Wall clock time and date at job start Wed Apr 15 2020 11:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39654 * 120.15182 * 29.83360 * 3 2 1 5 5 C 1.37918 * 119.84178 * 180.24960 * 4 3 2 6 6 C 1.38383 * 120.15593 * 359.74229 * 5 4 3 7 7 C 1.38336 * 120.30603 * 0.02562 * 6 5 4 8 8 C 1.37971 * 120.14892 * 359.97204 * 7 6 5 9 9 C 1.50705 * 120.07783 * 180.02562 * 8 7 6 10 10 N 1.46498 * 109.47245 * 260.00110 * 9 8 7 11 11 C 1.39080 * 119.99873 * 179.97438 * 10 9 8 12 12 C 1.38737 * 119.65902 * 359.73265 * 11 10 9 13 13 C 1.40780 * 118.66962 * 179.75816 * 12 11 10 14 14 C 1.41549 * 120.99420 * 180.26128 * 13 12 11 15 15 H 1.08001 * 120.00036 * 203.53118 * 14 13 12 16 16 C 1.40029 * 120.00178 * 23.52292 * 14 13 12 17 17 N 1.30743 * 119.99736 * 17.00949 * 16 14 13 18 18 Si 1.86805 * 120.00033 * 197.00757 * 16 14 13 19 19 H 1.48498 * 109.46785 * 60.00249 * 18 16 14 20 20 H 1.48496 * 109.46991 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47171 * 300.00196 * 18 16 14 22 22 C 1.41186 * 118.01064 * 0.49647 * 13 12 11 23 23 C 1.36555 * 119.14833 * 359.76321 * 22 13 12 24 24 N 1.32094 * 121.26959 * 359.96769 * 23 22 13 25 25 H 1.08004 * 120.07576 * 359.97360 * 4 3 2 26 26 H 1.08003 * 119.92227 * 179.76768 * 5 4 3 27 27 H 1.08004 * 119.84889 * 180.02562 * 6 5 4 28 28 H 1.08000 * 119.92986 * 179.97438 * 7 6 5 29 29 H 1.08999 * 109.47101 * 139.99897 * 9 8 7 30 30 H 1.09002 * 109.46604 * 20.00118 * 9 8 7 31 31 H 0.96996 * 119.99866 * 0.02562 * 10 9 8 32 32 H 1.08009 * 120.66841 * 0.02562 * 12 11 10 33 33 H 0.97002 * 119.99875 * 179.97438 * 17 16 14 34 34 H 1.07997 * 120.42286 * 179.77829 * 22 13 12 35 35 H 1.08003 * 119.36687 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2700 -1.0466 -0.6008 5 6 4.6491 -1.0421 -0.5925 6 6 5.3373 -0.0005 0.0045 7 6 4.6484 1.0425 0.5972 8 6 3.2687 1.0508 0.5962 9 6 2.5198 2.1881 1.2418 10 7 2.0641 1.7795 2.5728 11 6 1.3459 2.6686 3.3652 12 6 1.0697 3.9426 2.8904 13 6 0.3367 4.8239 3.7077 14 6 0.0227 6.1329 3.2702 15 1 -0.1855 6.9083 3.9925 16 6 -0.0180 6.4225 1.9008 17 7 -0.0991 5.4512 1.0293 18 14 0.0437 8.1966 1.3191 19 1 1.3071 8.8254 1.7814 20 1 -0.0141 8.2334 -0.1643 21 1 -1.1132 8.9413 1.8777 22 6 -0.0713 4.3647 4.9789 23 6 0.2522 3.0948 5.3628 24 7 0.9369 2.2918 4.5683 25 1 2.7340 -1.8603 -1.0668 26 1 5.1933 -1.8532 -1.0534 27 1 6.4174 -0.0018 0.0077 28 1 5.1917 1.8521 1.0617 29 1 1.6585 2.4510 0.6277 30 1 3.1786 3.0517 1.3326 31 1 2.2640 0.8891 2.9017 32 1 1.4065 4.2507 1.9115 33 1 -0.1276 5.6519 0.0807 34 1 -0.6323 5.0095 5.6391 35 1 -0.0586 2.7397 6.3343 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156786548.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:39 Heat of formation + Delta-G solvation = 65.977484 kcal Electronic energy + Delta-G solvation = -20042.905168 eV Core-core repulsion = 17004.604922 eV Total energy + Delta-G solvation = -3038.300245 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.84010 -40.13453 -37.51021 -36.74414 -35.87066 -32.97289 -32.30659 -32.23142 -29.78310 -27.87204 -26.89675 -24.66532 -23.65411 -22.66627 -22.20148 -19.81237 -19.52538 -17.56410 -17.52426 -16.81519 -16.57842 -16.35169 -15.95271 -15.43270 -15.34450 -14.97336 -14.87342 -14.74222 -14.33339 -14.16634 -13.89802 -13.79047 -13.64518 -13.24983 -13.15296 -12.88006 -12.62621 -12.29580 -11.98869 -11.97326 -11.86488 -11.27075 -10.76011 -9.94431 -9.92693 -9.87830 -9.84781 -8.70863 -8.27348 -6.56285 -0.23740 0.32231 1.03185 1.10513 1.36437 1.48905 1.59041 1.61666 1.96346 2.17642 2.48407 2.79691 2.86772 3.01967 3.56782 3.76823 3.85796 4.15737 4.22846 4.35519 4.46259 4.59446 4.61989 4.78323 4.85527 4.93879 5.02274 5.05823 5.16325 5.29739 5.36402 5.46285 5.50824 5.60382 5.91322 5.95199 6.05079 6.28151 6.43682 6.55755 6.86740 6.88372 7.01206 7.83996 8.25998 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016773 B = 0.004954 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.919521 B = 5650.125019 C = 6322.448787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C 0.266 3.734 3 C -0.036 4.036 4 C -0.067 4.067 5 C -0.104 4.104 6 C -0.077 4.077 7 C -0.103 4.103 8 C -0.063 4.063 9 C 0.179 3.821 10 N -0.726 5.726 11 C 0.382 3.618 12 C -0.304 4.304 13 C 0.121 3.879 14 C -0.490 4.490 15 H 0.082 0.918 16 C 0.039 3.961 17 N -0.814 5.814 18 Si 0.986 3.014 19 H -0.255 1.255 20 H -0.267 1.267 21 H -0.259 1.259 22 C -0.323 4.323 23 C 0.131 3.869 24 N -0.634 5.634 25 H 0.151 0.849 26 H 0.173 0.827 27 H 0.168 0.832 28 H 0.145 0.855 29 H 0.034 0.966 30 H 0.069 0.931 31 H 0.396 0.604 32 H 0.117 0.883 33 H 0.288 0.712 34 H 0.109 0.891 35 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.559 -9.149 -7.365 18.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.145 5.145 2 C -0.048 4.048 3 C -0.040 4.040 4 C -0.088 4.088 5 C -0.122 4.122 6 C -0.095 4.095 7 C -0.122 4.122 8 C -0.066 4.066 9 C 0.055 3.945 10 N -0.362 5.362 11 C 0.152 3.848 12 C -0.331 4.331 13 C 0.113 3.887 14 C -0.521 4.521 15 H 0.100 0.900 16 C -0.178 4.178 17 N -0.439 5.439 18 Si 0.806 3.194 19 H -0.179 1.179 20 H -0.191 1.191 21 H -0.183 1.183 22 C -0.348 4.348 23 C -0.021 4.021 24 N -0.358 5.358 25 H 0.169 0.831 26 H 0.191 0.809 27 H 0.186 0.814 28 H 0.163 0.837 29 H 0.052 0.948 30 H 0.087 0.913 31 H 0.230 0.770 32 H 0.135 0.865 33 H 0.099 0.901 34 H 0.127 0.873 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 12.984 -9.944 -7.490 17.988 hybrid contribution -0.574 1.483 -0.223 1.605 sum 12.411 -8.461 -7.713 16.885 Atomic orbital electron populations 1.81257 1.14068 1.09067 1.10088 1.26283 0.93474 0.92524 0.92527 1.16150 0.82673 0.99106 1.06033 1.21459 0.95532 0.95741 0.96019 1.21584 0.92541 0.99615 0.98420 1.21837 1.02252 0.91841 0.93568 1.21276 0.91247 1.00465 0.99186 1.19832 0.95055 0.93811 0.97927 1.19990 0.96578 0.95362 0.82592 1.44026 1.61358 1.15247 1.15541 1.18345 0.89842 0.88198 0.88411 1.21482 1.12513 0.94890 1.04169 1.18044 0.86422 0.93309 0.90974 1.19873 1.43364 0.95743 0.93096 0.89982 1.26876 0.90654 1.04062 0.96199 1.69891 1.33728 1.36410 1.03905 0.85197 0.80351 0.76186 0.77651 1.17937 1.19131 1.18269 1.21686 1.13537 0.98941 1.00672 1.21776 0.92826 0.90094 0.97448 1.66882 1.24005 1.38797 1.06103 0.83098 0.80947 0.81415 0.83749 0.94803 0.91255 0.76975 0.86481 0.90133 0.87280 0.82840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -19.17 18.54 19.01 0.35 -18.81 16 2 C 0.27 9.01 14.00 88.33 1.24 10.24 16 3 C -0.04 -0.89 5.73 -21.36 -0.12 -1.01 16 4 C -0.07 -1.05 9.76 22.54 0.22 -0.83 16 5 C -0.10 -1.00 10.03 22.23 0.22 -0.78 16 6 C -0.08 -0.81 10.04 22.33 0.22 -0.59 16 7 C -0.10 -1.82 9.66 22.23 0.21 -1.60 16 8 C -0.06 -1.61 5.28 -19.59 -0.10 -1.72 16 9 C 0.18 6.41 4.44 85.64 0.38 6.79 16 10 N -0.73 -29.99 5.72 -348.97 -2.00 -31.99 16 11 C 0.38 19.49 7.65 132.90 1.02 20.50 16 12 C -0.30 -16.88 8.02 23.01 0.18 -16.69 16 13 C 0.12 6.89 5.61 -21.12 -0.12 6.77 16 14 C -0.49 -27.13 9.12 23.52 0.21 -26.92 16 15 H 0.08 4.32 7.90 -2.91 -0.02 4.30 16 16 C 0.04 1.99 5.20 85.29 0.44 2.44 16 17 N -0.81 -43.73 10.91 21.84 0.24 -43.49 16 18 Si 0.99 38.24 29.59 68.60 2.03 40.27 16 19 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 20 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 21 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 22 C -0.32 -16.90 9.85 22.60 0.22 -16.68 16 23 C 0.13 6.38 11.10 84.26 0.94 7.31 16 24 N -0.63 -32.35 10.37 -194.47 -2.02 -34.37 16 25 H 0.15 1.76 8.06 -2.91 -0.02 1.73 16 26 H 0.17 0.39 8.06 -2.91 -0.02 0.37 16 27 H 0.17 0.62 8.06 -2.91 -0.02 0.60 16 28 H 0.14 2.26 8.03 -2.91 -0.02 2.24 16 29 H 0.03 1.45 7.29 -2.39 -0.02 1.43 16 30 H 0.07 2.44 7.78 -2.39 -0.02 2.42 16 31 H 0.40 15.08 8.59 -92.71 -0.80 14.28 16 32 H 0.12 6.59 4.84 -2.91 -0.01 6.57 16 33 H 0.29 14.04 8.29 -92.71 -0.77 13.27 16 34 H 0.11 5.26 8.06 -2.91 -0.02 5.23 16 35 H 0.15 6.20 8.06 -2.91 -0.02 6.17 16 Total: -1.00 -73.55 314.94 4.12 -69.43 By element: Atomic # 1 Polarization: 31.37 SS G_CDS: 0.34 Total: 31.71 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: 5.17 Total: -12.76 kcal Atomic # 7 Polarization: -125.24 SS G_CDS: -3.42 Total: -128.66 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 2.03 Total: 40.27 kcal Total: -73.55 4.12 -69.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156786548.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.411 kcal (2) G-P(sol) polarization free energy of solvation -73.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds