0.130 4.130 6 C 0.135 3.865 7 N -0.665 5.665 8 C 0.081 3.919 9 C -0.163 4.163 10 C -0.198 4.198 11 C -0.150 4.150 12 C -0.164 4.164 13 C 0.045 3.955 14 C -0.487 4.487 15 H 0.078 0.922 16 C 0.034 3.966 17 N -0.835 5.835 18 Si 0.975 3.025 19 H -0.256 1.256 20 H -0.275 1.275 21 H -0.272 1.272 22 C 0.172 3.828 23 N -0.870 5.870 24 C -0.120 4.120 25 H 0.146 0.854 26 H 0.130 0.870 27 H 0.404 0.596 28 H 0.126 0.874 29 H 0.115 0.885 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.282 0.718 33 H 0.399 0.601 34 H 0.410 0.590 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.578 2.315 -4.142 8.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C -0.023 4.023 3 C -0.039 4.039 4 C -0.108 4.108 5 C -0.152 4.152 6 C 0.031 3.969 7 N -0.289 5.289 8 C -0.016 4.016 9 C -0.184 4.184 10 C -0.218 4.218 11 C -0.169 4.169 12 C -0.185 4.185 13 C 0.041 3.959 14 C -0.518 4.518 15 H 0.096 0.904 16 C -0.179 4.179 17 N -0.463 5.463 18 Si 0.798 3.202 19 H -0.179 1.179 20 H -0.200 1.200 21 H -0.197 1.197 22 C 0.065 3.935 23 N -0.412 5.412 24 C -0.146 4.146 25 H 0.163 0.837 26 H 0.148 0.852 27 H 0.241 0.759 28 H 0.144 0.856 29 H 0.133 0.867 30 H 0.118 0.882 31 H 0.122 0.878 32 H 0.092 0.908 33 H 0.227 0.773 34 H 0.240 0.760 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -9.174 2.147 -4.055 10.257 hybrid contribution 1.831 0.263 -0.776 2.006 sum -7.342 2.410 -4.831 9.113 Atomic orbital electron populations 1.81236 1.13196 1.11530 1.09260 1.25791 0.92563 0.91866 0.92047 1.15567 0.83046 1.09764 0.95489 1.20823 0.92716 1.00103 0.97170 1.20879 0.93901 1.02149 0.98253 1.17757 0.83490 1.01430 0.94179 1.41278 1.02011 1.61874 1.23703 1.17937 0.91218 1.00783 0.91699 1.20747 0.99210 1.02442 0.96026 1.20578 0.93632 1.06829 1.00735 1.20612 0.94768 1.02216 0.99304 1.20971 0.99543 1.03179 0.94778 1.17552 0.89885 0.94930 0.93582 1.19436 0.96087 1.18130 1.18113 0.90353 1.26561 0.99208 0.95596 0.96489 1.69910 1.14979 1.22332 1.39032 0.85248 0.78102 0.78923 0.77959 1.17948 1.20007 1.19679 1.17478 0.90993 0.97434 0.87610 1.42301 1.09112 1.80652 1.09151 1.20389 0.90834 1.05256 0.98134 0.83655 0.85247 0.75888 0.85622 0.86662 0.88172 0.87835 0.90774 0.77271 0.75954 0.83257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -13.45 18.54 19.00 0.35 -13.10 16 2 C 0.29 7.04 15.32 88.33 1.35 8.39 16 3 C -0.03 -0.73 5.74 -21.28 -0.12 -0.85 16 4 C -0.09 -1.91 9.74 22.53 0.22 -1.69 16 5 C -0.13 -3.52 7.32 22.34 0.16 -3.36 16 6 C 0.14 3.96 5.89 38.52 0.23 4.19 16 7 N -0.67 -23.36 4.86 -178.90 -0.87 -24.23 16 8 C 0.08 3.48 6.46 39.04 0.25 3.73 16 9 C -0.16 -6.51 8.03 22.38 0.18 -6.33 16 10 C -0.20 -8.09 10.03 22.41 0.22 -7.87 16 11 C -0.15 -6.72 9.96 22.01 0.22 -6.50 16 12 C -0.16 -8.27 8.63 22.46 0.19 -8.07 16 13 C 0.04 2.20 5.60 -21.16 -0.12 2.08 16 14 C -0.49 -23.48 8.47 23.35 0.20 -23.28 16 15 H 0.08 3.52 6.77 -2.91 -0.02 3.50 16 16 C 0.03 1.62 5.24 85.24 0.45 2.07 16 17 N -0.83 -41.85 10.73 21.82 0.23 -41.61 16 18 Si 0.98 36.07 29.58 68.60 2.03 38.10 16 19 H -0.26 -9.08 7.11 99.48 0.71 -8.37 16 20 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 21 H -0.27 -9.76 7.11 99.48 0.71 -9.06 16 22 C 0.17 4.15 6.77 38.23 0.26 4.41 16 23 N -0.87 -17.67 9.08 -51.06 -0.46 -18.14 16 24 C -0.12 -2.49 9.59 22.65 0.22 -2.27 16 25 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 26 H 0.13 3.80 6.63 -2.91 -0.02 3.78 16 27 H 0.40 13.90 6.33 -92.72 -0.59 13.31 16 28 H 0.13 4.42 5.29 -2.91 -0.02 4.40 16 29 H 0.12 4.03 8.06 -2.91 -0.02 4.00 16 30 H 0.10 4.06 8.06 -2.91 -0.02 4.04 16 31 H 0.10 5.56 6.03 -2.91 -0.02 5.54 16 32 H 0.28 12.96 8.30 -92.71 -0.77 12.20 16 33 H 0.40 8.95 7.60 -92.71 -0.70 8.25 16 34 H 0.41 5.91 8.84 -92.71 -0.82 5.09 16 35 H 0.15 2.38 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -56.36 304.91 4.27 -52.09 By element: Atomic # 1 Polarization: 43.16 SS G_CDS: -0.93 Total: 42.24 kcal Atomic # 6 Polarization: -39.26 SS G_CDS: 3.91 Total: -35.35 kcal Atomic # 7 Polarization: -96.33 SS G_CDS: -0.75 Total: -97.08 kcal Atomic # 14 Polarization: 36.07 SS G_CDS: 2.03 Total: 38.10 kcal Total: -56.36 4.27 -52.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213364001.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.862 kcal (2) G-P(sol) polarization free energy of solvation -56.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds