Wall clock time and date at job start Wed Apr 15 2020 11:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39650 * 120.15163 * 304.29458 * 3 2 1 5 5 C 1.37927 * 119.84466 * 180.25513 * 4 3 2 6 6 C 1.38377 * 120.15438 * 359.75227 * 5 4 3 7 7 C 1.38342 * 120.30625 * 359.97438 * 6 5 4 8 8 C 1.37974 * 120.14627 * 359.97438 * 7 6 5 9 9 C 1.50707 * 120.07231 * 180.02562 * 8 7 6 10 10 N 1.46500 * 109.47116 * 259.99890 * 9 8 7 11 11 C 1.38085 * 120.00006 * 180.02562 * 10 9 8 12 12 N 1.32271 * 119.90364 * 0.02562 * 11 10 9 13 13 C 1.31973 * 121.86256 * 179.72826 * 12 11 10 14 14 C 1.38685 * 121.44617 * 0.54404 * 13 12 11 15 15 C 1.38003 * 119.62595 * 359.44661 * 14 13 12 16 16 C 1.40997 * 118.28398 * 0.27473 * 15 14 13 17 17 C 1.41015 * 120.70549 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00443 * 150.05404 * 17 16 15 19 19 C 1.39956 * 120.00280 * 330.04646 * 17 16 15 20 20 N 1.30863 * 120.00428 * 162.11447 * 19 17 16 21 21 Si 1.86800 * 119.99578 * 342.11960 * 19 17 16 22 22 H 1.48500 * 109.47173 * 95.37214 * 21 19 17 23 23 H 1.48500 * 109.47097 * 215.37242 * 21 19 17 24 24 H 1.48508 * 109.47220 * 335.37241 * 21 19 17 25 25 H 1.08001 * 120.08015 * 359.97438 * 4 3 2 26 26 H 1.08003 * 119.92453 * 179.76903 * 5 4 3 27 27 H 1.08000 * 119.85452 * 180.02562 * 6 5 4 28 28 H 1.07996 * 119.92955 * 180.02562 * 7 6 5 29 29 H 1.08999 * 109.46598 * 140.00171 * 9 8 7 30 30 H 1.08999 * 109.46969 * 20.00333 * 9 8 7 31 31 H 0.96998 * 119.99830 * 0.02562 * 10 9 8 32 32 H 1.08004 * 119.27443 * 180.28844 * 13 12 11 33 33 H 1.08005 * 120.18434 * 179.72054 * 14 13 12 34 34 H 1.08005 * 120.85662 * 180.29907 * 15 14 13 35 35 H 0.96996 * 120.00345 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2697 -0.6794 0.9976 5 6 4.6489 -0.6703 0.9945 6 6 5.3373 0.0064 0.0031 7 6 4.6486 0.6775 -0.9915 8 6 3.2689 0.6757 -1.0011 9 6 2.5202 1.4068 -2.0856 10 7 2.0626 2.7016 -1.5755 11 6 1.3485 3.5533 -2.3949 12 7 1.0782 3.1978 -3.6400 13 6 0.3943 3.9791 -4.4546 14 6 -0.0674 5.2218 -4.0474 15 6 0.1800 5.6531 -2.7600 16 6 0.9070 4.8053 -1.8994 17 6 1.1882 5.1948 -0.5736 18 1 1.2874 4.4471 0.1994 19 6 1.3390 6.5502 -0.2594 20 7 1.2497 6.9476 0.9842 21 14 1.6675 7.7923 -1.6154 22 1 0.3857 8.4071 -2.0447 23 1 2.5783 8.8497 -1.1081 24 1 2.2997 7.1073 -2.7716 25 1 2.7337 -1.2076 1.7724 26 1 5.1930 -1.1927 1.7676 27 1 6.4173 0.0101 0.0051 28 1 5.1920 1.2033 -1.7626 29 1 1.6598 0.8140 -2.3961 30 1 3.1796 1.5649 -2.9390 31 1 2.2613 2.9606 -0.6621 32 1 0.1934 3.6450 -5.4618 33 1 -0.6213 5.8465 -4.7325 34 1 -0.1745 6.6152 -2.4205 35 1 1.3538 7.8870 1.2019 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167632259.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:43 Heat of formation + Delta-G solvation = 86.834011 kcal Electronic energy + Delta-G solvation = -20221.526232 eV Core-core repulsion = 17184.130393 eV Total energy + Delta-G solvation = -3037.395839 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.78416 -38.65013 -36.22463 -35.05885 -33.89046 -31.77057 -31.37037 -31.19974 -28.87227 -25.89328 -25.04549 -23.73066 -22.19845 -21.16648 -20.79351 -18.70865 -17.48281 -16.95503 -16.01009 -15.78097 -15.43498 -15.05337 -14.47632 -13.99498 -13.83081 -13.54294 -13.43909 -13.14396 -13.07783 -12.75693 -12.61678 -12.33430 -12.22787 -12.03984 -11.98693 -11.45368 -11.31110 -11.04492 -10.78958 -10.29436 -9.91223 -9.43779 -9.17921 -9.08533 -8.97490 -8.23659 -8.11813 -6.95672 -6.77333 -4.37926 0.70745 1.15845 2.55926 2.75918 2.87133 3.02448 3.09602 3.18916 3.30583 3.78852 3.96519 3.96945 4.40779 4.58460 4.65619 4.73740 4.85307 5.15263 5.31063 5.45209 5.56898 5.72982 5.85830 5.87949 6.08332 6.11797 6.13909 6.26031 6.40458 6.44219 6.54878 6.68188 6.82036 7.05525 7.32309 7.57430 7.66947 7.78391 8.04736 8.29786 8.34725 8.68284 8.76970 9.55271 10.06541 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.017181 B = 0.005478 C = 0.004927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.339952 B = 5110.507347 C = 5681.175428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C 0.248 3.752 3 C -0.011 4.011 4 C -0.075 4.075 5 C -0.121 4.121 6 C -0.094 4.094 7 C -0.101 4.101 8 C -0.049 4.049 9 C 0.175 3.825 10 N -0.721 5.721 11 C 0.325 3.675 12 N -0.528 5.528 13 C 0.004 3.996 14 C -0.171 4.171 15 C -0.199 4.199 16 C 0.018 3.982 17 C -0.442 4.442 18 H 0.088 0.912 19 C 0.086 3.914 20 N -0.810 5.810 21 Si 0.911 3.089 22 H -0.271 1.271 23 H -0.291 1.291 24 H -0.247 1.247 25 H 0.132 0.868 26 H 0.131 0.869 27 H 0.130 0.870 28 H 0.135 0.865 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.408 0.592 32 H 0.123 0.877 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.492 -10.606 -0.490 14.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.078 5.078 2 C -0.067 4.067 3 C -0.015 4.015 4 C -0.096 4.096 5 C -0.139 4.139 6 C -0.113 4.113 7 C -0.120 4.120 8 C -0.053 4.053 9 C 0.050 3.950 10 N -0.361 5.361 11 C 0.085 3.915 12 N -0.245 5.245 13 C -0.148 4.148 14 C -0.193 4.193 15 C -0.225 4.225 16 C 0.010 3.990 17 C -0.472 4.472 18 H 0.106 0.894 19 C -0.133 4.133 20 N -0.435 5.435 21 Si 0.737 3.263 22 H -0.197 1.197 23 H -0.219 1.219 24 H -0.170 1.170 25 H 0.149 0.851 26 H 0.149 0.851 27 H 0.148 0.852 28 H 0.153 0.847 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.245 0.755 32 H 0.141 0.859 33 H 0.118 0.882 34 H 0.125 0.875 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.010 -11.356 -0.735 13.916 hybrid contribution 0.233 1.700 0.219 1.729 sum 8.243 -9.656 -0.516 12.706 Atomic orbital electron populations 1.81241 1.12024 1.07580 1.06973 1.25560 0.92649 0.94232 0.94301 1.15966 0.84581 1.02723 0.98212 1.21160 0.94452 0.97266 0.96698 1.21079 0.93555 1.00106 0.99163 1.21386 1.00404 0.95676 0.93832 1.21099 0.92776 0.98861 0.99249 1.20235 0.94097 0.95829 0.95091 1.19930 0.97136 0.85010 0.92884 1.43718 1.61613 1.16135 1.14655 1.18363 0.94872 0.90218 0.88050 1.66599 1.18460 1.35779 1.03710 1.21394 1.03130 0.92471 0.97790 1.21293 1.03653 0.97770 0.96612 1.21019 1.05132 1.01181 0.95147 1.18049 0.94520 0.91879 0.94525 1.19072 1.42160 0.93137 0.92833 0.89371 1.26066 0.91529 0.99299 0.96397 1.69700 1.35376 1.18523 1.19862 0.86296 0.78936 0.79087 0.81933 1.19738 1.21863 1.16992 0.85052 0.85097 0.85249 0.84681 0.92116 0.91259 0.75471 0.85906 0.88208 0.87532 0.90507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -7.63 18.54 41.84 0.78 -6.85 16 2 C 0.25 4.02 14.00 -22.47 -0.31 3.71 16 3 C -0.01 -0.14 5.73 -106.93 -0.61 -0.76 16 4 C -0.08 -0.75 9.76 -39.17 -0.38 -1.13 16 5 C -0.12 -0.98 10.03 -39.64 -0.40 -1.38 16 6 C -0.09 -0.79 10.04 -39.49 -0.40 -1.19 16 7 C -0.10 -1.07 9.66 -39.64 -0.38 -1.45 16 8 C -0.05 -0.65 5.28 -104.20 -0.55 -1.20 16 9 C 0.18 2.89 5.22 -5.19 -0.03 2.86 16 10 N -0.72 -14.63 5.60 -61.15 -0.34 -14.97 16 11 C 0.32 7.74 7.52 -155.03 -1.17 6.57 16 12 N -0.53 -12.31 9.54 -11.86 -0.11 -12.42 16 13 C 0.00 0.08 11.17 -17.33 -0.19 -0.11 16 14 C -0.17 -3.82 10.08 -39.50 -0.40 -4.22 16 15 C -0.20 -4.90 7.27 -38.62 -0.28 -5.18 16 16 C 0.02 0.46 5.12 -106.48 -0.55 -0.09 16 17 C -0.44 -11.66 8.94 -37.89 -0.34 -12.00 16 18 H 0.09 2.40 7.03 -52.49 -0.37 2.03 16 19 C 0.09 2.21 5.42 -17.32 -0.09 2.12 16 20 N -0.81 -21.32 13.93 55.55 0.77 -20.55 16 21 Si 0.91 20.80 24.53 -169.99 -4.17 16.63 16 22 H -0.27 -6.06 6.71 56.52 0.38 -5.68 16 23 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.25 -5.84 6.85 56.52 0.39 -5.45 16 25 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 26 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 27 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 28 H 0.14 1.26 8.03 -52.49 -0.42 0.84 16 29 H 0.06 1.09 7.49 -51.93 -0.39 0.70 16 30 H 0.07 1.10 8.00 -51.93 -0.42 0.69 16 31 H 0.41 8.32 6.75 -40.82 -0.28 8.04 16 32 H 0.12 2.33 8.06 -52.48 -0.42 1.91 16 33 H 0.10 1.92 8.06 -52.48 -0.42 1.50 16 34 H 0.11 2.60 4.82 -52.48 -0.25 2.35 16 35 H 0.28 6.83 8.30 -40.82 -0.34 6.49 16 LS Contribution 308.75 15.07 4.65 4.65 Total: -1.00 -30.36 308.75 -7.91 -38.27 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -3.41 Total: 8.68 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: -6.08 Total: -13.44 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: 1.09 Total: -54.79 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.17 Total: 16.63 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.36 -7.91 -38.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167632259.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.108 kcal (2) G-P(sol) polarization free energy of solvation -30.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds