Wall clock time and date at job start Wed Apr 15 2020 11:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39654 * 120.15182 * 29.83360 * 3 2 1 5 5 C 1.37918 * 119.84178 * 180.24960 * 4 3 2 6 6 C 1.38383 * 120.15593 * 359.74229 * 5 4 3 7 7 C 1.38336 * 120.30603 * 0.02562 * 6 5 4 8 8 C 1.37971 * 120.14892 * 359.97204 * 7 6 5 9 9 C 1.50705 * 120.07783 * 180.02562 * 8 7 6 10 10 N 1.46498 * 109.47245 * 260.00110 * 9 8 7 11 11 C 1.39080 * 119.99873 * 179.97438 * 10 9 8 12 12 C 1.38737 * 119.65902 * 359.73265 * 11 10 9 13 13 C 1.40780 * 118.66962 * 179.75816 * 12 11 10 14 14 C 1.41549 * 120.99420 * 180.26128 * 13 12 11 15 15 H 1.08001 * 120.00036 * 203.53118 * 14 13 12 16 16 C 1.40029 * 120.00178 * 23.52292 * 14 13 12 17 17 N 1.30743 * 119.99736 * 17.00949 * 16 14 13 18 18 Si 1.86805 * 120.00033 * 197.00757 * 16 14 13 19 19 H 1.48498 * 109.46785 * 60.00249 * 18 16 14 20 20 H 1.48496 * 109.46991 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47171 * 300.00196 * 18 16 14 22 22 C 1.41186 * 118.01064 * 0.49647 * 13 12 11 23 23 C 1.36555 * 119.14833 * 359.76321 * 22 13 12 24 24 N 1.32094 * 121.26959 * 359.96769 * 23 22 13 25 25 H 1.08004 * 120.07576 * 359.97360 * 4 3 2 26 26 H 1.08003 * 119.92227 * 179.76768 * 5 4 3 27 27 H 1.08004 * 119.84889 * 180.02562 * 6 5 4 28 28 H 1.08000 * 119.92986 * 179.97438 * 7 6 5 29 29 H 1.08999 * 109.47101 * 139.99897 * 9 8 7 30 30 H 1.09002 * 109.46604 * 20.00118 * 9 8 7 31 31 H 0.96996 * 119.99866 * 0.02562 * 10 9 8 32 32 H 1.08009 * 120.66841 * 0.02562 * 12 11 10 33 33 H 0.97002 * 119.99875 * 179.97438 * 17 16 14 34 34 H 1.07997 * 120.42286 * 179.77829 * 22 13 12 35 35 H 1.08003 * 119.36687 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2700 -1.0466 -0.6008 5 6 4.6491 -1.0421 -0.5925 6 6 5.3373 -0.0005 0.0045 7 6 4.6484 1.0425 0.5972 8 6 3.2687 1.0508 0.5962 9 6 2.5198 2.1881 1.2418 10 7 2.0641 1.7795 2.5728 11 6 1.3459 2.6686 3.3652 12 6 1.0697 3.9426 2.8904 13 6 0.3367 4.8239 3.7077 14 6 0.0227 6.1329 3.2702 15 1 -0.1855 6.9083 3.9925 16 6 -0.0180 6.4225 1.9008 17 7 -0.0991 5.4512 1.0293 18 14 0.0437 8.1966 1.3191 19 1 1.3071 8.8254 1.7814 20 1 -0.0141 8.2334 -0.1643 21 1 -1.1132 8.9413 1.8777 22 6 -0.0713 4.3647 4.9789 23 6 0.2522 3.0948 5.3628 24 7 0.9369 2.2918 4.5683 25 1 2.7340 -1.8603 -1.0668 26 1 5.1933 -1.8532 -1.0534 27 1 6.4174 -0.0018 0.0077 28 1 5.1917 1.8521 1.0617 29 1 1.6585 2.4510 0.6277 30 1 3.1786 3.0517 1.3326 31 1 2.2640 0.8891 2.9017 32 1 1.4065 4.2507 1.9115 33 1 -0.1276 5.6519 0.0807 34 1 -0.6323 5.0095 5.6391 35 1 -0.0586 2.7397 6.3343 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156786548.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:40 Heat of formation + Delta-G solvation = 84.431601 kcal Electronic energy + Delta-G solvation = -20042.104937 eV Core-core repulsion = 17004.604922 eV Total energy + Delta-G solvation = -3037.500015 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.83144 -38.34289 -36.24259 -35.17784 -33.97429 -31.68082 -31.42249 -30.41000 -28.10860 -25.90424 -25.51094 -23.76930 -22.12568 -21.17564 -20.47349 -18.75148 -17.75920 -16.22710 -15.83275 -15.65335 -15.27945 -14.77271 -14.50630 -14.09567 -13.87202 -13.46995 -13.35493 -13.20664 -13.02793 -12.66637 -12.53325 -12.41667 -12.27410 -12.03019 -11.47725 -11.35253 -11.19371 -11.02924 -10.77767 -10.22085 -9.90686 -9.40478 -9.14293 -9.05388 -8.91875 -7.94895 -7.84761 -6.80246 -6.43030 -4.52567 0.65318 1.09243 2.85383 2.86617 2.98519 3.04299 3.06977 3.07403 3.36045 3.74114 3.90174 3.92695 4.28955 4.60260 4.67653 4.74532 4.79587 5.09319 5.25874 5.50308 5.65345 5.76327 5.86734 6.00562 6.06044 6.17035 6.19963 6.39108 6.61953 6.76885 6.83222 6.99186 7.08220 7.29549 7.57695 7.66034 7.88116 7.96630 8.15584 8.44840 8.78447 8.86811 8.91958 9.78032 10.14943 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016773 B = 0.004954 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.919521 B = 5650.125019 C = 6322.448787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C 0.244 3.756 3 C -0.008 4.008 4 C -0.076 4.076 5 C -0.121 4.121 6 C -0.095 4.095 7 C -0.102 4.102 8 C -0.048 4.048 9 C 0.173 3.827 10 N -0.738 5.738 11 C 0.385 3.615 12 C -0.278 4.278 13 C 0.152 3.848 14 C -0.458 4.458 15 H 0.079 0.921 16 C 0.080 3.920 17 N -0.784 5.784 18 Si 0.908 3.092 19 H -0.263 1.263 20 H -0.278 1.278 21 H -0.265 1.265 22 C -0.302 4.302 23 C 0.131 3.869 24 N -0.622 5.622 25 H 0.132 0.868 26 H 0.131 0.869 27 H 0.130 0.870 28 H 0.136 0.864 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.389 0.611 32 H 0.127 0.873 33 H 0.281 0.719 34 H 0.097 0.903 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.716 -8.303 -6.337 15.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.072 5.072 2 C -0.072 4.072 3 C -0.012 4.012 4 C -0.097 4.097 5 C -0.139 4.139 6 C -0.114 4.114 7 C -0.120 4.120 8 C -0.051 4.051 9 C 0.048 3.952 10 N -0.375 5.375 11 C 0.158 3.842 12 C -0.305 4.305 13 C 0.144 3.856 14 C -0.489 4.489 15 H 0.097 0.903 16 C -0.140 4.140 17 N -0.409 5.409 18 Si 0.732 3.268 19 H -0.187 1.187 20 H -0.203 1.203 21 H -0.189 1.189 22 C -0.327 4.327 23 C -0.021 4.021 24 N -0.345 5.345 25 H 0.150 0.850 26 H 0.149 0.851 27 H 0.148 0.852 28 H 0.154 0.846 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.222 0.778 32 H 0.144 0.856 33 H 0.092 0.908 34 H 0.115 0.885 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 10.125 -9.064 -6.454 15.044 hybrid contribution 0.188 1.342 -0.517 1.450 sum 10.312 -7.722 -6.971 14.648 Atomic orbital electron populations 1.81266 1.11979 1.06633 1.07295 1.25554 0.92634 0.94529 0.94513 1.15974 0.84629 0.97248 1.03364 1.21162 0.94433 0.96739 0.97350 1.21084 0.93552 0.99068 1.00192 1.21386 1.00409 0.93482 0.96109 1.21115 0.92757 0.99163 0.98975 1.20187 0.94027 0.94680 0.96187 1.20066 0.97609 0.93153 0.84356 1.43927 1.62721 1.15747 1.15073 1.18062 0.90144 0.87896 0.88119 1.21490 1.11021 0.93765 1.04201 1.17576 0.85833 0.92436 0.89771 1.19556 1.41919 0.95596 0.91791 0.90253 1.25942 0.91946 0.99275 0.96799 1.69816 1.33832 1.33946 1.03290 0.86373 0.80086 0.82502 0.77811 1.18724 1.20295 1.18926 1.21482 1.12510 0.97923 1.00771 1.21213 0.94016 0.90590 0.96323 1.66710 1.23318 1.38628 1.05831 0.85032 0.85083 0.85222 0.84636 0.91149 0.91163 0.77766 0.85579 0.90847 0.88466 0.86428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -7.63 18.54 41.84 0.78 -6.85 16 2 C 0.24 3.95 14.00 -22.47 -0.31 3.63 16 3 C -0.01 -0.11 5.73 -106.93 -0.61 -0.72 16 4 C -0.08 -0.71 9.76 -39.17 -0.38 -1.10 16 5 C -0.12 -0.90 10.03 -39.65 -0.40 -1.30 16 6 C -0.10 -0.74 10.04 -39.49 -0.40 -1.14 16 7 C -0.10 -1.03 9.66 -39.64 -0.38 -1.41 16 8 C -0.05 -0.62 5.28 -104.20 -0.55 -1.17 16 9 C 0.17 2.95 4.44 -5.19 -0.02 2.93 16 10 N -0.74 -14.71 5.72 -61.65 -0.35 -15.07 16 11 C 0.39 9.49 7.65 -154.98 -1.19 8.31 16 12 C -0.28 -7.36 8.02 -38.44 -0.31 -7.67 16 13 C 0.15 4.17 5.61 -106.56 -0.60 3.57 16 14 C -0.46 -12.24 9.12 -37.65 -0.34 -12.59 16 15 H 0.08 2.03 7.90 -52.49 -0.41 1.61 16 16 C 0.08 2.00 5.20 -17.34 -0.09 1.91 16 17 N -0.78 -20.28 10.91 55.55 0.61 -19.68 16 18 Si 0.91 18.52 29.59 -169.99 -5.03 13.49 16 19 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 20 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 21 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 22 C -0.30 -7.68 9.85 -39.07 -0.38 -8.07 16 23 C 0.13 3.17 11.10 -18.05 -0.20 2.97 16 24 N -0.62 -15.61 10.37 -12.82 -0.13 -15.74 16 25 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 26 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 27 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 28 H 0.14 1.22 8.03 -52.49 -0.42 0.80 16 29 H 0.07 1.39 7.29 -51.93 -0.38 1.01 16 30 H 0.07 1.17 7.78 -51.93 -0.40 0.77 16 31 H 0.39 7.27 8.59 -40.82 -0.35 6.92 16 32 H 0.13 3.33 4.84 -52.48 -0.25 3.08 16 33 H 0.28 6.63 8.29 -40.82 -0.34 6.29 16 34 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 35 H 0.12 2.44 8.06 -52.48 -0.42 2.01 16 LS Contribution 314.94 15.07 4.75 4.75 Total: -1.00 -31.47 314.94 -9.03 -40.50 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -3.47 Total: 10.43 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -6.17 Total: -11.84 kcal Atomic # 7 Polarization: -58.23 SS G_CDS: 0.90 Total: -57.34 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.49 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.47 -9.03 -40.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156786548.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.936 kcal (2) G-P(sol) polarization free energy of solvation -31.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds