Wall clock time and date at job start Wed Apr 15 2020 11:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86797 * 120.00337 * 2 1 4 4 H 1.48500 * 109.47613 * 270.00700 * 3 2 1 5 5 H 1.48502 * 109.46915 * 30.01009 * 3 2 1 6 6 H 1.48506 * 109.46961 * 150.00409 * 3 2 1 7 7 C 1.39953 * 119.99991 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99854 * 195.96581 * 7 2 1 9 9 C 1.41393 * 119.99830 * 15.96582 * 7 2 1 10 10 C 1.40737 * 120.24716 * 25.38311 * 9 7 2 11 11 C 1.37596 * 119.74383 * 180.02562 * 10 9 7 12 12 C 1.38655 * 120.25152 * 359.97438 * 11 10 9 13 13 C 1.38606 * 120.50015 * 0.02562 * 12 11 10 14 14 C 1.37635 * 120.25022 * 0.02562 * 13 12 11 15 15 C 1.50703 * 120.13038 * 180.02562 * 14 13 12 16 16 N 1.46910 * 109.46830 * 106.88065 * 15 14 13 17 17 C 1.46844 * 110.99903 * 287.77712 * 16 15 14 18 18 C 1.53039 * 109.51982 * 174.16064 * 17 16 15 19 19 C 1.53119 * 109.27974 * 59.18577 * 18 17 16 20 20 C 1.53125 * 109.15682 * 302.34375 * 19 18 17 21 21 H 1.09004 * 109.50065 * 297.71322 * 20 19 18 22 22 Cl 1.80296 * 109.53406 * 177.61532 * 20 19 18 23 23 C 1.46849 * 110.99490 * 163.57003 * 16 15 14 24 24 H 0.97000 * 119.99551 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.12322 * 0.02562 * 10 9 7 26 26 H 1.08004 * 119.87140 * 180.25729 * 11 10 9 27 27 H 1.07998 * 119.74741 * 180.02562 * 12 11 10 28 28 H 1.07999 * 119.87358 * 179.97438 * 13 12 11 29 29 H 1.08996 * 109.47751 * 226.88030 * 15 14 13 30 30 H 1.09006 * 109.47149 * 346.88665 * 15 14 13 31 31 H 1.08998 * 109.46864 * 294.17750 * 17 16 15 32 32 H 1.08999 * 109.46076 * 54.14982 * 17 16 15 33 33 H 1.08996 * 109.50353 * 299.23829 * 18 17 16 34 34 H 1.09000 * 109.53432 * 179.13930 * 18 17 16 35 35 H 1.08996 * 109.52547 * 182.44280 * 19 18 17 36 36 H 1.09000 * 109.52633 * 62.24529 * 19 18 17 37 37 H 1.08999 * 109.46365 * 305.85525 * 23 16 15 38 38 H 1.09001 * 109.46234 * 65.83667 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4897 2.0465 -1.4000 5 1 1.4399 2.6526 0.7003 6 1 3.5399 1.4399 0.7000 7 6 2.0080 -1.2120 -0.0005 8 1 3.0567 -1.2302 0.2567 9 6 1.3419 -2.4127 -0.3379 10 6 0.1992 -2.3830 -1.1589 11 6 -0.4413 -3.5576 -1.4803 12 6 0.0354 -4.7675 -0.9990 13 6 1.1599 -4.8087 -0.1897 14 6 1.8159 -3.6461 0.1455 15 6 3.0387 -3.6942 1.0252 16 7 4.2356 -3.4330 0.2144 17 6 4.5440 -4.5775 -0.6524 18 6 5.7040 -4.2162 -1.5830 19 6 6.9289 -3.8436 -0.7431 20 6 6.5668 -2.6810 0.1853 21 1 6.2958 -1.8098 -0.4111 22 17 7.9812 -2.2799 1.2289 23 6 5.3818 -3.0868 1.0647 24 1 -0.4849 0.8401 0.0004 25 1 -0.1735 -1.4417 -1.5352 26 1 -1.3159 -3.5376 -2.1135 27 1 -0.4734 -5.6846 -1.2567 28 1 1.5222 -5.7566 0.1799 29 1 2.9556 -2.9369 1.8047 30 1 3.1182 -4.6801 1.4833 31 1 4.8242 -5.4333 -0.0382 32 1 3.6661 -4.8294 -1.2473 33 1 5.4194 -3.3692 -2.2073 34 1 5.9432 -5.0707 -2.2161 35 1 7.7443 -3.5438 -1.4012 36 1 7.2373 -4.7029 -0.1476 37 1 5.1123 -2.2562 1.7170 38 1 5.6581 -3.9497 1.6707 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235526972.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:48 Heat of formation + Delta-G solvation = -13.790469 kcal Electronic energy + Delta-G solvation = -19957.252708 eV Core-core repulsion = 17016.600958 eV Total energy + Delta-G solvation = -2940.651750 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.29795 -38.97033 -36.79610 -35.42667 -34.60826 -31.81358 -31.46899 -30.99951 -27.56966 -26.47797 -23.97084 -23.78813 -22.72602 -21.16793 -20.71089 -18.95384 -17.29606 -16.87568 -16.41619 -16.13722 -15.74725 -15.59935 -15.19264 -14.79815 -14.72061 -14.38326 -14.31440 -13.51929 -13.34396 -13.28667 -12.91809 -12.78350 -12.71254 -12.51543 -12.33907 -12.14100 -11.97460 -11.78965 -11.62536 -11.34361 -11.25733 -11.13158 -10.99929 -10.94668 -9.19616 -9.15549 -9.02304 -8.52563 -6.17738 1.01889 1.13660 1.28706 1.41040 1.52032 1.57772 2.25306 2.83763 3.17993 3.63830 3.75048 3.92743 4.02993 4.16362 4.25723 4.37552 4.47774 4.57224 4.60232 4.67038 4.70213 4.79852 4.82834 4.89565 5.01854 5.05167 5.14475 5.21090 5.30193 5.40609 5.46123 5.60601 5.85209 6.07304 6.18427 6.29245 6.34280 6.37332 6.54107 6.86023 7.12585 7.20294 8.43575 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.014113 B = 0.007085 C = 0.005119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.571458 B = 3951.205516 C = 5468.470376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.032 3.968 3 Si 0.968 3.032 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.257 1.257 7 C -0.464 4.464 8 H 0.092 0.908 9 C 0.102 3.898 10 C -0.195 4.195 11 C -0.116 4.116 12 C -0.246 4.246 13 C -0.090 4.090 14 C -0.194 4.194 15 C 0.138 3.862 16 N -0.535 5.535 17 C 0.056 3.944 18 C -0.109 4.109 19 C -0.112 4.112 20 C 0.013 3.987 21 H 0.099 0.901 22 Cl -0.193 7.193 23 C 0.057 3.943 24 H 0.282 0.718 25 H 0.095 0.905 26 H 0.100 0.900 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.058 0.942 30 H 0.034 0.966 31 H 0.038 0.962 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.603 -5.573 -0.411 12.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.182 4.182 3 Si 0.790 3.210 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.180 1.180 7 C -0.494 4.494 8 H 0.110 0.890 9 C 0.100 3.900 10 C -0.215 4.215 11 C -0.134 4.134 12 C -0.265 4.265 13 C -0.109 4.109 14 C -0.196 4.196 15 C 0.012 3.988 16 N -0.260 5.260 17 C -0.071 4.071 18 C -0.147 4.147 19 C -0.150 4.150 20 C -0.031 4.031 21 H 0.117 0.883 22 Cl -0.167 7.167 23 C -0.071 4.071 24 H 0.092 0.908 25 H 0.113 0.887 26 H 0.118 0.882 27 H 0.129 0.871 28 H 0.129 0.871 29 H 0.076 0.924 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.113 0.887 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 11.428 -4.981 -0.594 12.480 hybrid contribution -0.140 0.380 0.553 0.685 sum 11.288 -4.601 -0.041 12.190 Atomic orbital electron populations 1.69910 1.08906 1.29855 1.37262 1.26715 0.95282 1.04270 0.91906 0.85406 0.79401 0.77005 0.79168 1.19259 1.20043 1.18023 1.19918 0.98113 0.91046 1.40294 0.89028 1.17700 0.90879 0.92923 0.88534 1.21354 1.00474 0.96647 1.03008 1.20920 0.98973 0.93466 1.00072 1.20646 1.01419 0.96547 1.07863 1.20699 0.95798 0.96510 0.97898 1.19791 1.00507 0.93121 1.06220 1.20418 0.87134 0.98027 0.93248 1.61759 1.02690 1.39223 1.22359 1.22103 0.98656 0.90865 0.95523 1.21568 0.93187 1.02483 0.97476 1.21884 0.98732 0.96691 0.97689 1.24132 0.85100 1.01376 0.92462 0.88288 1.98700 1.49521 1.95309 1.73162 1.22272 0.89835 1.00633 0.94356 0.90768 0.88669 0.88173 0.87126 0.87086 0.92371 0.94742 0.94418 0.91825 0.92034 0.88724 0.89361 0.90345 0.91095 0.93623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.95 10.91 21.83 0.24 -43.72 16 2 C 0.03 1.60 5.17 85.26 0.44 2.04 16 3 Si 0.97 38.94 29.59 68.60 2.03 40.97 16 4 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 5 H -0.28 -10.73 7.11 99.48 0.71 -10.02 16 6 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 7 C -0.46 -23.98 8.24 23.46 0.19 -23.79 16 8 H 0.09 4.58 6.55 -2.91 -0.02 4.57 16 9 C 0.10 5.31 5.57 -21.29 -0.12 5.20 16 10 C -0.20 -10.31 8.69 22.73 0.20 -10.12 16 11 C -0.12 -5.44 10.02 22.22 0.22 -5.21 16 12 C -0.25 -10.50 10.05 22.46 0.23 -10.28 16 13 C -0.09 -3.78 9.13 22.22 0.20 -3.58 16 14 C -0.19 -8.77 4.70 -19.40 -0.09 -8.86 16 15 C 0.14 5.29 4.30 85.56 0.37 5.65 16 16 N -0.54 -18.14 3.78 -900.89 -3.41 -21.55 16 17 C 0.06 1.63 5.30 86.33 0.46 2.09 16 18 C -0.11 -2.55 6.09 30.65 0.19 -2.36 16 19 C -0.11 -2.33 5.41 30.68 0.17 -2.17 16 20 C 0.01 0.34 3.38 30.65 0.10 0.44 16 21 H 0.10 2.73 8.14 -2.38 -0.02 2.71 16 22 Cl -0.19 -4.74 28.62 -2.72 -0.08 -4.82 16 23 C 0.06 1.65 4.85 86.33 0.42 2.07 16 24 H 0.28 13.68 8.30 -92.71 -0.77 12.91 16 25 H 0.10 5.35 6.16 -2.91 -0.02 5.33 16 26 H 0.10 4.23 8.06 -2.91 -0.02 4.21 16 27 H 0.11 4.07 8.06 -2.91 -0.02 4.05 16 28 H 0.11 3.95 7.98 -2.91 -0.02 3.93 16 29 H 0.06 2.39 7.44 -2.39 -0.02 2.37 16 30 H 0.03 1.18 7.84 -2.38 -0.02 1.17 16 31 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.06 2.13 6.94 -2.39 -0.02 2.11 16 33 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.07 2.23 7.95 -2.39 -0.02 2.21 16 38 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -55.85 317.39 2.79 -53.05 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: 1.04 Total: 24.94 kcal Atomic # 6 Polarization: -51.85 SS G_CDS: 2.97 Total: -48.88 kcal Atomic # 7 Polarization: -62.09 SS G_CDS: -3.17 Total: -65.26 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.97 kcal Atomic # 17 Polarization: -4.74 SS G_CDS: -0.08 Total: -4.82 kcal Total: -55.85 2.79 -53.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235526972.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.264 kcal (2) G-P(sol) polarization free energy of solvation -55.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds