Wall clock time and date at job start Wed Apr 15 2020 11:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30900 * 1 3 3 Si 1.86797 * 120.00352 * 2 1 4 4 H 1.48502 * 109.47115 * 89.99907 * 3 2 1 5 5 H 1.48502 * 109.47284 * 210.00227 * 3 2 1 6 6 H 1.48504 * 109.46823 * 330.00009 * 3 2 1 7 7 C 1.39913 * 119.99599 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00460 * 17.41969 * 7 2 1 9 9 C 1.41019 * 119.99600 * 197.41783 * 7 2 1 10 10 C 1.40751 * 120.29400 * 29.10165 * 9 7 2 11 11 C 1.36404 * 119.96557 * 179.73673 * 10 9 7 12 12 C 1.39056 * 120.57844 * 0.56489 * 11 10 9 13 13 Cl 1.73597 * 119.70497 * 179.71400 * 12 11 10 14 14 C 1.38320 * 120.59240 * 359.68444 * 12 11 10 15 15 C 1.38680 * 120.01447 * 0.02970 * 14 12 11 16 16 N 1.38746 * 120.28527 * 180.02562 * 15 14 12 17 17 C 1.46503 * 119.99917 * 359.97438 * 16 15 14 18 18 C 1.53000 * 109.47307 * 179.97438 * 17 16 15 19 19 C 1.53000 * 109.47205 * 180.02562 * 18 17 16 20 20 C 1.53786 * 113.61202 * 274.13484 * 19 18 17 21 21 C 1.53944 * 87.01957 * 220.05113 * 20 19 18 22 22 C 1.53784 * 113.61225 * 176.52989 * 19 18 17 23 23 H 0.97000 * 119.99787 * 175.40610 * 1 2 3 24 24 H 1.08004 * 120.01295 * 0.02562 * 10 9 7 25 25 H 1.08003 * 119.71311 * 180.26907 * 11 10 9 26 26 H 1.07996 * 119.99089 * 180.02562 * 14 12 11 27 27 H 0.96996 * 120.00611 * 179.97438 * 16 15 14 28 28 H 1.08999 * 109.47335 * 300.00352 * 17 16 15 29 29 H 1.08998 * 109.47011 * 59.99985 * 17 16 15 30 30 H 1.09007 * 109.47111 * 300.00210 * 18 17 16 31 31 H 1.08998 * 109.47010 * 60.00091 * 18 17 16 32 32 H 1.08992 * 112.85011 * 45.33359 * 19 18 17 33 33 H 1.08998 * 113.61241 * 334.57143 * 20 19 18 34 34 H 1.08998 * 113.61311 * 105.46768 * 20 19 18 35 35 H 1.09008 * 113.53723 * 270.81054 * 21 20 19 36 36 H 1.08996 * 113.67265 * 139.93601 * 21 20 19 37 37 H 1.08991 * 113.61286 * 254.52283 * 22 19 18 38 38 H 1.08997 * 113.61646 * 25.34953 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.4906 2.0463 1.4001 5 1 3.5406 1.4401 -0.7001 6 1 1.4405 2.6526 -0.7001 7 6 2.0085 -1.2117 -0.0005 8 1 1.5057 -2.1254 -0.2809 9 6 3.3702 -1.2399 0.3650 10 6 3.8814 -0.2931 1.2724 11 6 5.1985 -0.3299 1.6255 12 6 6.0486 -1.2898 1.0874 13 17 7.7225 -1.3111 1.5470 14 6 5.5723 -2.2282 0.1898 15 6 4.2362 -2.2172 -0.1818 16 7 3.7524 -3.1562 -1.0813 17 6 4.6541 -4.1648 -1.6434 18 6 3.8745 -5.0702 -2.5989 19 6 4.8161 -6.1239 -3.1854 20 6 5.5753 -5.6450 -4.4341 21 6 5.3396 -7.0499 -5.0177 22 6 4.1105 -7.1410 -4.0979 23 1 -0.4850 -0.8374 -0.0673 24 1 3.2302 0.4591 1.6924 25 1 5.5855 0.3959 2.3254 26 1 6.2410 -2.9697 -0.2217 27 1 2.8171 -3.1449 -1.3382 28 1 5.4592 -3.6700 -2.1866 29 1 5.0754 -4.7651 -0.8370 30 1 3.0696 -5.5650 -2.0552 31 1 3.4529 -4.4701 -3.4053 32 1 5.4578 -6.5834 -2.4337 33 1 5.0620 -4.8535 -4.9802 34 1 6.6251 -5.4193 -4.2469 35 1 6.1257 -7.7625 -4.7678 36 1 5.0915 -7.0469 -6.0790 37 1 3.9797 -8.1213 -3.6399 38 1 3.1954 -6.7599 -4.5510 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168891002.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:45 Heat of formation + Delta-G solvation = 9.993654 kcal Electronic energy + Delta-G solvation = -18989.174434 eV Core-core repulsion = 16049.554042 eV Total energy + Delta-G solvation = -2939.620393 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.14418 -38.31586 -35.70148 -34.92547 -33.59554 -31.17530 -30.11840 -27.88526 -25.76824 -24.90983 -24.26937 -22.19914 -20.65743 -20.24726 -19.44363 -18.19154 -16.63446 -15.77955 -15.38335 -14.89615 -14.70034 -14.24345 -14.12554 -13.44815 -13.16807 -12.99434 -12.57062 -12.56864 -12.54005 -12.33168 -12.11464 -11.37755 -11.22330 -11.02557 -10.79745 -10.75851 -10.63979 -10.34285 -10.22628 -10.18197 -10.08495 -9.84813 -9.44361 -9.04074 -8.96188 -7.70879 -7.30613 -6.61475 -4.41766 2.46728 2.71917 3.20566 3.28518 3.35408 3.55721 4.01822 4.23279 4.48874 4.50920 4.54284 4.70411 4.75968 5.21619 5.31738 5.44002 5.47948 5.58368 5.64013 5.66678 5.75632 5.83512 5.86181 5.96711 6.10141 6.14314 6.21767 6.31125 6.44020 6.53954 6.72626 6.87713 7.11259 7.33896 7.52275 7.61304 7.75264 8.03297 8.36084 8.45054 8.72948 8.77063 10.01095 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.012920 B = 0.005410 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.711638 B = 5174.399720 C = 6978.032446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.043 3.957 3 Si 1.073 2.927 4 H -0.276 1.276 5 H -0.262 1.262 6 H -0.292 1.292 7 C -0.513 4.513 8 H 0.074 0.926 9 C 0.060 3.940 10 C -0.220 4.220 11 C -0.103 4.103 12 C -0.107 4.107 13 Cl -0.128 7.128 14 C -0.161 4.161 15 C 0.136 3.864 16 N -0.745 5.745 17 C 0.135 3.865 18 C -0.120 4.120 19 C -0.106 4.106 20 C -0.138 4.138 21 C -0.144 4.144 22 C -0.137 4.137 23 H 0.284 0.716 24 H 0.113 0.887 25 H 0.101 0.899 26 H 0.104 0.896 27 H 0.398 0.602 28 H 0.048 0.952 29 H 0.046 0.954 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.256 -8.798 -6.285 13.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.175 4.175 3 Si 0.900 3.100 4 H -0.203 1.203 5 H -0.187 1.187 6 H -0.219 1.219 7 C -0.542 4.542 8 H 0.092 0.908 9 C 0.055 3.945 10 C -0.240 4.240 11 C -0.123 4.123 12 C -0.135 4.135 13 Cl -0.100 7.100 14 C -0.185 4.185 15 C 0.035 3.965 16 N -0.379 5.379 17 C 0.009 3.991 18 C -0.158 4.158 19 C -0.125 4.125 20 C -0.175 4.175 21 C -0.181 4.181 22 C -0.175 4.175 23 H 0.095 0.905 24 H 0.130 0.870 25 H 0.119 0.881 26 H 0.122 0.878 27 H 0.234 0.766 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.222 -7.320 -6.261 12.040 hybrid contribution -0.104 -1.829 -0.023 1.833 sum 7.119 -9.150 -6.284 13.186 Atomic orbital electron populations 1.70583 1.07975 1.32839 1.32931 1.27204 0.95599 1.04322 0.90401 0.83567 0.75533 0.73031 0.77875 1.20341 1.18681 1.21941 1.20284 0.94778 0.96497 1.42646 0.90796 1.17499 0.93124 0.91713 0.92155 1.20523 0.95041 1.04677 1.03770 1.20047 0.93402 0.98034 1.00845 1.19867 0.82590 1.03583 1.07437 1.98229 1.20664 1.98637 1.92474 1.19876 0.94072 1.01496 1.03076 1.17683 0.91335 0.93854 0.93637 1.44015 1.11366 1.32952 1.49543 1.21076 0.93116 0.89698 0.95169 1.21735 0.98297 0.96658 0.99067 1.22467 0.97619 0.96300 0.96098 1.23020 1.00688 0.96814 0.97016 1.22837 0.98388 0.97717 0.99158 1.22936 0.97626 0.99238 0.97692 0.90461 0.86958 0.88062 0.87813 0.76618 0.93371 0.93589 0.91520 0.91404 0.89186 0.90032 0.91536 0.90416 0.91705 0.91717 0.90139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -21.49 13.66 55.55 0.76 -20.74 16 2 C 0.04 1.11 5.42 -17.32 -0.09 1.01 16 3 Si 1.07 24.07 24.90 -169.99 -4.23 19.84 16 4 H -0.28 -5.92 6.44 56.52 0.36 -5.55 16 5 H -0.26 -5.91 7.02 56.52 0.40 -5.51 16 6 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.51 -13.02 8.81 -37.90 -0.33 -13.36 16 8 H 0.07 1.90 6.99 -52.49 -0.37 1.53 16 9 C 0.06 1.48 5.15 -106.63 -0.55 0.93 16 10 C -0.22 -5.21 7.21 -39.29 -0.28 -5.49 16 11 C -0.10 -2.27 9.74 -39.94 -0.39 -2.66 16 12 C -0.11 -2.30 6.33 -39.25 -0.25 -2.54 16 13 Cl -0.13 -2.37 28.94 -51.86 -1.50 -3.88 16 14 C -0.16 -3.43 9.07 -39.39 -0.36 -3.79 16 15 C 0.14 3.05 6.68 -83.30 -0.56 2.49 16 16 N -0.75 -14.35 5.63 -58.21 -0.33 -14.67 16 17 C 0.13 2.06 4.90 -4.04 -0.02 2.04 16 18 C -0.12 -1.48 5.15 -26.73 -0.14 -1.62 16 19 C -0.11 -1.10 3.64 -89.80 -0.33 -1.43 16 20 C -0.14 -1.36 7.65 -25.83 -0.20 -1.56 16 21 C -0.14 -1.24 8.09 -25.83 -0.21 -1.45 16 22 C -0.14 -1.27 7.65 -25.92 -0.20 -1.47 16 23 H 0.28 7.23 8.73 -40.82 -0.36 6.87 16 24 H 0.11 2.64 4.41 -52.48 -0.23 2.41 16 25 H 0.10 2.01 8.06 -52.48 -0.42 1.59 16 26 H 0.10 2.03 6.73 -52.49 -0.35 1.68 16 27 H 0.40 7.73 6.77 -40.82 -0.28 7.46 16 28 H 0.05 0.75 7.94 -51.93 -0.41 0.34 16 29 H 0.05 0.71 7.94 -51.93 -0.41 0.30 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.85 7.88 -51.93 -0.41 0.44 16 32 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.08 0.83 7.92 -51.93 -0.41 0.42 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 LS Contribution 319.48 15.07 4.81 4.81 Total: -1.00 -25.83 319.48 -9.83 -35.67 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -5.45 Total: 7.85 kcal Atomic # 6 Polarization: -24.99 SS G_CDS: -3.90 Total: -28.89 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: 0.43 Total: -35.41 kcal Atomic # 14 Polarization: 24.07 SS G_CDS: -4.23 Total: 19.84 kcal Atomic # 17 Polarization: -2.37 SS G_CDS: -1.50 Total: -3.88 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -25.83 -9.83 -35.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168891002.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.662 kcal (2) G-P(sol) polarization free energy of solvation -25.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds