Wall clock time and date at job start Wed Apr 15 2020 11:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86806 * 119.99588 * 2 1 4 4 H 1.48500 * 109.47002 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46961 * 299.99902 * 3 2 1 6 6 H 1.48502 * 109.47265 * 60.00074 * 3 2 1 7 7 C 1.39962 * 120.00586 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00633 * 197.97907 * 7 2 1 9 9 C 1.41003 * 119.99588 * 17.97905 * 7 2 1 10 10 C 1.40949 * 120.11458 * 24.69817 * 9 7 2 11 11 C 1.36223 * 119.88132 * 180.02562 * 10 9 7 12 12 C 1.39988 * 120.11762 * 359.97354 * 11 10 9 13 13 C 1.47909 * 119.88574 * 180.02562 * 12 11 10 14 14 C 1.40278 * 119.92574 * 359.97438 * 13 12 11 15 15 C 1.36207 * 120.65727 * 179.97438 * 14 13 12 16 16 C 1.39556 * 120.19479 * 359.97438 * 15 14 13 17 17 N 1.36931 * 133.48009 * 179.97438 * 16 15 14 18 18 H 0.96996 * 125.36270 * 359.96124 * 17 16 15 19 19 N 1.39829 * 109.27839 * 180.22792 * 17 16 15 20 20 C 1.30657 * 110.06676 * 359.59833 * 19 17 16 21 21 N 1.39666 * 126.20550 * 180.15036 * 20 19 17 22 22 C 1.40907 * 119.73109 * 359.97438 * 16 15 14 23 23 C 1.39011 * 119.92997 * 179.97438 * 13 12 11 24 24 C 1.39984 * 120.22755 * 0.27655 * 12 11 10 25 25 C 1.36224 * 120.12200 * 359.48852 * 24 12 11 26 26 H 0.96998 * 120.00476 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.05657 * 359.97438 * 10 9 7 28 28 H 1.07994 * 119.93950 * 180.02562 * 11 10 9 29 29 H 1.08004 * 119.67327 * 359.97438 * 14 13 12 30 30 H 1.08008 * 119.89962 * 179.97438 * 15 14 13 31 31 H 0.96998 * 119.99835 * 180.28620 * 21 20 19 32 32 H 0.97003 * 120.00331 * 0.28610 * 21 20 19 33 33 H 1.08002 * 120.28691 * 359.97438 * 23 13 12 34 34 H 1.08003 * 119.94124 * 179.74716 * 24 12 11 35 35 H 1.07997 * 120.06071 * 180.25233 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6179 0.0000 4 1 3.7022 1.3466 -0.0006 5 1 1.8833 2.3965 -1.2125 6 1 1.8834 2.3966 1.2125 7 6 2.0082 -1.2120 0.0005 8 1 3.0486 -1.2348 0.2892 9 6 1.3548 -2.4035 -0.3759 10 6 0.2274 -2.3554 -1.2204 11 6 -0.4004 -3.5094 -1.5807 12 6 0.0725 -4.7416 -1.1140 13 6 -0.6128 -5.9914 -1.5089 14 6 -1.7348 -5.9389 -2.3492 15 6 -2.3770 -7.0806 -2.7225 16 6 -1.9231 -8.3208 -2.2713 17 7 -2.3469 -9.6079 -2.4683 18 1 -3.1077 -9.8718 -3.0090 19 7 -1.5139 -10.4814 -1.7624 20 6 -0.5835 -9.8082 -1.1392 21 7 0.4273 -10.3450 -0.3387 22 6 -0.7965 -8.3879 -1.4277 23 6 -0.1436 -7.2155 -1.0465 24 6 1.1886 -4.7945 -0.2708 25 6 1.8267 -3.6467 0.0916 26 1 -0.4851 0.8400 0.0004 27 1 -0.1384 -1.4053 -1.5806 28 1 -1.2641 -3.4737 -2.2281 29 1 -2.0931 -4.9837 -2.7036 30 1 -3.2400 -7.0260 -3.3696 31 1 1.0720 -9.7583 0.0867 32 1 0.4846 -11.3045 -0.2082 33 1 0.7203 -7.2587 -0.3998 34 1 1.5471 -5.7473 0.0898 35 1 2.6901 -3.6891 0.7389 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241717452.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:01 Heat of formation + Delta-G solvation = 82.244588 kcal Electronic energy + Delta-G solvation = -19754.851517 eV Core-core repulsion = 16717.256666 eV Total energy + Delta-G solvation = -3037.594851 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.01415 -39.71149 -37.81664 -35.75234 -35.36612 -32.59444 -32.06907 -31.09150 -30.32859 -29.38339 -26.66157 -24.35839 -23.55563 -22.24983 -21.94829 -21.31905 -19.36907 -18.69009 -18.22723 -17.33273 -16.73849 -16.52743 -16.17358 -15.82222 -15.71078 -15.16601 -14.75500 -14.62814 -14.47709 -13.89527 -13.73618 -13.52247 -13.04215 -12.81577 -12.65817 -12.53291 -12.22755 -12.00075 -11.95877 -11.68686 -11.43753 -11.10551 -11.00107 -10.07744 -9.83561 -9.41583 -9.04155 -8.67917 -8.12889 -6.25248 0.13097 0.25536 1.18258 1.25789 1.40291 1.54752 1.59941 1.78936 1.81094 2.20779 2.65893 2.81251 3.10170 3.61453 3.84749 3.88611 4.13818 4.20365 4.46155 4.50341 4.54662 4.62068 4.88412 5.09479 5.12077 5.12990 5.23219 5.36436 5.43360 5.44249 5.69053 5.78624 5.87707 6.12375 6.13843 6.34040 6.37562 6.38843 6.44741 6.69470 6.73749 6.92038 7.04983 7.21270 8.29412 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.040383 B = 0.003469 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.196664 B = 8070.603227 C = 8683.084368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.035 3.965 3 Si 0.982 3.018 4 H -0.258 1.258 5 H -0.264 1.264 6 H -0.265 1.265 7 C -0.491 4.491 8 H 0.078 0.922 9 C 0.082 3.918 10 C -0.192 4.192 11 C -0.089 4.089 12 C -0.182 4.182 13 C -0.056 4.056 14 C -0.077 4.077 15 C -0.140 4.140 16 C 0.124 3.876 17 N -0.507 5.507 18 H 0.449 0.551 19 N -0.348 5.348 20 C 0.354 3.646 21 N -0.820 5.820 22 C -0.205 4.205 23 C -0.061 4.061 24 C -0.076 4.076 25 C -0.243 4.243 26 H 0.290 0.710 27 H 0.102 0.898 28 H 0.114 0.886 29 H 0.136 0.864 30 H 0.154 0.846 31 H 0.421 0.579 32 H 0.415 0.585 33 H 0.132 0.868 34 H 0.122 0.878 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.521 -12.169 -3.113 12.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.181 4.181 3 Si 0.803 3.197 4 H -0.181 1.181 5 H -0.188 1.188 6 H -0.190 1.190 7 C -0.520 4.520 8 H 0.096 0.904 9 C 0.080 3.920 10 C -0.211 4.211 11 C -0.107 4.107 12 C -0.183 4.183 13 C -0.058 4.058 14 C -0.097 4.097 15 C -0.162 4.162 16 C 0.008 3.992 17 N -0.225 5.225 18 H 0.295 0.705 19 N -0.177 5.177 20 C 0.083 3.917 21 N -0.375 5.375 22 C -0.214 4.214 23 C -0.081 4.081 24 C -0.094 4.094 25 C -0.263 4.263 26 H 0.101 0.899 27 H 0.120 0.880 28 H 0.132 0.868 29 H 0.154 0.846 30 H 0.172 0.828 31 H 0.253 0.747 32 H 0.247 0.753 33 H 0.150 0.850 34 H 0.139 0.861 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.247 -13.141 -3.368 13.949 hybrid contribution 0.460 1.453 0.261 1.546 sum -2.786 -11.688 -3.107 12.411 Atomic orbital electron populations 1.69876 1.09058 1.30755 1.34469 1.26795 0.95485 1.04602 0.91175 0.85153 0.79468 0.76091 0.78991 1.18127 1.18830 1.19026 1.19898 0.98538 0.92630 1.40887 0.90421 1.18061 0.91797 0.93144 0.88998 1.20969 1.00463 0.97239 1.02455 1.20773 0.98652 0.92148 0.99128 1.18335 1.00676 0.91561 1.07694 1.18649 0.96351 0.91872 0.98949 1.21004 0.94134 0.98639 0.95899 1.19905 1.03273 0.88067 1.04954 1.18931 0.95064 0.87701 0.97526 1.45195 1.29767 1.00461 1.47049 0.70458 1.76466 1.07629 1.16025 1.17577 1.20384 0.90492 0.88507 0.92356 1.41291 1.30822 1.11101 1.54312 1.19577 1.01581 0.92435 1.07840 1.20606 0.99177 0.89360 0.98999 1.20686 0.94848 0.97265 0.96605 1.20877 1.04683 0.93161 1.07571 0.89911 0.88020 0.86829 0.84598 0.82850 0.74690 0.75349 0.85015 0.86057 0.88228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.73 10.96 21.83 0.24 -41.49 16 2 C 0.04 1.75 5.13 85.26 0.44 2.18 16 3 Si 0.98 37.15 29.60 68.60 2.03 39.18 16 4 H -0.26 -9.56 7.11 99.48 0.71 -8.86 16 5 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 6 H -0.27 -9.61 7.11 99.48 0.71 -8.90 16 7 C -0.49 -26.00 9.03 23.37 0.21 -25.79 16 8 H 0.08 3.97 7.91 -2.91 -0.02 3.94 16 9 C 0.08 4.39 5.57 -21.27 -0.12 4.28 16 10 C -0.19 -9.93 8.63 22.46 0.19 -9.73 16 11 C -0.09 -4.03 9.35 22.22 0.21 -3.82 16 12 C -0.18 -7.72 5.90 -19.87 -0.12 -7.83 16 13 C -0.06 -2.02 5.88 -20.03 -0.12 -2.14 16 14 C -0.08 -2.38 9.34 22.29 0.21 -2.17 16 15 C -0.14 -3.68 10.01 22.11 0.22 -3.46 16 16 C 0.12 3.52 7.33 39.32 0.29 3.81 16 17 N -0.51 -12.64 7.35 -51.37 -0.38 -13.01 16 18 H 0.45 8.07 8.96 -213.50 -1.91 6.15 16 19 N -0.35 -9.65 12.56 -50.82 -0.64 -10.29 16 20 C 0.35 9.48 8.70 135.28 1.18 10.65 16 21 N -0.82 -15.04 9.13 -50.98 -0.47 -15.50 16 22 C -0.20 -6.19 6.36 -20.17 -0.13 -6.32 16 23 C -0.06 -1.97 9.48 22.76 0.22 -1.75 16 24 C -0.08 -3.26 9.35 22.22 0.21 -3.05 16 25 C -0.24 -11.73 9.73 22.47 0.22 -11.52 16 26 H 0.29 13.29 8.30 -92.71 -0.77 12.52 16 27 H 0.10 5.48 6.16 -2.91 -0.02 5.46 16 28 H 0.11 4.49 6.15 -2.91 -0.02 4.47 16 29 H 0.14 3.94 6.14 -2.91 -0.02 3.92 16 30 H 0.15 2.93 8.06 -2.91 -0.02 2.90 16 31 H 0.42 6.24 8.96 -92.71 -0.83 5.41 16 32 H 0.42 5.78 8.96 -92.71 -0.83 4.95 16 33 H 0.13 3.80 6.16 -2.91 -0.02 3.78 16 34 H 0.12 4.32 6.16 -2.91 -0.02 4.30 16 35 H 0.10 4.50 8.06 -2.91 -0.02 4.48 16 Total: -1.00 -63.64 300.68 1.51 -62.13 By element: Atomic # 1 Polarization: 38.04 SS G_CDS: -2.38 Total: 35.66 kcal Atomic # 6 Polarization: -59.77 SS G_CDS: 3.11 Total: -56.66 kcal Atomic # 7 Polarization: -79.05 SS G_CDS: -1.24 Total: -80.29 kcal Atomic # 14 Polarization: 37.15 SS G_CDS: 2.03 Total: 39.18 kcal Total: -63.64 1.51 -62.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241717452.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.371 kcal (2) G-P(sol) polarization free energy of solvation -63.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds