Wall clock time and date at job start Wed Apr 15 2020 11:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39650 * 120.15163 * 304.29458 * 3 2 1 5 5 C 1.37927 * 119.84466 * 180.25513 * 4 3 2 6 6 C 1.38377 * 120.15438 * 359.75227 * 5 4 3 7 7 C 1.38342 * 120.30625 * 359.97438 * 6 5 4 8 8 C 1.37974 * 120.14627 * 359.97438 * 7 6 5 9 9 C 1.50707 * 120.07231 * 180.02562 * 8 7 6 10 10 N 1.46500 * 109.47116 * 259.99890 * 9 8 7 11 11 C 1.38085 * 120.00006 * 180.02562 * 10 9 8 12 12 N 1.32271 * 119.90364 * 0.02562 * 11 10 9 13 13 C 1.31973 * 121.86256 * 179.72826 * 12 11 10 14 14 C 1.38685 * 121.44617 * 0.54404 * 13 12 11 15 15 C 1.38003 * 119.62595 * 359.44661 * 14 13 12 16 16 C 1.40997 * 118.28398 * 0.27473 * 15 14 13 17 17 C 1.41015 * 120.70549 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00443 * 150.05404 * 17 16 15 19 19 C 1.39956 * 120.00280 * 330.04646 * 17 16 15 20 20 N 1.30863 * 120.00428 * 162.11447 * 19 17 16 21 21 Si 1.86800 * 119.99578 * 342.11960 * 19 17 16 22 22 H 1.48500 * 109.47173 * 95.37214 * 21 19 17 23 23 H 1.48500 * 109.47097 * 215.37242 * 21 19 17 24 24 H 1.48508 * 109.47220 * 335.37241 * 21 19 17 25 25 H 1.08001 * 120.08015 * 359.97438 * 4 3 2 26 26 H 1.08003 * 119.92453 * 179.76903 * 5 4 3 27 27 H 1.08000 * 119.85452 * 180.02562 * 6 5 4 28 28 H 1.07996 * 119.92955 * 180.02562 * 7 6 5 29 29 H 1.08999 * 109.46598 * 140.00171 * 9 8 7 30 30 H 1.08999 * 109.46969 * 20.00333 * 9 8 7 31 31 H 0.96998 * 119.99830 * 0.02562 * 10 9 8 32 32 H 1.08004 * 119.27443 * 180.28844 * 13 12 11 33 33 H 1.08005 * 120.18434 * 179.72054 * 14 13 12 34 34 H 1.08005 * 120.85662 * 180.29907 * 15 14 13 35 35 H 0.96996 * 120.00345 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2697 -0.6794 0.9976 5 6 4.6489 -0.6703 0.9945 6 6 5.3373 0.0064 0.0031 7 6 4.6486 0.6775 -0.9915 8 6 3.2689 0.6757 -1.0011 9 6 2.5202 1.4068 -2.0856 10 7 2.0626 2.7016 -1.5755 11 6 1.3485 3.5533 -2.3949 12 7 1.0782 3.1978 -3.6400 13 6 0.3943 3.9791 -4.4546 14 6 -0.0674 5.2218 -4.0474 15 6 0.1800 5.6531 -2.7600 16 6 0.9070 4.8053 -1.8994 17 6 1.1882 5.1948 -0.5736 18 1 1.2874 4.4471 0.1994 19 6 1.3390 6.5502 -0.2594 20 7 1.2497 6.9476 0.9842 21 14 1.6675 7.7923 -1.6154 22 1 0.3857 8.4071 -2.0447 23 1 2.5783 8.8497 -1.1081 24 1 2.2997 7.1073 -2.7716 25 1 2.7337 -1.2076 1.7724 26 1 5.1930 -1.1927 1.7676 27 1 6.4173 0.0101 0.0051 28 1 5.1920 1.2033 -1.7626 29 1 1.6598 0.8140 -2.3961 30 1 3.1796 1.5649 -2.9390 31 1 2.2613 2.9606 -0.6621 32 1 0.1934 3.6450 -5.4618 33 1 -0.6213 5.8465 -4.7325 34 1 -0.1745 6.6152 -2.4205 35 1 1.3538 7.8870 1.2019 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167632259.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:43 Heat of formation + Delta-G solvation = 68.881608 kcal Electronic energy + Delta-G solvation = -20222.304707 eV Core-core repulsion = 17184.130393 eV Total energy + Delta-G solvation = -3038.174313 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.87599 -40.28616 -37.49504 -36.53621 -35.80118 -33.11503 -32.97139 -32.24459 -30.44331 -27.44464 -26.68217 -24.66526 -23.71026 -22.64601 -22.36046 -19.69437 -19.40406 -18.60554 -17.35602 -17.08313 -16.78298 -16.41273 -15.66133 -15.37820 -15.21207 -15.17700 -15.07904 -14.77086 -14.17101 -14.12538 -13.91059 -13.85459 -13.75398 -13.63100 -13.21637 -13.16894 -12.64670 -12.29158 -12.11054 -11.97205 -11.77674 -11.33023 -10.86494 -10.13649 -10.06532 -9.89493 -9.77531 -8.88356 -8.53736 -6.33767 -0.21432 0.34953 0.71071 0.89647 1.25623 1.36980 1.47395 1.61157 1.97176 2.11661 2.60178 2.66701 2.87535 3.07352 3.56532 3.61610 3.87342 4.14156 4.19901 4.32441 4.38922 4.48656 4.58041 4.66263 4.68162 4.76051 4.84421 5.02789 5.04572 5.19616 5.37240 5.48416 5.48902 5.52845 5.70573 5.93211 5.94116 6.16352 6.38855 6.43491 6.65088 6.75810 6.92736 7.73455 8.19236 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.017181 B = 0.005478 C = 0.004927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.339952 B = 5110.507347 C = 5681.175428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C 0.269 3.731 3 C -0.039 4.039 4 C -0.070 4.070 5 C -0.107 4.107 6 C -0.079 4.079 7 C -0.104 4.104 8 C -0.066 4.066 9 C 0.180 3.820 10 N -0.718 5.718 11 C 0.317 3.683 12 N -0.539 5.539 13 C 0.015 3.985 14 C -0.181 4.181 15 C -0.206 4.206 16 C -0.012 4.012 17 C -0.465 4.465 18 H 0.061 0.939 19 C 0.052 3.948 20 N -0.848 5.848 21 Si 0.962 3.038 22 H -0.262 1.262 23 H -0.276 1.276 24 H -0.260 1.260 25 H 0.149 0.851 26 H 0.171 0.829 27 H 0.167 0.833 28 H 0.146 0.854 29 H 0.039 0.961 30 H 0.075 0.925 31 H 0.404 0.596 32 H 0.161 0.839 33 H 0.136 0.864 34 H 0.106 0.894 35 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.795 -11.334 -1.422 16.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.145 5.145 2 C -0.046 4.046 3 C -0.043 4.043 4 C -0.091 4.091 5 C -0.125 4.125 6 C -0.097 4.097 7 C -0.123 4.123 8 C -0.069 4.069 9 C 0.056 3.944 10 N -0.356 5.356 11 C 0.077 3.923 12 N -0.258 5.258 13 C -0.137 4.137 14 C -0.204 4.204 15 C -0.232 4.232 16 C -0.020 4.020 17 C -0.496 4.496 18 H 0.079 0.921 19 C -0.162 4.162 20 N -0.475 5.475 21 Si 0.787 3.213 22 H -0.188 1.188 23 H -0.203 1.203 24 H -0.184 1.184 25 H 0.167 0.833 26 H 0.188 0.812 27 H 0.184 0.816 28 H 0.164 0.836 29 H 0.057 0.943 30 H 0.093 0.907 31 H 0.241 0.759 32 H 0.178 0.822 33 H 0.154 0.846 34 H 0.123 0.877 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.328 -12.111 -1.647 16.002 hybrid contribution -0.406 1.739 0.412 1.833 sum 9.923 -10.372 -1.235 14.407 Atomic orbital electron populations 1.81227 1.13891 1.10111 1.09231 1.26233 0.93423 0.92408 0.92493 1.16163 0.82850 1.05169 1.00121 1.21455 0.95559 0.96245 0.95817 1.21562 0.92615 0.98866 0.99465 1.21839 1.02225 0.93446 0.92221 1.21294 0.91459 0.99150 1.00367 1.19981 0.95124 0.96981 0.94789 1.19943 0.96696 0.83223 0.94499 1.43908 1.60609 1.16976 1.14125 1.18647 0.94718 0.90294 0.88612 1.66760 1.19252 1.36217 1.03581 1.22156 1.00656 0.91966 0.98962 1.21647 1.03964 0.98460 0.96295 1.21247 1.04685 1.01088 0.96175 1.18243 0.95858 0.93295 0.94596 1.18983 1.44529 0.93211 0.92884 0.92084 1.26645 0.91207 1.00351 0.98040 1.69723 1.37273 1.19391 1.21077 0.85509 0.79174 0.77431 0.79196 1.18786 1.20293 1.18393 0.83321 0.81191 0.81560 0.83578 0.94281 0.90656 0.75946 0.82171 0.84625 0.87661 0.89704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -18.84 18.54 19.00 0.35 -18.48 16 2 C 0.27 9.13 14.00 88.33 1.24 10.36 16 3 C -0.04 -1.02 5.73 -21.36 -0.12 -1.14 16 4 C -0.07 -1.24 9.76 22.54 0.22 -1.02 16 5 C -0.11 -1.28 10.03 22.23 0.22 -1.05 16 6 C -0.08 -0.98 10.04 22.33 0.22 -0.76 16 7 C -0.10 -1.95 9.66 22.23 0.21 -1.74 16 8 C -0.07 -1.71 5.28 -19.59 -0.10 -1.81 16 9 C 0.18 6.07 5.22 85.64 0.45 6.52 16 10 N -0.72 -30.17 5.60 -347.37 -1.95 -32.11 16 11 C 0.32 15.39 7.52 134.05 1.01 16.39 16 12 N -0.54 -24.86 9.54 -191.45 -1.83 -26.68 16 13 C 0.01 0.62 11.17 84.78 0.95 1.57 16 14 C -0.18 -7.73 10.08 22.32 0.22 -7.51 16 15 C -0.21 -10.07 7.27 22.89 0.17 -9.91 16 16 C -0.01 -0.65 5.12 -21.07 -0.11 -0.76 16 17 C -0.46 -25.65 8.94 23.37 0.21 -25.44 16 18 H 0.06 3.57 7.03 -2.91 -0.02 3.55 16 19 C 0.05 2.77 5.42 85.25 0.46 3.23 16 20 N -0.85 -45.99 13.93 21.83 0.30 -45.68 16 21 Si 0.96 43.06 24.53 68.60 1.68 44.74 16 22 H -0.26 -11.23 6.71 99.48 0.67 -10.56 16 23 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 24 H -0.26 -12.06 6.85 99.48 0.68 -11.38 16 25 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 26 H 0.17 0.80 8.06 -2.91 -0.02 0.78 16 27 H 0.17 0.94 8.06 -2.91 -0.02 0.92 16 28 H 0.15 2.37 8.03 -2.91 -0.02 2.35 16 29 H 0.04 1.47 7.49 -2.39 -0.02 1.45 16 30 H 0.08 2.41 8.00 -2.39 -0.02 2.39 16 31 H 0.40 17.41 6.75 -92.71 -0.63 16.79 16 32 H 0.16 5.46 8.06 -2.91 -0.02 5.44 16 33 H 0.14 4.74 8.06 -2.91 -0.02 4.72 16 34 H 0.11 5.09 4.82 -2.91 -0.01 5.08 16 35 H 0.29 14.32 8.30 -92.71 -0.77 13.55 16 Total: -1.00 -69.27 308.75 4.26 -65.00 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: 0.45 Total: 26.27 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: 5.25 Total: -13.05 kcal Atomic # 7 Polarization: -119.84 SS G_CDS: -3.12 Total: -122.96 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 1.68 Total: 44.74 kcal Total: -69.27 4.26 -65.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167632259.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.885 kcal (2) G-P(sol) polarization free energy of solvation -69.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds