Wall clock time and date at job start Wed Apr 15 2020 11:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39658 * 120.15529 * 308.98539 * 3 2 1 5 5 C 1.37923 * 119.84422 * 180.02562 * 4 3 2 6 6 C 1.38379 * 120.15537 * 359.97438 * 5 4 3 7 7 C 1.38339 * 120.30591 * 0.02562 * 6 5 4 8 8 C 1.37964 * 120.15287 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.08215 * 180.02562 * 8 7 6 10 10 N 1.46492 * 109.47091 * 259.96294 * 9 8 7 11 11 C 1.38374 * 120.00087 * 179.97438 * 10 9 8 12 12 C 1.39715 * 119.42497 * 359.71993 * 11 10 9 13 13 C 1.36564 * 119.48656 * 179.76606 * 12 11 10 14 14 C 1.41323 * 118.41176 * 0.49942 * 13 12 11 15 15 C 1.41206 * 120.57136 * 179.76616 * 14 13 12 16 16 H 1.08001 * 119.99902 * 203.61476 * 15 14 13 17 17 C 1.39871 * 119.99734 * 23.61290 * 15 14 13 18 18 N 1.30899 * 120.00054 * 17.65849 * 17 15 14 19 19 Si 1.86802 * 119.99806 * 197.64708 * 17 15 14 20 20 H 1.48499 * 109.47161 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46722 * 120.00445 * 19 17 15 22 22 H 1.48496 * 109.47504 * 240.00410 * 19 17 15 23 23 C 1.40755 * 118.85688 * 359.74988 * 14 13 12 24 24 N 1.31486 * 120.36878 * 359.97438 * 23 14 13 25 25 H 1.08002 * 120.07330 * 0.02562 * 4 3 2 26 26 H 1.08007 * 119.91907 * 180.02562 * 5 4 3 27 27 H 1.08002 * 119.84582 * 179.74554 * 6 5 4 28 28 H 1.08002 * 119.92300 * 179.97438 * 7 6 5 29 29 H 1.09006 * 109.46322 * 19.95655 * 9 8 7 30 30 H 1.08998 * 109.47265 * 139.95334 * 9 8 7 31 31 H 0.96997 * 120.00110 * 359.97438 * 10 9 8 32 32 H 1.07998 * 120.25591 * 0.02562 * 12 11 10 33 33 H 1.08007 * 120.79290 * 180.22512 * 13 12 11 34 34 H 0.96997 * 119.99641 * 179.97438 * 18 17 15 35 35 H 1.07998 * 119.81141 * 179.97438 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2699 -0.7588 0.9387 5 6 4.6491 -0.7530 0.9332 6 6 5.3374 0.0024 0.0002 7 6 4.6485 0.7570 -0.9325 8 6 3.2689 0.7613 -0.9378 9 6 2.5201 1.5835 -1.9549 10 7 2.0686 2.8324 -1.3365 11 6 1.3548 3.7546 -2.0813 12 6 1.0764 3.4851 -3.4236 13 6 0.3680 4.3923 -4.1585 14 6 -0.0518 5.5862 -3.5296 15 6 -0.7827 6.5577 -4.2478 16 1 -0.7755 7.5878 -3.9234 17 6 -1.5158 6.1859 -5.3795 18 7 -1.8148 4.9276 -5.5813 19 14 -2.0684 7.4851 -6.6027 20 1 -1.6061 8.8212 -6.1484 21 1 -1.4875 7.1879 -7.9366 22 1 -3.5504 7.4790 -6.6957 23 6 0.2709 5.7900 -2.1747 24 7 0.9509 4.8823 -1.5095 25 1 2.7339 -1.3491 1.6671 26 1 5.1931 -1.3402 1.6583 27 1 6.4174 0.0065 0.0030 28 1 5.1920 1.3446 -1.6576 29 1 3.1779 1.8105 -2.7939 30 1 1.6568 1.0217 -2.3117 31 1 2.2700 3.0128 -0.4050 32 1 1.4153 2.5646 -3.8754 33 1 0.1378 4.2038 -5.1968 34 1 -2.3236 4.6699 -6.3659 35 1 -0.0419 6.6971 -1.6789 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167632172.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:41 Heat of formation + Delta-G solvation = 69.614908 kcal Electronic energy + Delta-G solvation = -19612.140684 eV Core-core repulsion = 16573.998169 eV Total energy + Delta-G solvation = -3038.142515 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.84596 -40.19733 -37.50371 -36.91988 -35.47662 -32.80997 -32.48492 -32.23919 -30.66978 -27.68502 -26.01650 -24.63331 -23.91418 -22.83861 -22.19945 -19.68265 -19.22485 -18.32772 -17.31527 -16.92057 -16.78413 -16.45719 -15.58534 -15.39404 -15.35612 -14.99653 -14.86167 -14.70085 -14.14957 -13.90640 -13.80812 -13.76773 -13.58739 -13.49362 -13.19606 -13.00444 -12.80398 -12.29432 -12.24177 -11.96690 -11.67084 -11.26598 -10.52564 -10.20929 -9.97203 -9.90520 -9.85856 -8.71965 -8.46252 -6.16511 -0.21859 0.34653 0.85004 1.08385 1.40033 1.53169 1.56161 1.62189 1.97718 2.23121 2.55854 2.78593 2.87341 3.06269 3.58866 3.74626 3.86517 4.15979 4.18070 4.37296 4.46605 4.56656 4.60732 4.65232 4.73415 4.80321 4.92584 5.05011 5.25049 5.36825 5.38258 5.47520 5.52203 5.53450 5.82567 5.92941 5.95008 6.43397 6.44529 6.56124 6.78636 6.89248 7.06656 7.79599 8.36731 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.034474 B = 0.003410 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.018320 B = 8209.092170 C = 8411.353429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C 0.268 3.732 3 C -0.036 4.036 4 C -0.069 4.069 5 C -0.106 4.106 6 C -0.079 4.079 7 C -0.102 4.102 8 C -0.061 4.061 9 C 0.173 3.827 10 N -0.729 5.729 11 C 0.284 3.716 12 C -0.207 4.207 13 C -0.109 4.109 14 C 0.000 4.000 15 C -0.490 4.490 16 H 0.079 0.921 17 C 0.032 3.968 18 N -0.838 5.838 19 Si 0.985 3.015 20 H -0.257 1.257 21 H -0.264 1.264 22 H -0.270 1.270 23 C -0.003 4.003 24 N -0.536 5.536 25 H 0.148 0.852 26 H 0.169 0.831 27 H 0.166 0.834 28 H 0.148 0.852 29 H 0.082 0.918 30 H 0.038 0.962 31 H 0.394 0.606 32 H 0.121 0.879 33 H 0.117 0.883 34 H 0.286 0.714 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.505 -12.126 7.364 21.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.147 5.147 2 C -0.046 4.046 3 C -0.040 4.040 4 C -0.090 4.090 5 C -0.124 4.124 6 C -0.097 4.097 7 C -0.120 4.120 8 C -0.065 4.065 9 C 0.049 3.951 10 N -0.368 5.368 11 C 0.050 3.950 12 C -0.231 4.231 13 C -0.136 4.136 14 C -0.005 4.005 15 C -0.521 4.521 16 H 0.097 0.903 17 C -0.181 4.181 18 N -0.465 5.465 19 Si 0.806 3.194 20 H -0.180 1.180 21 H -0.189 1.189 22 H -0.195 1.195 23 C -0.160 4.160 24 N -0.252 5.252 25 H 0.166 0.834 26 H 0.187 0.813 27 H 0.183 0.817 28 H 0.166 0.834 29 H 0.100 0.900 30 H 0.057 0.943 31 H 0.228 0.772 32 H 0.139 0.861 33 H 0.135 0.865 34 H 0.097 0.903 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 14.807 -12.247 7.921 20.784 hybrid contribution -0.782 0.523 -1.233 1.550 sum 14.025 -11.724 6.688 19.465 Atomic orbital electron populations 1.81287 1.14059 1.09992 1.09333 1.26264 0.93410 0.92374 0.92533 1.16141 0.82665 1.04006 1.01188 1.21444 0.95492 0.96153 0.95896 1.21561 0.92629 0.98936 0.99281 1.21836 1.02216 0.93181 0.92496 1.21293 0.91370 0.99237 1.00101 1.19825 0.94951 0.96375 0.95303 1.20120 0.96837 0.83454 0.94710 1.43634 1.62393 1.17978 1.12835 1.18039 0.97977 0.89761 0.89203 1.21023 1.06227 1.01525 0.94338 1.21330 0.97226 0.95199 0.99805 1.18662 0.94505 0.94588 0.92753 1.19604 1.26535 0.95879 1.10067 0.90299 1.26744 0.93828 0.98201 0.99361 1.69888 1.30286 1.19544 1.26809 0.85114 0.78192 0.78653 0.77449 1.18020 1.18868 1.19461 1.22362 1.03688 0.98519 0.91453 1.66579 1.15832 1.02898 1.39889 0.83389 0.81339 0.81671 0.83385 0.90037 0.94341 0.77154 0.86112 0.86538 0.90308 0.84756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -17.46 18.54 19.00 0.35 -17.10 16 2 C 0.27 8.03 13.99 88.33 1.24 9.26 16 3 C -0.04 -0.77 5.73 -21.36 -0.12 -0.89 16 4 C -0.07 -0.92 9.76 22.54 0.22 -0.70 16 5 C -0.11 -0.82 10.03 22.23 0.22 -0.60 16 6 C -0.08 -0.64 10.04 22.33 0.22 -0.42 16 7 C -0.10 -1.40 9.66 22.23 0.21 -1.19 16 8 C -0.06 -1.28 5.28 -19.59 -0.10 -1.39 16 9 C 0.17 4.94 4.42 85.64 0.38 5.32 16 10 N -0.73 -26.64 5.70 -348.60 -1.99 -28.63 16 11 C 0.28 13.35 7.64 133.32 1.02 14.37 16 12 C -0.21 -10.00 9.24 22.24 0.21 -9.79 16 13 C -0.11 -5.90 8.74 22.64 0.20 -5.70 16 14 C 0.00 0.00 5.59 -21.18 -0.12 -0.11 16 15 C -0.49 -27.03 9.07 23.39 0.21 -26.82 16 16 H 0.08 4.17 7.90 -2.91 -0.02 4.15 16 17 C 0.03 1.64 5.17 85.23 0.44 2.08 16 18 N -0.84 -45.06 10.92 21.82 0.24 -44.82 16 19 Si 0.99 39.07 29.59 68.60 2.03 41.10 16 20 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 21 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 22 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 23 C 0.00 -0.17 10.97 85.36 0.94 0.77 16 24 N -0.54 -27.45 10.37 -191.20 -1.98 -29.44 16 25 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 26 H 0.17 0.18 8.06 -2.91 -0.02 0.16 16 27 H 0.17 0.30 8.06 -2.91 -0.02 0.28 16 28 H 0.15 1.68 8.03 -2.91 -0.02 1.65 16 29 H 0.08 2.10 7.75 -2.38 -0.02 2.08 16 30 H 0.04 1.26 7.25 -2.39 -0.02 1.24 16 31 H 0.39 13.77 8.58 -92.71 -0.80 12.98 16 32 H 0.12 5.08 6.64 -2.91 -0.02 5.06 16 33 H 0.12 6.48 6.19 -2.91 -0.02 6.46 16 34 H 0.29 13.92 8.30 -92.71 -0.77 13.15 16 35 H 0.14 6.73 8.06 -2.91 -0.02 6.71 16 Total: -1.00 -71.63 314.67 4.16 -67.47 By element: Atomic # 1 Polarization: 26.89 SS G_CDS: 0.34 Total: 27.23 kcal Atomic # 6 Polarization: -20.97 SS G_CDS: 5.16 Total: -15.80 kcal Atomic # 7 Polarization: -116.61 SS G_CDS: -3.38 Total: -119.99 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 2.03 Total: 41.10 kcal Total: -71.63 4.16 -67.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167632172.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.082 kcal (2) G-P(sol) polarization free energy of solvation -71.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds