Wall clock time and date at job start Wed Apr 15 2020 11:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00122 * 2 1 4 4 H 1.48506 * 109.47375 * 270.00154 * 3 2 1 5 5 H 1.48499 * 109.47221 * 29.99879 * 3 2 1 6 6 H 1.48502 * 109.47236 * 149.99970 * 3 2 1 7 7 C 1.37881 * 120.00059 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99563 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99871 * 179.97438 * 7 2 1 10 10 N 1.46905 * 109.46985 * 179.97438 * 9 7 2 11 11 C 1.46900 * 111.00199 * 180.02562 * 10 9 7 12 12 H 1.09003 * 110.53346 * 36.16308 * 11 10 9 13 13 C 1.54890 * 110.48546 * 273.55231 * 11 10 9 14 14 C 1.54887 * 102.91108 * 203.47152 * 13 11 10 15 15 C 1.54265 * 104.20056 * 37.84875 * 14 13 11 16 16 H 1.08997 * 110.03098 * 95.72357 * 15 14 13 17 17 C 1.50704 * 110.03355 * 217.10574 * 15 14 13 18 18 C 1.38258 * 119.99319 * 238.54418 * 17 15 14 19 19 C 1.38219 * 120.02493 * 180.02562 * 18 17 15 20 20 C 1.38234 * 120.01447 * 359.97438 * 19 18 17 21 21 C 1.38323 * 119.98552 * 0.02562 * 20 19 18 22 22 Cl 1.73596 * 120.01252 * 180.02562 * 21 20 19 23 23 C 1.38192 * 119.99087 * 58.26744 * 17 15 14 24 24 C 1.53877 * 106.59605 * 336.39127 * 15 14 13 25 25 H 0.97001 * 119.99901 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46678 * 60.00761 * 9 7 2 27 27 H 1.08993 * 109.47436 * 300.00102 * 9 7 2 28 28 H 1.00894 * 110.99961 * 303.96398 * 10 9 7 29 29 H 1.09002 * 110.75897 * 85.06270 * 13 11 10 30 30 H 1.09006 * 110.75292 * 321.87499 * 13 11 10 31 31 H 1.09004 * 110.48468 * 156.53190 * 14 13 11 32 32 H 1.09006 * 110.48476 * 279.16949 * 14 13 11 33 33 H 1.08004 * 119.98445 * 359.97438 * 18 17 15 34 34 H 1.08004 * 119.98992 * 179.97438 * 19 18 17 35 35 H 1.08003 * 120.00216 * 180.02562 * 20 19 18 36 36 H 1.07997 * 120.00729 * 0.02562 * 23 17 15 37 37 H 1.08999 * 110.03493 * 119.28247 * 24 15 14 38 38 H 1.08997 * 110.03317 * 240.71381 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 7 4.0012 -2.5791 0.0013 11 6 5.4697 -2.6183 0.0014 12 1 5.8739 -1.8041 0.6030 13 6 6.0140 -2.5443 -1.4468 14 6 7.4156 -3.1919 -1.3233 15 6 7.2127 -4.3441 -0.3177 16 1 7.0385 -5.2787 -0.8509 17 6 8.4240 -4.4744 0.5694 18 6 9.1257 -5.6650 0.6106 19 6 10.2364 -5.7854 1.4243 20 6 10.6467 -4.7151 2.1971 21 6 9.9451 -3.5238 2.1563 22 17 10.4601 -2.1791 3.1260 23 6 8.8365 -3.4020 1.3371 24 6 5.9785 -3.9792 0.5257 25 1 -0.4850 0.8401 0.0004 26 1 3.8751 -0.6797 0.8896 27 1 3.8745 -0.6808 -0.8904 28 1 3.6259 -3.0945 0.7833 29 1 6.0948 -1.5086 -1.7768 30 1 5.3826 -3.1166 -2.1265 31 1 7.7426 -3.5804 -2.2878 32 1 8.1362 -2.4710 -0.9371 33 1 8.8052 -6.5015 0.0072 34 1 10.7839 -6.7158 1.4564 35 1 11.5149 -4.8093 2.8326 36 1 8.2907 -2.4707 1.3018 37 1 5.2044 -4.7365 0.4018 38 1 6.2556 -3.8964 1.5766 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567697647.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:36 Heat of formation + Delta-G solvation = -16.909064 kcal Electronic energy + Delta-G solvation = -18888.472457 eV Core-core repulsion = 15947.685475 eV Total energy + Delta-G solvation = -2940.786982 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.90627 -39.00781 -37.42579 -36.06794 -34.33803 -32.20242 -31.66628 -30.04039 -28.84826 -26.87530 -23.83730 -23.32507 -23.17263 -21.13004 -20.67208 -18.92276 -18.11388 -16.88855 -16.68012 -16.39593 -16.28098 -15.68831 -15.49686 -14.90252 -14.60868 -14.57905 -14.31970 -14.21015 -13.78291 -13.50720 -12.98970 -12.73670 -12.63469 -12.42596 -12.31997 -12.09528 -12.04122 -11.87140 -11.81240 -11.63137 -11.54809 -11.45186 -11.32757 -10.82625 -9.80903 -9.59597 -9.15052 -8.32224 -6.36366 0.21764 0.31783 1.16477 1.32464 1.33572 1.44608 2.31550 2.66429 3.01758 3.44498 3.59486 3.68253 3.82207 3.95743 4.12808 4.31332 4.38726 4.44050 4.53359 4.56325 4.62872 4.67072 4.77876 4.81326 4.84685 4.98270 5.03382 5.06877 5.13905 5.21640 5.30148 5.34324 5.38906 5.47936 5.53713 5.64513 5.89419 5.99377 6.55704 6.66519 6.77217 7.28809 8.84504 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.022287 B = 0.003762 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.029487 B = 7441.529862 C = 8212.553683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.009 3.991 3 Si 0.948 3.052 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.255 1.255 7 C -0.528 4.528 8 H 0.039 0.961 9 C 0.177 3.823 10 N -0.679 5.679 11 C 0.072 3.928 12 H 0.029 0.971 13 C -0.113 4.113 14 C -0.106 4.106 15 C -0.043 4.043 16 H 0.103 0.897 17 C -0.062 4.062 18 C -0.114 4.114 19 C -0.102 4.102 20 C -0.123 4.123 21 C -0.047 4.047 22 Cl -0.083 7.083 23 C -0.121 4.121 24 C -0.109 4.109 25 H 0.268 0.732 26 H -0.019 1.019 27 H 0.022 0.978 28 H 0.336 0.664 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.151 0.849 34 H 0.161 0.839 35 H 0.146 0.854 36 H 0.120 0.880 37 H 0.077 0.923 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.983 -11.416 2.142 28.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.188 4.188 3 Si 0.772 3.228 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.179 1.179 7 C -0.566 4.566 8 H 0.057 0.943 9 C 0.048 3.952 10 N -0.309 5.309 11 C -0.038 4.038 12 H 0.047 0.953 13 C -0.151 4.151 14 C -0.144 4.144 15 C -0.061 4.061 16 H 0.121 0.879 17 C -0.063 4.063 18 C -0.132 4.132 19 C -0.120 4.120 20 C -0.142 4.142 21 C -0.073 4.073 22 Cl -0.054 7.054 23 C -0.139 4.139 24 C -0.147 4.147 25 H 0.077 0.923 26 H -0.002 1.002 27 H 0.040 0.960 28 H 0.153 0.847 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.084 0.916 33 H 0.169 0.831 34 H 0.178 0.822 35 H 0.164 0.836 36 H 0.138 0.862 37 H 0.095 0.905 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 25.823 -11.250 1.554 28.210 hybrid contribution -0.245 1.550 1.155 1.948 sum 25.578 -9.701 2.710 27.489 Atomic orbital electron populations 1.70047 1.08074 1.28218 1.52310 1.25854 0.95629 1.03181 0.94177 0.85698 0.79190 0.78630 0.79311 1.18906 1.20440 1.17904 1.21350 0.91377 0.93475 1.50390 0.94271 1.19743 0.93647 0.87484 0.94334 1.60519 1.06702 1.14370 1.49330 1.22550 0.87454 0.96853 0.96904 0.95309 1.22493 0.96312 1.00265 0.96019 1.22422 0.95883 0.96543 0.99517 1.20722 0.90495 1.00532 0.94374 0.87884 1.19929 0.96484 0.93346 0.96495 1.21517 0.95168 0.97339 0.99150 1.21460 0.96542 0.99050 0.94920 1.21307 1.00597 0.91378 1.00897 1.21087 0.98182 0.90295 0.97768 1.98369 1.90452 1.46260 1.70360 1.20950 0.96105 0.99984 0.96909 1.22357 0.97292 0.96042 0.98977 0.92309 1.00156 0.95979 0.84670 0.93006 0.91177 0.89555 0.91599 0.83083 0.82158 0.83630 0.86226 0.90478 0.91913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.85 13.96 21.45 0.30 -59.55 16 2 C 0.01 0.55 5.47 84.66 0.46 1.01 16 3 Si 0.95 45.02 27.47 68.60 1.88 46.91 16 4 H -0.26 -12.01 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.26 -11.48 6.54 99.48 0.65 -10.83 16 7 C -0.53 -31.21 9.87 25.60 0.25 -30.95 16 8 H 0.04 2.55 8.06 -2.91 -0.02 2.53 16 9 C 0.18 8.68 4.36 85.56 0.37 9.05 16 10 N -0.68 -27.96 6.29 -489.67 -3.08 -31.04 16 11 C 0.07 2.33 3.18 46.06 0.15 2.48 16 12 H 0.03 0.99 7.88 -2.39 -0.02 0.97 16 13 C -0.11 -3.23 6.49 31.88 0.21 -3.02 16 14 C -0.11 -2.23 6.27 31.67 0.20 -2.03 16 15 C -0.04 -0.83 3.13 -10.81 -0.03 -0.87 16 16 H 0.10 1.67 7.91 -2.39 -0.02 1.65 16 17 C -0.06 -1.16 4.69 -19.87 -0.09 -1.25 16 18 C -0.11 -1.62 9.68 22.27 0.22 -1.41 16 19 C -0.10 -1.28 10.05 22.26 0.22 -1.06 16 20 C -0.12 -1.92 9.83 22.29 0.22 -1.70 16 21 C -0.05 -0.94 6.32 22.32 0.14 -0.80 16 22 Cl -0.08 -1.72 28.96 -2.72 -0.08 -1.80 16 23 C -0.12 -2.58 7.87 22.29 0.18 -2.40 16 24 C -0.11 -2.72 5.73 31.39 0.18 -2.54 16 25 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 26 H -0.02 -0.94 7.14 -2.39 -0.02 -0.96 16 27 H 0.02 1.09 7.55 -2.39 -0.02 1.07 16 28 H 0.34 13.58 8.42 -89.70 -0.76 12.83 16 29 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 31 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 32 H 0.07 1.40 6.94 -2.38 -0.02 1.38 16 33 H 0.15 1.44 7.96 -2.91 -0.02 1.41 16 34 H 0.16 1.03 8.06 -2.91 -0.02 1.00 16 35 H 0.15 1.73 8.06 -2.91 -0.02 1.70 16 36 H 0.12 2.82 7.80 -2.91 -0.02 2.79 16 37 H 0.08 1.95 7.99 -2.39 -0.02 1.93 16 38 H 0.06 1.56 7.27 -2.39 -0.02 1.55 16 Total: -1.00 -67.22 324.13 1.93 -65.29 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: 0.24 Total: 15.69 kcal Atomic # 6 Polarization: -38.16 SS G_CDS: 2.67 Total: -35.49 kcal Atomic # 7 Polarization: -87.81 SS G_CDS: -2.78 Total: -90.59 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.88 Total: 46.91 kcal Atomic # 17 Polarization: -1.72 SS G_CDS: -0.08 Total: -1.80 kcal Total: -67.22 1.93 -65.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567697647.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.380 kcal (2) G-P(sol) polarization free energy of solvation -67.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds