Wall clock time and date at job start Wed Apr 15 2020 11:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00122 * 2 1 4 4 H 1.48506 * 109.47375 * 270.00154 * 3 2 1 5 5 H 1.48499 * 109.47221 * 29.99879 * 3 2 1 6 6 H 1.48502 * 109.47236 * 149.99970 * 3 2 1 7 7 C 1.37881 * 120.00059 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99563 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99871 * 179.97438 * 7 2 1 10 10 N 1.46905 * 109.46985 * 179.97438 * 9 7 2 11 11 C 1.46900 * 111.00199 * 180.02562 * 10 9 7 12 12 H 1.09003 * 110.53346 * 36.16308 * 11 10 9 13 13 C 1.54890 * 110.48546 * 273.55231 * 11 10 9 14 14 C 1.54887 * 102.91108 * 203.47152 * 13 11 10 15 15 C 1.54265 * 104.20056 * 37.84875 * 14 13 11 16 16 H 1.08997 * 110.03098 * 95.72357 * 15 14 13 17 17 C 1.50704 * 110.03355 * 217.10574 * 15 14 13 18 18 C 1.38258 * 119.99319 * 238.54418 * 17 15 14 19 19 C 1.38219 * 120.02493 * 180.02562 * 18 17 15 20 20 C 1.38234 * 120.01447 * 359.97438 * 19 18 17 21 21 C 1.38323 * 119.98552 * 0.02562 * 20 19 18 22 22 Cl 1.73596 * 120.01252 * 180.02562 * 21 20 19 23 23 C 1.38192 * 119.99087 * 58.26744 * 17 15 14 24 24 C 1.53877 * 106.59605 * 336.39127 * 15 14 13 25 25 H 0.97001 * 119.99901 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46678 * 60.00761 * 9 7 2 27 27 H 1.08993 * 109.47436 * 300.00102 * 9 7 2 28 28 H 1.00894 * 110.99961 * 303.96398 * 10 9 7 29 29 H 1.09002 * 110.75897 * 85.06270 * 13 11 10 30 30 H 1.09006 * 110.75292 * 321.87499 * 13 11 10 31 31 H 1.09004 * 110.48468 * 156.53190 * 14 13 11 32 32 H 1.09006 * 110.48476 * 279.16949 * 14 13 11 33 33 H 1.08004 * 119.98445 * 359.97438 * 18 17 15 34 34 H 1.08004 * 119.98992 * 179.97438 * 19 18 17 35 35 H 1.08003 * 120.00216 * 180.02562 * 20 19 18 36 36 H 1.07997 * 120.00729 * 0.02562 * 23 17 15 37 37 H 1.08999 * 110.03493 * 119.28247 * 24 15 14 38 38 H 1.08997 * 110.03317 * 240.71381 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 7 4.0012 -2.5791 0.0013 11 6 5.4697 -2.6183 0.0014 12 1 5.8739 -1.8041 0.6030 13 6 6.0140 -2.5443 -1.4468 14 6 7.4156 -3.1919 -1.3233 15 6 7.2127 -4.3441 -0.3177 16 1 7.0385 -5.2787 -0.8509 17 6 8.4240 -4.4744 0.5694 18 6 9.1257 -5.6650 0.6106 19 6 10.2364 -5.7854 1.4243 20 6 10.6467 -4.7151 2.1971 21 6 9.9451 -3.5238 2.1563 22 17 10.4601 -2.1791 3.1260 23 6 8.8365 -3.4020 1.3371 24 6 5.9785 -3.9792 0.5257 25 1 -0.4850 0.8401 0.0004 26 1 3.8751 -0.6797 0.8896 27 1 3.8745 -0.6808 -0.8904 28 1 3.6259 -3.0945 0.7833 29 1 6.0948 -1.5086 -1.7768 30 1 5.3826 -3.1166 -2.1265 31 1 7.7426 -3.5804 -2.2878 32 1 8.1362 -2.4710 -0.9371 33 1 8.8052 -6.5015 0.0072 34 1 10.7839 -6.7158 1.4564 35 1 11.5149 -4.8093 2.8326 36 1 8.2907 -2.4707 1.3018 37 1 5.2044 -4.7365 0.4018 38 1 6.2556 -3.8964 1.5766 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567697647.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:36 Heat of formation + Delta-G solvation = 0.619935 kcal Electronic energy + Delta-G solvation = -18887.712342 eV Core-core repulsion = 15947.685475 eV Total energy + Delta-G solvation = -2940.026868 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.07993 -37.94882 -36.60520 -34.48043 -32.38275 -31.10883 -30.96149 -28.61044 -27.59327 -25.38428 -23.08222 -22.40773 -21.32696 -19.88819 -19.67975 -17.34516 -16.77538 -15.99746 -15.60981 -15.15096 -14.87282 -14.38998 -13.98472 -13.86769 -13.77630 -13.40772 -13.13870 -12.50486 -12.31764 -12.15728 -11.84792 -11.69701 -11.58135 -11.26392 -11.13653 -10.85935 -10.74246 -10.73325 -10.51184 -10.35583 -10.25186 -9.79171 -9.25869 -9.06863 -8.85437 -8.58604 -7.47721 -6.05659 -4.03443 0.93322 1.03237 1.92633 3.28998 3.36187 3.37972 3.38740 4.39446 4.42328 4.51877 4.75539 4.79003 4.83705 4.96339 5.03404 5.16622 5.27498 5.39738 5.42078 5.56613 5.65705 5.68821 5.74096 5.83143 5.96187 5.96558 6.04866 6.09619 6.20029 6.30916 6.40998 6.45305 6.57157 6.61396 6.83918 7.03458 7.62770 7.92726 8.34814 8.65978 9.02492 9.56568 11.07677 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.022287 B = 0.003762 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.029487 B = 7441.529862 C = 8212.553683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.516 4.516 8 H 0.079 0.921 9 C 0.164 3.836 10 N -0.673 5.673 11 C 0.079 3.921 12 H 0.038 0.962 13 C -0.112 4.112 14 C -0.116 4.116 15 C -0.051 4.051 16 H 0.084 0.916 17 C -0.053 4.053 18 C -0.116 4.116 19 C -0.107 4.107 20 C -0.121 4.121 21 C -0.032 4.032 22 Cl -0.074 7.074 23 C -0.105 4.105 24 C -0.118 4.118 25 H 0.264 0.736 26 H -0.017 1.017 27 H 0.022 0.978 28 H 0.335 0.665 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.134 0.866 37 H 0.078 0.922 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.230 -10.539 2.404 25.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.704 3.296 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.554 4.554 8 H 0.097 0.903 9 C 0.036 3.964 10 N -0.303 5.303 11 C -0.032 4.032 12 H 0.056 0.944 13 C -0.150 4.150 14 C -0.154 4.154 15 C -0.070 4.070 16 H 0.102 0.898 17 C -0.053 4.053 18 C -0.134 4.134 19 C -0.125 4.125 20 C -0.140 4.140 21 C -0.058 4.058 22 Cl -0.045 7.045 23 C -0.124 4.124 24 C -0.155 4.155 25 H 0.073 0.927 26 H 0.001 0.999 27 H 0.040 0.960 28 H 0.153 0.847 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.146 0.854 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.152 0.848 37 H 0.096 0.904 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 23.050 -10.354 1.819 25.334 hybrid contribution 0.637 1.388 1.060 1.859 sum 23.687 -8.966 2.878 25.490 Atomic orbital electron populations 1.69901 1.06157 1.26860 1.51056 1.24908 0.94742 0.98940 0.94749 0.86835 0.80271 0.83887 0.78602 1.20126 1.21210 1.19281 1.21074 0.89012 0.94778 1.50529 0.90311 1.20024 0.96537 0.85146 0.94672 1.60587 1.03835 1.16753 1.49136 1.22402 0.90245 0.95045 0.95515 0.94428 1.22517 0.94404 1.00559 0.97545 1.22489 0.98197 0.96492 0.98228 1.20796 0.91342 1.00090 0.94794 0.89787 1.19976 0.96305 0.92765 0.96242 1.21215 0.95450 0.97483 0.99247 1.21085 0.96925 0.98309 0.96187 1.21011 1.00399 0.91826 1.00784 1.20937 0.97714 0.89786 0.97381 1.98377 1.90411 1.45627 1.70121 1.20979 0.95549 1.00022 0.95846 1.22451 0.96288 0.98221 0.98588 0.92663 0.99937 0.95997 0.84680 0.92011 0.90268 0.91519 0.91650 0.85402 0.85231 0.85242 0.84790 0.90363 0.91944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.85 13.96 55.43 0.77 -27.07 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 21.79 27.47 -169.99 -4.67 17.12 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 7 C -0.52 -14.83 9.87 -34.44 -0.34 -15.17 16 8 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 9 C 0.16 4.00 4.36 -4.97 -0.02 3.98 16 10 N -0.67 -13.68 6.29 -106.13 -0.67 -14.35 16 11 C 0.08 1.28 3.18 -65.95 -0.21 1.07 16 12 H 0.04 0.64 7.88 -51.93 -0.41 0.24 16 13 C -0.11 -1.65 6.49 -24.74 -0.16 -1.81 16 14 C -0.12 -1.34 6.27 -25.07 -0.16 -1.50 16 15 C -0.05 -0.56 3.13 -90.65 -0.28 -0.85 16 16 H 0.08 0.83 7.91 -51.93 -0.41 0.42 16 17 C -0.05 -0.55 4.69 -104.63 -0.49 -1.04 16 18 C -0.12 -1.04 9.68 -39.58 -0.38 -1.42 16 19 C -0.11 -0.87 10.05 -39.59 -0.40 -1.27 16 20 C -0.12 -1.11 9.83 -39.55 -0.39 -1.49 16 21 C -0.03 -0.34 6.32 -39.50 -0.25 -0.59 16 22 Cl -0.07 -0.79 28.96 -51.86 -1.50 -2.30 16 23 C -0.11 -1.19 7.87 -39.55 -0.31 -1.50 16 24 C -0.12 -1.53 5.73 -25.51 -0.15 -1.68 16 25 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 26 H -0.02 -0.42 7.14 -51.93 -0.37 -0.79 16 27 H 0.02 0.54 7.55 -51.93 -0.39 0.15 16 28 H 0.34 6.63 8.42 -39.29 -0.33 6.30 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.75 6.94 -51.93 -0.36 0.39 16 33 H 0.13 0.91 7.96 -52.48 -0.42 0.49 16 34 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 35 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 36 H 0.13 1.58 7.80 -52.49 -0.41 1.17 16 37 H 0.08 1.03 7.99 -51.93 -0.41 0.62 16 38 H 0.06 0.80 7.27 -51.93 -0.38 0.42 16 LS Contribution 324.13 15.07 4.88 4.88 Total: -1.00 -30.57 324.13 -10.41 -40.99 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -5.60 Total: 2.11 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: -3.64 Total: -21.38 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: 0.11 Total: -41.42 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -1.50 Total: -2.30 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.57 -10.41 -40.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567697647.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.610 kcal (2) G-P(sol) polarization free energy of solvation -30.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds