Wall clock time and date at job start Wed Apr 15 2020 11:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86806 * 119.99588 * 2 1 4 4 H 1.48500 * 109.47002 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46961 * 299.99902 * 3 2 1 6 6 H 1.48502 * 109.47265 * 60.00074 * 3 2 1 7 7 C 1.39962 * 120.00586 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00633 * 197.97907 * 7 2 1 9 9 C 1.41003 * 119.99588 * 17.97905 * 7 2 1 10 10 C 1.40949 * 120.11458 * 24.69817 * 9 7 2 11 11 C 1.36223 * 119.88132 * 180.02562 * 10 9 7 12 12 C 1.39988 * 120.11762 * 359.97354 * 11 10 9 13 13 C 1.47909 * 119.88574 * 180.02562 * 12 11 10 14 14 C 1.40278 * 119.92574 * 359.97438 * 13 12 11 15 15 C 1.36207 * 120.65727 * 179.97438 * 14 13 12 16 16 C 1.39556 * 120.19479 * 359.97438 * 15 14 13 17 17 N 1.36931 * 133.48009 * 179.97438 * 16 15 14 18 18 H 0.96996 * 125.36270 * 359.96124 * 17 16 15 19 19 N 1.39829 * 109.27839 * 180.22792 * 17 16 15 20 20 C 1.30657 * 110.06676 * 359.59833 * 19 17 16 21 21 N 1.39666 * 126.20550 * 180.15036 * 20 19 17 22 22 C 1.40907 * 119.73109 * 359.97438 * 16 15 14 23 23 C 1.39011 * 119.92997 * 179.97438 * 13 12 11 24 24 C 1.39984 * 120.22755 * 0.27655 * 12 11 10 25 25 C 1.36224 * 120.12200 * 359.48852 * 24 12 11 26 26 H 0.96998 * 120.00476 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.05657 * 359.97438 * 10 9 7 28 28 H 1.07994 * 119.93950 * 180.02562 * 11 10 9 29 29 H 1.08004 * 119.67327 * 359.97438 * 14 13 12 30 30 H 1.08008 * 119.89962 * 179.97438 * 15 14 13 31 31 H 0.96998 * 119.99835 * 180.28620 * 21 20 19 32 32 H 0.97003 * 120.00331 * 0.28610 * 21 20 19 33 33 H 1.08002 * 120.28691 * 359.97438 * 23 13 12 34 34 H 1.08003 * 119.94124 * 179.74716 * 24 12 11 35 35 H 1.07997 * 120.06071 * 180.25233 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6179 0.0000 4 1 3.7022 1.3466 -0.0006 5 1 1.8833 2.3965 -1.2125 6 1 1.8834 2.3966 1.2125 7 6 2.0082 -1.2120 0.0005 8 1 3.0486 -1.2348 0.2892 9 6 1.3548 -2.4035 -0.3759 10 6 0.2274 -2.3554 -1.2204 11 6 -0.4004 -3.5094 -1.5807 12 6 0.0725 -4.7416 -1.1140 13 6 -0.6128 -5.9914 -1.5089 14 6 -1.7348 -5.9389 -2.3492 15 6 -2.3770 -7.0806 -2.7225 16 6 -1.9231 -8.3208 -2.2713 17 7 -2.3469 -9.6079 -2.4683 18 1 -3.1077 -9.8718 -3.0090 19 7 -1.5139 -10.4814 -1.7624 20 6 -0.5835 -9.8082 -1.1392 21 7 0.4273 -10.3450 -0.3387 22 6 -0.7965 -8.3879 -1.4277 23 6 -0.1436 -7.2155 -1.0465 24 6 1.1886 -4.7945 -0.2708 25 6 1.8267 -3.6467 0.0916 26 1 -0.4851 0.8400 0.0004 27 1 -0.1384 -1.4053 -1.5806 28 1 -1.2641 -3.4737 -2.2281 29 1 -2.0931 -4.9837 -2.7036 30 1 -3.2400 -7.0260 -3.3696 31 1 1.0720 -9.7583 0.0867 32 1 0.4846 -11.3045 -0.2082 33 1 0.7203 -7.2587 -0.3998 34 1 1.5471 -5.7473 0.0898 35 1 2.6901 -3.6891 0.7389 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241717452.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:02 Heat of formation + Delta-G solvation = 98.182786 kcal Electronic energy + Delta-G solvation = -19754.160385 eV Core-core repulsion = 16717.256666 eV Total energy + Delta-G solvation = -3036.903719 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.81333 -38.08941 -36.39989 -34.60387 -33.76148 -31.16207 -30.58648 -29.51518 -29.01282 -27.92617 -25.01231 -22.97856 -22.08945 -20.87124 -20.42303 -19.89791 -17.77599 -17.32521 -17.02852 -15.73622 -15.48712 -15.37396 -14.76582 -14.64711 -14.18696 -13.64554 -13.36212 -13.13488 -12.88065 -12.31249 -12.13204 -11.98337 -11.54001 -11.31401 -11.15862 -11.04353 -10.82054 -10.55259 -10.50916 -10.39748 -9.76046 -9.41279 -9.28384 -8.87730 -8.42167 -7.67641 -7.61489 -6.96006 -6.70514 -4.41378 1.36787 1.67837 2.75232 2.84985 2.94044 2.99695 3.05017 3.07096 3.18512 3.81509 3.84444 4.20917 4.67062 4.80013 5.04795 5.41590 5.51914 5.65416 5.69863 5.81829 6.09644 6.11340 6.32526 6.43459 6.46088 6.73165 6.82348 6.89028 6.97922 7.15610 7.22394 7.33190 7.38090 7.46977 7.52567 7.72579 7.85385 7.94362 8.06975 8.16322 8.19036 8.50404 8.73662 8.85542 10.00218 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.040383 B = 0.003469 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.196664 B = 8070.603227 C = 8683.084368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.074 3.926 3 Si 0.910 3.090 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.449 4.449 8 H 0.081 0.919 9 C 0.117 3.883 10 C -0.170 4.170 11 C -0.080 4.080 12 C -0.195 4.195 13 C -0.021 4.021 14 C -0.072 4.072 15 C -0.148 4.148 16 C 0.122 3.878 17 N -0.518 5.518 18 H 0.434 0.566 19 N -0.333 5.333 20 C 0.355 3.645 21 N -0.837 5.837 22 C -0.180 4.180 23 C -0.072 4.072 24 C -0.068 4.068 25 C -0.229 4.229 26 H 0.283 0.717 27 H 0.118 0.882 28 H 0.092 0.908 29 H 0.129 0.871 30 H 0.119 0.881 31 H 0.412 0.588 32 H 0.403 0.597 33 H 0.121 0.879 34 H 0.091 0.909 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.925 -10.268 -2.583 10.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.477 4.477 8 H 0.100 0.900 9 C 0.114 3.886 10 C -0.189 4.189 11 C -0.098 4.098 12 C -0.196 4.196 13 C -0.023 4.023 14 C -0.093 4.093 15 C -0.170 4.170 16 C 0.007 3.993 17 N -0.235 5.235 18 H 0.278 0.722 19 N -0.160 5.160 20 C 0.084 3.916 21 N -0.390 5.390 22 C -0.190 4.190 23 C -0.093 4.093 24 C -0.086 4.086 25 C -0.249 4.249 26 H 0.094 0.906 27 H 0.136 0.864 28 H 0.110 0.890 29 H 0.146 0.854 30 H 0.137 0.863 31 H 0.242 0.758 32 H 0.232 0.768 33 H 0.139 0.861 34 H 0.109 0.891 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.652 -11.188 -2.845 11.845 hybrid contribution 0.403 1.267 0.158 1.339 sum -2.249 -9.921 -2.687 10.522 Atomic orbital electron populations 1.69833 1.07728 1.29583 1.33262 1.26005 0.94773 1.01645 0.92128 0.86230 0.81065 0.80599 0.78735 1.18219 1.19521 1.19827 1.19708 0.98356 0.91363 1.38313 0.90049 1.17724 0.90852 0.92076 0.87965 1.20990 0.99611 0.96971 1.01377 1.20508 0.98083 0.92383 0.98837 1.17981 1.01420 0.90618 1.09563 1.18697 0.94619 0.92627 0.96330 1.20871 0.94636 0.97455 0.96308 1.19635 1.02804 0.89196 1.05371 1.18663 0.95465 0.86867 0.98347 1.45115 1.29659 1.01160 1.47517 0.72212 1.76457 1.07050 1.15721 1.16767 1.20179 0.89985 0.89132 0.92271 1.41240 1.31951 1.10130 1.55648 1.19358 1.00859 0.91853 1.06929 1.20503 0.99299 0.89605 0.99865 1.20358 0.94942 0.96586 0.96727 1.20669 1.04091 0.92925 1.07167 0.90567 0.86416 0.89021 0.85360 0.86322 0.75787 0.76783 0.86096 0.89096 0.88833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.16 10.96 55.55 0.61 -18.55 16 2 C 0.07 1.76 5.13 -17.34 -0.09 1.68 16 3 Si 0.91 17.65 29.60 -169.99 -5.03 12.62 16 4 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 5 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 6 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.45 -11.33 9.03 -37.89 -0.34 -11.67 16 8 H 0.08 1.97 7.91 -52.49 -0.42 1.55 16 9 C 0.12 2.97 5.57 -106.80 -0.60 2.38 16 10 C -0.17 -4.22 8.63 -39.28 -0.34 -4.56 16 11 C -0.08 -1.78 9.35 -39.65 -0.37 -2.15 16 12 C -0.19 -4.18 5.90 -104.63 -0.62 -4.80 16 13 C -0.02 -0.39 5.88 -104.88 -0.62 -1.01 16 14 C -0.07 -1.21 9.34 -39.55 -0.37 -1.58 16 15 C -0.15 -2.19 10.01 -39.82 -0.40 -2.59 16 16 C 0.12 1.91 7.33 -84.09 -0.62 1.29 16 17 N -0.52 -7.30 7.35 32.41 0.24 -7.06 16 18 H 0.43 4.65 8.96 -182.81 -1.64 3.01 16 19 N -0.33 -5.10 12.56 32.58 0.41 -4.69 16 20 C 0.35 5.27 8.70 -152.84 -1.33 3.94 16 21 N -0.84 -8.90 9.13 32.54 0.30 -8.61 16 22 C -0.18 -2.98 6.36 -105.10 -0.67 -3.65 16 23 C -0.07 -1.24 9.48 -38.83 -0.37 -1.61 16 24 C -0.07 -1.46 9.35 -39.65 -0.37 -1.83 16 25 C -0.23 -5.37 9.73 -39.28 -0.38 -5.76 16 26 H 0.28 6.27 8.30 -40.82 -0.34 5.93 16 27 H 0.12 3.00 6.16 -52.49 -0.32 2.67 16 28 H 0.09 1.82 6.15 -52.49 -0.32 1.49 16 29 H 0.13 1.99 6.14 -52.48 -0.32 1.66 16 30 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 31 H 0.41 3.66 8.96 -40.82 -0.37 3.29 16 32 H 0.40 3.41 8.96 -40.82 -0.37 3.04 16 33 H 0.12 1.89 6.16 -52.49 -0.32 1.57 16 34 H 0.09 1.69 6.16 -52.48 -0.32 1.36 16 35 H 0.09 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 300.68 15.07 4.53 4.53 Total: -1.00 -28.84 300.68 -10.80 -39.64 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -4.38 Total: 14.03 kcal Atomic # 6 Polarization: -24.45 SS G_CDS: -7.47 Total: -31.92 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: 1.55 Total: -38.90 kcal Atomic # 14 Polarization: 17.65 SS G_CDS: -5.03 Total: 12.62 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.84 -10.80 -39.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241717452.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.819 kcal (2) G-P(sol) polarization free energy of solvation -28.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds