Wall clock time and date at job start Wed Apr 15 2020 11:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30900 * 1 3 3 Si 1.86797 * 120.00352 * 2 1 4 4 H 1.48502 * 109.47115 * 89.99907 * 3 2 1 5 5 H 1.48502 * 109.47284 * 210.00227 * 3 2 1 6 6 H 1.48504 * 109.46823 * 330.00009 * 3 2 1 7 7 C 1.39913 * 119.99599 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00460 * 17.41969 * 7 2 1 9 9 C 1.41019 * 119.99600 * 197.41783 * 7 2 1 10 10 C 1.40751 * 120.29400 * 29.10165 * 9 7 2 11 11 C 1.36404 * 119.96557 * 179.73673 * 10 9 7 12 12 C 1.39056 * 120.57844 * 0.56489 * 11 10 9 13 13 Cl 1.73597 * 119.70497 * 179.71400 * 12 11 10 14 14 C 1.38320 * 120.59240 * 359.68444 * 12 11 10 15 15 C 1.38680 * 120.01447 * 0.02970 * 14 12 11 16 16 N 1.38746 * 120.28527 * 180.02562 * 15 14 12 17 17 C 1.46503 * 119.99917 * 359.97438 * 16 15 14 18 18 C 1.53000 * 109.47307 * 179.97438 * 17 16 15 19 19 C 1.53000 * 109.47205 * 180.02562 * 18 17 16 20 20 C 1.53786 * 113.61202 * 274.13484 * 19 18 17 21 21 C 1.53944 * 87.01957 * 220.05113 * 20 19 18 22 22 C 1.53784 * 113.61225 * 176.52989 * 19 18 17 23 23 H 0.97000 * 119.99787 * 175.40610 * 1 2 3 24 24 H 1.08004 * 120.01295 * 0.02562 * 10 9 7 25 25 H 1.08003 * 119.71311 * 180.26907 * 11 10 9 26 26 H 1.07996 * 119.99089 * 180.02562 * 14 12 11 27 27 H 0.96996 * 120.00611 * 179.97438 * 16 15 14 28 28 H 1.08999 * 109.47335 * 300.00352 * 17 16 15 29 29 H 1.08998 * 109.47011 * 59.99985 * 17 16 15 30 30 H 1.09007 * 109.47111 * 300.00210 * 18 17 16 31 31 H 1.08998 * 109.47010 * 60.00091 * 18 17 16 32 32 H 1.08992 * 112.85011 * 45.33359 * 19 18 17 33 33 H 1.08998 * 113.61241 * 334.57143 * 20 19 18 34 34 H 1.08998 * 113.61311 * 105.46768 * 20 19 18 35 35 H 1.09008 * 113.53723 * 270.81054 * 21 20 19 36 36 H 1.08996 * 113.67265 * 139.93601 * 21 20 19 37 37 H 1.08991 * 113.61286 * 254.52283 * 22 19 18 38 38 H 1.08997 * 113.61646 * 25.34953 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.4906 2.0463 1.4001 5 1 3.5406 1.4401 -0.7001 6 1 1.4405 2.6526 -0.7001 7 6 2.0085 -1.2117 -0.0005 8 1 1.5057 -2.1254 -0.2809 9 6 3.3702 -1.2399 0.3650 10 6 3.8814 -0.2931 1.2724 11 6 5.1985 -0.3299 1.6255 12 6 6.0486 -1.2898 1.0874 13 17 7.7225 -1.3111 1.5470 14 6 5.5723 -2.2282 0.1898 15 6 4.2362 -2.2172 -0.1818 16 7 3.7524 -3.1562 -1.0813 17 6 4.6541 -4.1648 -1.6434 18 6 3.8745 -5.0702 -2.5989 19 6 4.8161 -6.1239 -3.1854 20 6 5.5753 -5.6450 -4.4341 21 6 5.3396 -7.0499 -5.0177 22 6 4.1105 -7.1410 -4.0979 23 1 -0.4850 -0.8374 -0.0673 24 1 3.2302 0.4591 1.6924 25 1 5.5855 0.3959 2.3254 26 1 6.2410 -2.9697 -0.2217 27 1 2.8171 -3.1449 -1.3382 28 1 5.4592 -3.6700 -2.1866 29 1 5.0754 -4.7651 -0.8370 30 1 3.0696 -5.5650 -2.0552 31 1 3.4529 -4.4701 -3.4053 32 1 5.4578 -6.5834 -2.4337 33 1 5.0620 -4.8535 -4.9802 34 1 6.6251 -5.4193 -4.2469 35 1 6.1257 -7.7625 -4.7678 36 1 5.0915 -7.0469 -6.0790 37 1 3.9797 -8.1213 -3.6399 38 1 3.1954 -6.7599 -4.5510 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168891002.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:45 Heat of formation + Delta-G solvation = -1.775906 kcal Electronic energy + Delta-G solvation = -18989.684801 eV Core-core repulsion = 16049.554042 eV Total energy + Delta-G solvation = -2940.130759 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.29414 -39.70942 -37.29193 -36.44886 -35.43136 -32.52076 -31.89047 -29.41329 -26.61498 -26.44335 -25.64514 -23.51592 -22.10106 -21.93816 -20.25496 -20.06003 -18.25483 -17.08177 -16.52802 -16.29491 -15.99739 -15.75278 -15.52713 -15.07708 -14.81070 -14.53551 -14.21319 -14.06784 -13.47385 -13.36855 -13.30931 -12.83349 -12.59053 -12.47679 -12.37414 -12.12376 -11.90503 -11.74304 -11.62133 -11.45019 -11.27696 -11.03856 -11.01535 -10.83646 -10.59229 -9.53546 -9.19503 -8.31527 -6.31858 0.66409 0.94994 1.40705 1.55875 1.59449 1.78820 2.21415 2.63711 2.83650 3.46290 3.64762 3.74943 3.87114 3.98685 4.20706 4.21134 4.38248 4.46251 4.54482 4.64247 4.79239 4.80582 4.88443 4.90459 4.94926 5.02467 5.08658 5.13769 5.17941 5.21946 5.33937 5.42314 5.47349 5.64187 5.66184 5.81434 5.96200 6.23338 6.50223 6.69625 6.97569 7.07369 8.08583 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.012920 B = 0.005410 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.711638 B = 5174.399720 C = 6978.032446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.013 3.987 3 Si 1.101 2.899 4 H -0.260 1.260 5 H -0.265 1.265 6 H -0.287 1.287 7 C -0.532 4.532 8 H 0.056 0.944 9 C 0.031 3.969 10 C -0.222 4.222 11 C -0.118 4.118 12 C -0.096 4.096 13 Cl -0.097 7.097 14 C -0.168 4.168 15 C 0.135 3.865 16 N -0.746 5.746 17 C 0.134 3.866 18 C -0.111 4.111 19 C -0.107 4.107 20 C -0.142 4.142 21 C -0.136 4.136 22 C -0.136 4.136 23 H 0.277 0.723 24 H 0.111 0.889 25 H 0.124 0.876 26 H 0.124 0.876 27 H 0.395 0.605 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.677 -9.481 -6.460 15.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.200 4.200 3 Si 0.923 3.077 4 H -0.186 1.186 5 H -0.190 1.190 6 H -0.214 1.214 7 C -0.563 4.563 8 H 0.074 0.926 9 C 0.025 3.975 10 C -0.243 4.243 11 C -0.139 4.139 12 C -0.123 4.123 13 Cl -0.068 7.068 14 C -0.193 4.193 15 C 0.032 3.968 16 N -0.377 5.377 17 C 0.010 3.990 18 C -0.149 4.149 19 C -0.126 4.126 20 C -0.179 4.179 21 C -0.174 4.174 22 C -0.174 4.174 23 H 0.087 0.913 24 H 0.129 0.871 25 H 0.142 0.858 26 H 0.142 0.858 27 H 0.229 0.771 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.113 0.887 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 9.658 -8.035 -6.443 14.119 hybrid contribution -0.606 -1.743 0.060 1.846 sum 9.053 -9.778 -6.384 14.775 Atomic orbital electron populations 1.70644 1.08490 1.32361 1.36111 1.28022 0.95713 1.06369 0.89886 0.83218 0.74605 0.71094 0.78738 1.18617 1.18991 1.21377 1.20219 0.95585 0.96007 1.44443 0.92601 1.17682 0.93122 0.93292 0.93357 1.20674 0.95934 1.04300 1.03394 1.20283 0.92909 0.99027 1.01638 1.20139 0.84201 1.02286 1.05721 1.98243 1.17934 1.98519 1.92129 1.20115 0.93879 1.02071 1.03198 1.17913 0.91690 0.93609 0.93543 1.44252 1.11813 1.32948 1.48734 1.21264 0.92907 0.89159 0.95658 1.21668 0.98363 0.96591 0.98230 1.22491 0.97563 0.96084 0.96434 1.23040 1.00591 0.97516 0.96764 1.22824 0.98195 0.96914 0.99441 1.22936 0.97806 0.99153 0.97459 0.91256 0.87138 0.85766 0.85813 0.77055 0.93134 0.93201 0.91797 0.91795 0.88707 0.90630 0.91347 0.89405 0.91004 0.90933 0.90331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.14 13.66 21.83 0.30 -45.85 16 2 C 0.01 0.68 5.42 85.24 0.46 1.14 16 3 Si 1.10 48.75 24.90 68.60 1.71 50.46 16 4 H -0.26 -10.73 6.44 99.48 0.64 -10.09 16 5 H -0.27 -11.73 7.02 99.48 0.70 -11.03 16 6 H -0.29 -12.30 7.11 99.48 0.71 -11.60 16 7 C -0.53 -27.86 8.81 23.36 0.21 -27.65 16 8 H 0.06 3.02 6.99 -2.91 -0.02 3.00 16 9 C 0.03 1.50 5.15 -21.16 -0.11 1.39 16 10 C -0.22 -10.37 7.21 22.46 0.16 -10.21 16 11 C -0.12 -4.95 9.74 22.04 0.21 -4.73 16 12 C -0.10 -3.84 6.33 22.49 0.14 -3.70 16 13 Cl -0.10 -3.25 28.94 -2.72 -0.08 -3.32 16 14 C -0.17 -6.81 9.07 22.39 0.20 -6.61 16 15 C 0.14 5.96 6.68 38.98 0.26 6.23 16 16 N -0.75 -28.50 5.63 -338.07 -1.90 -30.40 16 17 C 0.13 3.94 4.90 86.38 0.42 4.36 16 18 C -0.11 -2.63 5.15 30.59 0.16 -2.47 16 19 C -0.11 -2.03 3.64 -10.26 -0.04 -2.07 16 20 C -0.14 -2.54 7.65 31.18 0.24 -2.30 16 21 C -0.14 -2.04 8.09 31.18 0.25 -1.79 16 22 C -0.14 -2.25 7.65 31.12 0.24 -2.01 16 23 H 0.28 14.80 8.73 -92.71 -0.81 14.00 16 24 H 0.11 5.12 4.41 -2.91 -0.01 5.11 16 25 H 0.12 4.57 8.06 -2.91 -0.02 4.54 16 26 H 0.12 4.47 6.73 -2.91 -0.02 4.45 16 27 H 0.39 15.65 6.77 -92.71 -0.63 15.02 16 28 H 0.05 1.48 7.94 -2.39 -0.02 1.46 16 29 H 0.05 1.45 7.94 -2.39 -0.02 1.43 16 30 H 0.06 1.55 8.14 -2.38 -0.02 1.54 16 31 H 0.06 1.57 7.88 -2.39 -0.02 1.55 16 32 H 0.09 1.73 8.14 -2.39 -0.02 1.72 16 33 H 0.08 1.44 7.92 -2.39 -0.02 1.42 16 34 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 36 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.08 1.33 8.10 -2.39 -0.02 1.31 16 Total: -1.00 -54.51 319.48 3.16 -51.35 By element: Atomic # 1 Polarization: 27.85 SS G_CDS: 0.32 Total: 28.18 kcal Atomic # 6 Polarization: -53.23 SS G_CDS: 2.81 Total: -50.41 kcal Atomic # 7 Polarization: -74.64 SS G_CDS: -1.61 Total: -76.25 kcal Atomic # 14 Polarization: 48.75 SS G_CDS: 1.71 Total: 50.46 kcal Atomic # 17 Polarization: -3.25 SS G_CDS: -0.08 Total: -3.32 kcal Total: -54.51 3.16 -51.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168891002.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.575 kcal (2) G-P(sol) polarization free energy of solvation -54.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds