Wall clock time and date at job start Wed Apr 15 2020 11:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39658 * 120.15529 * 308.98539 * 3 2 1 5 5 C 1.37923 * 119.84422 * 180.02562 * 4 3 2 6 6 C 1.38379 * 120.15537 * 359.97438 * 5 4 3 7 7 C 1.38339 * 120.30591 * 0.02562 * 6 5 4 8 8 C 1.37964 * 120.15287 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.08215 * 180.02562 * 8 7 6 10 10 N 1.46492 * 109.47091 * 259.96294 * 9 8 7 11 11 C 1.38374 * 120.00087 * 179.97438 * 10 9 8 12 12 C 1.39715 * 119.42497 * 359.71993 * 11 10 9 13 13 C 1.36564 * 119.48656 * 179.76606 * 12 11 10 14 14 C 1.41323 * 118.41176 * 0.49942 * 13 12 11 15 15 C 1.41206 * 120.57136 * 179.76616 * 14 13 12 16 16 H 1.08001 * 119.99902 * 203.61476 * 15 14 13 17 17 C 1.39871 * 119.99734 * 23.61290 * 15 14 13 18 18 N 1.30899 * 120.00054 * 17.65849 * 17 15 14 19 19 Si 1.86802 * 119.99806 * 197.64708 * 17 15 14 20 20 H 1.48499 * 109.47161 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46722 * 120.00445 * 19 17 15 22 22 H 1.48496 * 109.47504 * 240.00410 * 19 17 15 23 23 C 1.40755 * 118.85688 * 359.74988 * 14 13 12 24 24 N 1.31486 * 120.36878 * 359.97438 * 23 14 13 25 25 H 1.08002 * 120.07330 * 0.02562 * 4 3 2 26 26 H 1.08007 * 119.91907 * 180.02562 * 5 4 3 27 27 H 1.08002 * 119.84582 * 179.74554 * 6 5 4 28 28 H 1.08002 * 119.92300 * 179.97438 * 7 6 5 29 29 H 1.09006 * 109.46322 * 19.95655 * 9 8 7 30 30 H 1.08998 * 109.47265 * 139.95334 * 9 8 7 31 31 H 0.96997 * 120.00110 * 359.97438 * 10 9 8 32 32 H 1.07998 * 120.25591 * 0.02562 * 12 11 10 33 33 H 1.08007 * 120.79290 * 180.22512 * 13 12 11 34 34 H 0.96997 * 119.99641 * 179.97438 * 18 17 15 35 35 H 1.07998 * 119.81141 * 179.97438 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2699 -0.7588 0.9387 5 6 4.6491 -0.7530 0.9332 6 6 5.3374 0.0024 0.0002 7 6 4.6485 0.7570 -0.9325 8 6 3.2689 0.7613 -0.9378 9 6 2.5201 1.5835 -1.9549 10 7 2.0686 2.8324 -1.3365 11 6 1.3548 3.7546 -2.0813 12 6 1.0764 3.4851 -3.4236 13 6 0.3680 4.3923 -4.1585 14 6 -0.0518 5.5862 -3.5296 15 6 -0.7827 6.5577 -4.2478 16 1 -0.7755 7.5878 -3.9234 17 6 -1.5158 6.1859 -5.3795 18 7 -1.8148 4.9276 -5.5813 19 14 -2.0684 7.4851 -6.6027 20 1 -1.6061 8.8212 -6.1484 21 1 -1.4875 7.1879 -7.9366 22 1 -3.5504 7.4790 -6.6957 23 6 0.2709 5.7900 -2.1747 24 7 0.9509 4.8823 -1.5095 25 1 2.7339 -1.3491 1.6671 26 1 5.1931 -1.3402 1.6583 27 1 6.4174 0.0065 0.0030 28 1 5.1920 1.3446 -1.6576 29 1 3.1779 1.8105 -2.7939 30 1 1.6568 1.0217 -2.3117 31 1 2.2700 3.0128 -0.4050 32 1 1.4153 2.5646 -3.8754 33 1 0.1378 4.2038 -5.1968 34 1 -2.3236 4.6699 -6.3659 35 1 -0.0419 6.6971 -1.6789 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167632172.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:41 Heat of formation + Delta-G solvation = 87.566167 kcal Electronic energy + Delta-G solvation = -19611.362259 eV Core-core repulsion = 16573.998169 eV Total energy + Delta-G solvation = -3037.364090 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.93447 -38.44472 -36.36174 -35.38607 -33.71133 -31.61015 -31.50831 -30.56480 -28.93746 -26.31117 -24.38567 -23.80451 -22.30139 -21.44610 -20.59613 -18.83966 -17.25707 -16.77693 -15.97720 -15.94017 -15.41139 -14.99272 -14.60505 -14.10650 -13.77336 -13.57837 -13.45452 -13.25175 -13.11551 -12.77972 -12.48517 -12.37709 -12.18772 -11.80347 -11.55416 -11.53740 -11.19486 -11.18851 -11.03868 -10.54124 -9.78210 -9.42861 -9.23288 -9.11706 -8.74543 -8.22843 -8.00066 -6.84358 -6.60958 -4.17651 0.55468 1.00094 2.74192 2.76122 2.88237 2.99688 3.10375 3.15838 3.29909 3.64479 3.81742 3.97229 4.25448 4.50036 4.57819 4.70594 4.72297 5.00050 5.15741 5.40037 5.52080 5.65794 5.78455 5.81195 5.97338 6.10462 6.11529 6.25549 6.48245 6.52201 6.63226 6.87992 7.18892 7.33978 7.41477 7.53849 7.74463 7.93131 8.24707 8.43172 8.65397 8.85969 8.92265 9.72866 10.24591 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.034474 B = 0.003410 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.018320 B = 8209.092170 C = 8411.353429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C 0.245 3.755 3 C -0.009 4.009 4 C -0.076 4.076 5 C -0.120 4.120 6 C -0.094 4.094 7 C -0.101 4.101 8 C -0.048 4.048 9 C 0.176 3.824 10 N -0.740 5.740 11 C 0.278 3.722 12 C -0.202 4.202 13 C -0.094 4.094 14 C 0.031 3.969 15 C -0.456 4.456 16 H 0.078 0.922 17 C 0.073 3.927 18 N -0.804 5.804 19 Si 0.908 3.092 20 H -0.261 1.261 21 H -0.273 1.273 22 H -0.276 1.276 23 C 0.011 3.989 24 N -0.520 5.520 25 H 0.132 0.868 26 H 0.132 0.868 27 H 0.130 0.870 28 H 0.136 0.864 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.390 0.610 32 H 0.096 0.904 33 H 0.128 0.872 34 H 0.278 0.722 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.686 -11.057 6.805 18.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.074 5.074 2 C -0.071 4.071 3 C -0.013 4.013 4 C -0.096 4.096 5 C -0.138 4.138 6 C -0.113 4.113 7 C -0.120 4.120 8 C -0.051 4.051 9 C 0.050 3.950 10 N -0.380 5.380 11 C 0.046 3.954 12 C -0.226 4.226 13 C -0.121 4.121 14 C 0.026 3.974 15 C -0.487 4.487 16 H 0.097 0.903 17 C -0.143 4.143 18 N -0.431 5.431 19 Si 0.732 3.268 20 H -0.184 1.184 21 H -0.199 1.199 22 H -0.201 1.201 23 C -0.147 4.147 24 N -0.235 5.235 25 H 0.150 0.850 26 H 0.150 0.850 27 H 0.148 0.852 28 H 0.154 0.846 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.223 0.777 32 H 0.114 0.886 33 H 0.145 0.855 34 H 0.089 0.911 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 11.961 -11.147 7.335 17.920 hybrid contribution -0.112 0.371 -1.195 1.256 sum 11.849 -10.776 6.139 17.153 Atomic orbital electron populations 1.81284 1.11981 1.07328 1.06799 1.25574 0.92643 0.94358 0.94536 1.15965 0.84577 1.01635 0.99146 1.21176 0.94450 0.97159 0.96816 1.21103 0.93555 0.99826 0.99314 1.21399 1.00476 0.95238 0.94195 1.21102 0.92713 0.98878 0.99281 1.20121 0.94021 0.95663 0.95344 1.19989 0.96979 0.84938 0.93098 1.43472 1.63831 1.17790 1.12871 1.17671 0.99122 0.89781 0.88864 1.20800 1.06724 1.01071 0.94026 1.21301 0.96310 0.94544 0.99938 1.18368 0.93357 0.93728 0.91997 1.19361 1.25151 0.95826 1.08406 0.90349 1.25866 0.94340 0.95954 0.98136 1.69835 1.29672 1.17623 1.25955 0.86274 0.78587 0.81744 0.80169 1.18439 1.19860 1.20134 1.22182 1.03210 0.97783 0.91512 1.66490 1.15056 1.02168 1.39791 0.84984 0.85018 0.85164 0.84613 0.91433 0.92331 0.77665 0.88597 0.85466 0.91073 0.85554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -7.08 18.54 41.84 0.78 -6.31 16 2 C 0.24 3.60 13.99 -22.47 -0.31 3.28 16 3 C -0.01 -0.11 5.73 -106.93 -0.61 -0.72 16 4 C -0.08 -0.62 9.76 -39.17 -0.38 -1.01 16 5 C -0.12 -0.78 10.03 -39.64 -0.40 -1.17 16 6 C -0.09 -0.63 10.04 -39.49 -0.40 -1.03 16 7 C -0.10 -0.88 9.66 -39.64 -0.38 -1.26 16 8 C -0.05 -0.55 5.28 -104.21 -0.55 -1.10 16 9 C 0.18 2.56 4.42 -5.20 -0.02 2.53 16 10 N -0.74 -13.58 5.70 -61.54 -0.35 -13.93 16 11 C 0.28 6.44 7.64 -155.13 -1.19 5.25 16 12 C -0.20 -4.79 9.24 -39.63 -0.37 -5.16 16 13 C -0.09 -2.47 8.74 -39.01 -0.34 -2.81 16 14 C 0.03 0.83 5.59 -106.65 -0.60 0.23 16 15 C -0.46 -12.19 9.07 -37.84 -0.34 -12.53 16 16 H 0.08 2.00 7.90 -52.49 -0.41 1.59 16 17 C 0.07 1.86 5.17 -17.34 -0.09 1.77 16 18 N -0.80 -21.10 10.92 55.54 0.61 -20.50 16 19 Si 0.91 18.88 29.59 -169.99 -5.03 13.85 16 20 H -0.26 -5.36 7.11 56.52 0.40 -4.95 16 21 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 22 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 23 C 0.01 0.29 10.97 -16.75 -0.18 0.11 16 24 N -0.52 -13.06 10.37 -11.79 -0.12 -13.18 16 25 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 26 H 0.13 0.51 8.06 -52.48 -0.42 0.09 16 27 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 28 H 0.14 1.02 8.03 -52.49 -0.42 0.60 16 29 H 0.07 0.91 7.75 -51.93 -0.40 0.51 16 30 H 0.06 0.94 7.25 -51.93 -0.38 0.57 16 31 H 0.39 6.89 8.58 -40.82 -0.35 6.54 16 32 H 0.10 2.01 6.64 -52.49 -0.35 1.66 16 33 H 0.13 3.40 6.19 -52.48 -0.32 3.07 16 34 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 35 H 0.13 3.04 8.06 -52.49 -0.42 2.62 16 LS Contribution 314.67 15.07 4.74 4.74 Total: -1.00 -31.21 314.67 -9.01 -40.22 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -3.46 Total: 8.72 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: -6.17 Total: -13.61 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: 0.91 Total: -53.92 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.21 -9.01 -40.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167632172.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.785 kcal (2) G-P(sol) polarization free energy of solvation -31.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds