Wall clock time and date at job start Wed Apr 15 2020 11:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86797 * 120.00337 * 2 1 4 4 H 1.48500 * 109.47613 * 270.00700 * 3 2 1 5 5 H 1.48502 * 109.46915 * 30.01009 * 3 2 1 6 6 H 1.48506 * 109.46961 * 150.00409 * 3 2 1 7 7 C 1.39953 * 119.99991 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99854 * 195.96581 * 7 2 1 9 9 C 1.41393 * 119.99830 * 15.96582 * 7 2 1 10 10 C 1.40737 * 120.24716 * 25.38311 * 9 7 2 11 11 C 1.37596 * 119.74383 * 180.02562 * 10 9 7 12 12 C 1.38655 * 120.25152 * 359.97438 * 11 10 9 13 13 C 1.38606 * 120.50015 * 0.02562 * 12 11 10 14 14 C 1.37635 * 120.25022 * 0.02562 * 13 12 11 15 15 C 1.50703 * 120.13038 * 180.02562 * 14 13 12 16 16 N 1.46910 * 109.46830 * 106.88065 * 15 14 13 17 17 C 1.46844 * 110.99903 * 287.77712 * 16 15 14 18 18 C 1.53039 * 109.51982 * 174.16064 * 17 16 15 19 19 C 1.53119 * 109.27974 * 59.18577 * 18 17 16 20 20 C 1.53125 * 109.15682 * 302.34375 * 19 18 17 21 21 H 1.09004 * 109.50065 * 297.71322 * 20 19 18 22 22 Cl 1.80296 * 109.53406 * 177.61532 * 20 19 18 23 23 C 1.46849 * 110.99490 * 163.57003 * 16 15 14 24 24 H 0.97000 * 119.99551 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.12322 * 0.02562 * 10 9 7 26 26 H 1.08004 * 119.87140 * 180.25729 * 11 10 9 27 27 H 1.07998 * 119.74741 * 180.02562 * 12 11 10 28 28 H 1.07999 * 119.87358 * 179.97438 * 13 12 11 29 29 H 1.08996 * 109.47751 * 226.88030 * 15 14 13 30 30 H 1.09006 * 109.47149 * 346.88665 * 15 14 13 31 31 H 1.08998 * 109.46864 * 294.17750 * 17 16 15 32 32 H 1.08999 * 109.46076 * 54.14982 * 17 16 15 33 33 H 1.08996 * 109.50353 * 299.23829 * 18 17 16 34 34 H 1.09000 * 109.53432 * 179.13930 * 18 17 16 35 35 H 1.08996 * 109.52547 * 182.44280 * 19 18 17 36 36 H 1.09000 * 109.52633 * 62.24529 * 19 18 17 37 37 H 1.08999 * 109.46365 * 305.85525 * 23 16 15 38 38 H 1.09001 * 109.46234 * 65.83667 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4897 2.0465 -1.4000 5 1 1.4399 2.6526 0.7003 6 1 3.5399 1.4399 0.7000 7 6 2.0080 -1.2120 -0.0005 8 1 3.0567 -1.2302 0.2567 9 6 1.3419 -2.4127 -0.3379 10 6 0.1992 -2.3830 -1.1589 11 6 -0.4413 -3.5576 -1.4803 12 6 0.0354 -4.7675 -0.9990 13 6 1.1599 -4.8087 -0.1897 14 6 1.8159 -3.6461 0.1455 15 6 3.0387 -3.6942 1.0252 16 7 4.2356 -3.4330 0.2144 17 6 4.5440 -4.5775 -0.6524 18 6 5.7040 -4.2162 -1.5830 19 6 6.9289 -3.8436 -0.7431 20 6 6.5668 -2.6810 0.1853 21 1 6.2958 -1.8098 -0.4111 22 17 7.9812 -2.2799 1.2289 23 6 5.3818 -3.0868 1.0647 24 1 -0.4849 0.8401 0.0004 25 1 -0.1735 -1.4417 -1.5352 26 1 -1.3159 -3.5376 -2.1135 27 1 -0.4734 -5.6846 -1.2567 28 1 1.5222 -5.7566 0.1799 29 1 2.9556 -2.9369 1.8047 30 1 3.1182 -4.6801 1.4833 31 1 4.8242 -5.4333 -0.0382 32 1 3.6661 -4.8294 -1.2473 33 1 5.4194 -3.3692 -2.2073 34 1 5.9432 -5.0707 -2.2161 35 1 7.7443 -3.5438 -1.4012 36 1 7.2373 -4.7029 -0.1476 37 1 5.1123 -2.2562 1.7170 38 1 5.6581 -3.9497 1.6707 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235526972.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:49 Heat of formation + Delta-G solvation = -2.689086 kcal Electronic energy + Delta-G solvation = -19956.771316 eV Core-core repulsion = 17016.600958 eV Total energy + Delta-G solvation = -2940.170358 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.93270 -37.35738 -35.67495 -33.59563 -33.30232 -30.48639 -29.89118 -29.31034 -25.93386 -24.82328 -22.81444 -22.43934 -20.90400 -19.62446 -19.41089 -17.10622 -15.87174 -15.32994 -14.97189 -14.64016 -14.43738 -14.13545 -13.87865 -13.35715 -13.24281 -13.08558 -12.57411 -12.34636 -11.73953 -11.64903 -11.50796 -11.27922 -11.09132 -11.04200 -10.83941 -10.66424 -10.58738 -10.51755 -10.32427 -10.12641 -10.03033 -9.49107 -9.27782 -9.12985 -7.76199 -7.33619 -7.28052 -6.69618 -4.27594 2.28681 2.81508 2.99778 3.11314 3.14961 3.28917 3.98113 4.44772 4.68724 4.72124 4.85889 5.08535 5.29552 5.39127 5.64046 5.73583 5.77682 5.78701 5.90244 5.99624 6.01022 6.06723 6.22812 6.27605 6.35373 6.45807 6.51536 6.53347 6.85627 7.14624 7.31350 7.41121 7.57013 7.59189 7.70777 7.97062 8.12616 8.19257 8.36893 8.73387 8.99498 9.06219 10.24569 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.014113 B = 0.007085 C = 0.005119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.571458 B = 3951.205516 C = 5468.470376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.072 3.928 3 Si 0.903 3.097 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.261 1.261 7 C -0.443 4.443 8 H 0.092 0.908 9 C 0.132 3.868 10 C -0.164 4.164 11 C -0.107 4.107 12 C -0.247 4.247 13 C -0.087 4.087 14 C -0.196 4.196 15 C 0.131 3.869 16 N -0.519 5.519 17 C 0.056 3.944 18 C -0.115 4.115 19 C -0.121 4.121 20 C 0.010 3.990 21 H 0.110 0.890 22 Cl -0.198 7.198 23 C 0.053 3.947 24 H 0.278 0.722 25 H 0.117 0.883 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.018 0.982 31 H 0.024 0.976 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.832 -4.339 -0.435 10.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.185 1.185 7 C -0.472 4.472 8 H 0.110 0.890 9 C 0.129 3.871 10 C -0.184 4.184 11 C -0.125 4.125 12 C -0.266 4.266 13 C -0.105 4.105 14 C -0.198 4.198 15 C 0.005 3.995 16 N -0.244 5.244 17 C -0.072 4.072 18 C -0.153 4.153 19 C -0.159 4.159 20 C -0.034 4.034 21 H 0.128 0.872 22 Cl -0.172 7.172 23 C -0.075 4.075 24 H 0.089 0.911 25 H 0.135 0.865 26 H 0.102 0.898 27 H 0.101 0.899 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.036 0.964 31 H 0.042 0.958 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.103 0.897 38 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 9.649 -3.733 -0.615 10.364 hybrid contribution 0.435 0.129 0.554 0.716 sum 10.084 -3.605 -0.061 10.709 Atomic orbital electron populations 1.69837 1.07580 1.28948 1.35951 1.25982 0.94649 1.01329 0.92506 0.86390 0.80631 0.80928 0.79245 1.19452 1.20625 1.18500 1.19776 0.98052 0.90265 1.39142 0.88992 1.17361 0.90382 0.91548 0.87851 1.21384 0.99057 0.96609 1.01306 1.20675 0.98507 0.93512 0.99829 1.20273 1.01482 0.96082 1.08790 1.20357 0.96191 0.95597 0.98399 1.19416 0.99701 0.93665 1.06975 1.20586 0.87157 0.97721 0.94046 1.61905 1.02529 1.37968 1.21989 1.22084 0.98524 0.91053 0.95576 1.21606 0.93816 1.02073 0.97850 1.21922 0.98848 0.97177 0.97910 1.24223 0.85499 1.01007 0.92682 0.87213 1.98697 1.50029 1.95274 1.73192 1.22315 0.90053 1.00749 0.94391 0.91118 0.86512 0.89806 0.89921 0.90035 0.90751 0.96396 0.95833 0.89595 0.90507 0.91212 0.91079 0.91406 0.89732 0.94702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.32 10.91 55.55 0.61 -19.72 16 2 C 0.07 1.77 5.17 -17.34 -0.09 1.68 16 3 Si 0.90 18.63 29.59 -169.99 -5.03 13.60 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.26 -5.33 7.11 56.52 0.40 -4.92 16 7 C -0.44 -11.12 8.24 -37.74 -0.31 -11.43 16 8 H 0.09 2.24 6.55 -52.49 -0.34 1.90 16 9 C 0.13 3.33 5.57 -106.82 -0.60 2.74 16 10 C -0.16 -4.20 8.69 -38.87 -0.34 -4.54 16 11 C -0.11 -2.50 10.02 -39.66 -0.40 -2.89 16 12 C -0.25 -5.47 10.05 -39.29 -0.39 -5.87 16 13 C -0.09 -1.88 9.13 -39.67 -0.36 -2.24 16 14 C -0.20 -4.43 4.70 -103.91 -0.49 -4.91 16 15 C 0.13 2.54 4.30 -4.97 -0.02 2.51 16 16 N -0.52 -9.02 3.78 -236.10 -0.89 -9.91 16 17 C 0.06 0.86 5.30 -3.83 -0.02 0.84 16 18 C -0.12 -1.48 6.09 -26.65 -0.16 -1.64 16 19 C -0.12 -1.43 5.41 -26.60 -0.14 -1.57 16 20 C 0.01 0.13 3.38 -26.65 -0.09 0.04 16 21 H 0.11 1.57 8.14 -51.93 -0.42 1.14 16 22 Cl -0.20 -2.63 28.62 -51.86 -1.48 -4.12 16 23 C 0.05 0.80 4.85 -3.83 -0.02 0.79 16 24 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 25 H 0.12 3.11 6.16 -52.49 -0.32 2.79 16 26 H 0.08 1.78 8.06 -52.48 -0.42 1.35 16 27 H 0.08 1.64 8.06 -52.49 -0.42 1.22 16 28 H 0.08 1.57 7.98 -52.49 -0.42 1.16 16 29 H 0.07 1.51 7.44 -51.93 -0.39 1.12 16 30 H 0.02 0.32 7.84 -51.93 -0.41 -0.08 16 31 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 1.49 6.94 -51.93 -0.36 1.13 16 33 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 1.34 7.95 -51.93 -0.41 0.93 16 38 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 317.39 15.07 4.78 4.78 Total: -1.00 -25.68 317.39 -11.04 -36.72 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -5.59 Total: 5.14 kcal Atomic # 6 Polarization: -23.07 SS G_CDS: -3.43 Total: -26.50 kcal Atomic # 7 Polarization: -29.34 SS G_CDS: -0.29 Total: -29.63 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Atomic # 17 Polarization: -2.63 SS G_CDS: -1.48 Total: -4.12 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -25.68 -11.04 -36.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235526972.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.033 kcal (2) G-P(sol) polarization free energy of solvation -25.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds