Wall clock time and date at job start Wed Apr 15 2020 11:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.40373 * 120.48031 * 5.47053 * 3 2 1 5 5 C 1.36900 * 118.48511 * 180.02562 * 4 3 2 6 6 C 1.39440 * 119.38266 * 359.97438 * 5 4 3 7 7 N 1.38438 * 119.53572 * 180.02562 * 6 5 4 8 8 C 1.36847 * 119.99907 * 171.79718 * 7 6 5 9 9 H 1.07998 * 119.99928 * 33.80077 * 8 7 6 10 10 C 1.38875 * 119.99905 * 213.80976 * 8 7 6 11 11 N 1.31521 * 120.00092 * 23.07095 * 10 8 7 12 12 Si 1.86801 * 119.99861 * 203.06744 * 10 8 7 13 13 H 1.48492 * 109.47045 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.46916 * 120.00371 * 12 10 8 15 15 H 1.48504 * 109.47217 * 239.99813 * 12 10 8 16 16 C 1.46500 * 120.00195 * 351.79234 * 7 6 5 17 17 C 1.50701 * 109.47280 * 270.00055 * 16 7 6 18 18 C 1.38235 * 119.99794 * 269.72908 * 17 16 7 19 19 C 1.38239 * 119.99450 * 179.76422 * 18 17 16 20 20 C 1.38237 * 119.99883 * 0.50944 * 19 18 17 21 21 C 1.38230 * 120.00211 * 359.74595 * 20 19 18 22 22 C 1.38231 * 119.99539 * 89.99939 * 17 16 7 23 23 N 1.32670 * 120.92444 * 0.27650 * 6 5 4 24 24 C 1.31633 * 121.64164 * 359.43338 * 23 6 5 25 25 H 1.07992 * 120.75419 * 359.97438 * 4 3 2 26 26 H 1.08002 * 120.30381 * 180.02562 * 5 4 3 27 27 H 0.96998 * 119.99850 * 179.97438 * 11 10 8 28 28 H 1.09001 * 109.47064 * 30.00498 * 16 7 6 29 29 H 1.09000 * 109.46807 * 150.00009 * 16 7 6 30 30 H 1.07998 * 120.00112 * 359.97438 * 18 17 16 31 31 H 1.08002 * 119.99563 * 180.22359 * 19 18 17 32 32 H 1.08000 * 119.99545 * 179.72403 * 20 19 18 33 33 H 1.08000 * 120.00093 * 179.97438 * 21 20 19 34 34 H 1.07996 * 120.00913 * 0.02562 * 22 17 16 35 35 H 1.07997 * 119.74112 * 180.28222 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2806 -1.2033 -0.1153 5 6 4.6487 -1.1553 -0.1102 6 6 5.2896 0.0775 0.0078 7 7 6.6730 0.1298 0.0127 8 6 7.3122 1.3386 -0.0414 9 1 6.8744 2.2027 0.4360 10 6 8.5237 1.4540 -0.7104 11 7 8.8424 0.5883 -1.6479 12 14 9.7007 2.8389 -0.2788 13 1 9.1118 3.6703 0.8015 14 1 10.9900 2.2663 0.1849 15 1 9.9362 3.6806 -1.4794 16 6 7.4526 -1.1089 0.0760 17 6 7.7123 -1.4660 1.5169 18 6 8.8478 -0.9977 2.1511 19 6 9.0835 -1.3212 3.4743 20 6 8.1891 -2.1217 4.1600 21 6 7.0563 -2.5943 3.5242 22 6 6.8179 -2.2664 2.2026 23 7 4.5922 1.2005 0.1203 24 6 3.2759 1.1994 0.1143 25 1 2.7613 -2.1459 -0.2052 26 1 5.2262 -2.0637 -0.1977 27 1 9.6884 0.6692 -2.1154 28 1 6.8953 -1.9139 -0.4031 29 1 8.4022 -0.9673 -0.4400 30 1 9.5490 -0.3763 1.6140 31 1 9.9688 -0.9524 3.9709 32 1 8.3755 -2.3781 5.1924 33 1 6.3578 -3.2200 4.0598 34 1 5.9332 -2.6362 1.7057 35 1 2.7390 2.1323 0.2033 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166993191.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:47 Heat of formation + Delta-G solvation = 106.355690 kcal Electronic energy + Delta-G solvation = -20532.755823 eV Core-core repulsion = 17496.206508 eV Total energy + Delta-G solvation = -3036.549315 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.69364 -38.70583 -36.56193 -35.52875 -32.53588 -31.96238 -31.09877 -30.51740 -29.22849 -26.38551 -24.83835 -22.81488 -22.18185 -21.89873 -20.68084 -18.14806 -17.84149 -16.87402 -16.12886 -15.51389 -15.08035 -14.78033 -14.61799 -14.00049 -13.81804 -13.56740 -13.16413 -13.11311 -13.00784 -12.44960 -12.34006 -12.26810 -12.16741 -11.73534 -11.46819 -11.36731 -11.21359 -11.10723 -10.61480 -10.50828 -10.43686 -9.67850 -9.15132 -8.74522 -8.55835 -8.49951 -8.38080 -7.11290 -6.63087 -4.12565 1.58022 1.74954 1.77334 2.20194 2.98450 3.08507 3.14572 3.32625 3.71915 3.80234 4.08286 4.49715 4.58075 4.81373 4.88789 5.19276 5.24297 5.33311 5.40257 5.49099 5.53534 5.74208 5.86089 5.93215 6.05349 6.09833 6.32829 6.40805 6.49294 6.70552 6.75048 6.80462 6.83339 6.87479 7.08347 7.17687 7.31842 7.39960 7.77400 8.17569 8.26417 8.75913 9.03110 9.38442 10.28832 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.013004 B = 0.006909 C = 0.004983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.657511 B = 4051.752294 C = 5617.327220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C 0.289 3.711 3 C -0.239 4.239 4 C 0.013 3.987 5 C -0.268 4.268 6 C 0.381 3.619 7 N -0.383 5.383 8 C -0.292 4.292 9 H 0.109 0.891 10 C 0.035 3.965 11 N -0.853 5.853 12 Si 0.919 3.081 13 H -0.263 1.263 14 H -0.276 1.276 15 H -0.278 1.278 16 C 0.134 3.866 17 C -0.086 4.086 18 C -0.091 4.091 19 C -0.128 4.128 20 C -0.128 4.128 21 C -0.128 4.128 22 C -0.110 4.110 23 N -0.539 5.539 24 C 0.220 3.780 25 H 0.119 0.881 26 H 0.124 0.876 27 H 0.275 0.725 28 H 0.070 0.930 29 H 0.129 0.871 30 H 0.122 0.878 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.120 0.880 35 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.888 -5.201 5.800 8.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.167 5.167 2 C -0.023 4.023 3 C -0.252 4.252 4 C -0.013 4.013 5 C -0.294 4.294 6 C 0.139 3.861 7 N -0.066 5.066 8 C -0.421 4.421 9 H 0.126 0.874 10 C -0.171 4.171 11 N -0.487 5.487 12 Si 0.744 3.256 13 H -0.187 1.187 14 H -0.202 1.202 15 H -0.204 1.204 16 C 0.011 3.989 17 C -0.087 4.087 18 C -0.110 4.110 19 C -0.146 4.146 20 C -0.147 4.147 21 C -0.146 4.146 22 C -0.129 4.129 23 N -0.257 5.257 24 C 0.049 3.951 25 H 0.137 0.863 26 H 0.141 0.859 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.147 0.853 30 H 0.140 0.860 31 H 0.134 0.866 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.138 0.862 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.259 -4.503 5.699 7.607 hybrid contribution 0.584 -0.196 0.066 0.619 sum 2.843 -4.699 5.765 7.962 Atomic orbital electron populations 1.81140 1.12456 1.08657 1.14400 1.25706 0.92489 0.92613 0.91450 1.16317 0.84415 0.96287 1.28176 1.20604 0.93155 0.95958 0.91622 1.20844 0.94450 0.97841 1.16246 1.18677 0.86010 0.88755 0.92640 1.42589 0.99802 1.06279 1.57891 1.19810 1.02771 0.87950 1.31539 0.87394 1.25457 0.99141 0.98813 0.93732 1.69926 1.23471 1.37085 1.18216 0.85970 0.79693 0.80724 0.79211 1.18664 1.20191 1.20361 1.20859 1.00812 0.86006 0.91266 1.20460 0.94374 0.96304 0.97545 1.21112 0.97306 0.98142 0.94439 1.21103 0.99535 0.99111 0.94864 1.21029 0.95245 0.98994 0.99394 1.21046 0.97612 1.00872 0.95054 1.21179 0.98743 0.98345 0.94586 1.67339 1.06678 1.29057 1.22582 1.22336 0.89019 0.95381 0.88376 0.86301 0.85865 0.91480 0.91181 0.85331 0.86046 0.86635 0.86825 0.86665 0.86184 0.83791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -9.14 18.54 41.84 0.78 -8.37 16 2 C 0.29 5.04 15.37 -22.47 -0.35 4.69 16 3 C -0.24 -4.09 5.76 -106.63 -0.61 -4.70 16 4 C 0.01 0.22 9.85 -39.26 -0.39 -0.17 16 5 C -0.27 -4.77 8.52 -39.62 -0.34 -5.11 16 6 C 0.38 8.02 7.30 -155.22 -1.13 6.88 16 7 N -0.38 -8.40 2.62 -116.34 -0.30 -8.70 16 8 C -0.29 -6.91 9.03 -15.08 -0.14 -7.04 16 9 H 0.11 2.69 7.58 -52.49 -0.40 2.29 16 10 C 0.04 0.80 4.95 -17.45 -0.09 0.72 16 11 N -0.85 -19.98 11.30 55.49 0.63 -19.36 16 12 Si 0.92 18.14 29.61 -169.99 -5.03 13.10 16 13 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 14 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 15 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 16 C 0.13 2.60 5.02 -5.19 -0.03 2.57 16 17 C -0.09 -1.50 5.46 -104.63 -0.57 -2.08 16 18 C -0.09 -1.56 9.70 -39.58 -0.38 -1.94 16 19 C -0.13 -1.88 10.05 -39.58 -0.40 -2.28 16 20 C -0.13 -1.75 10.05 -39.58 -0.40 -2.15 16 21 C -0.13 -1.80 10.05 -39.58 -0.40 -2.19 16 22 C -0.11 -1.73 9.62 -39.58 -0.38 -2.11 16 23 N -0.54 -11.44 9.30 -12.10 -0.11 -11.55 16 24 C 0.22 3.97 10.92 -17.10 -0.19 3.79 16 25 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 26 H 0.12 1.98 5.10 -52.49 -0.27 1.71 16 27 H 0.27 6.07 8.31 -40.82 -0.34 5.73 16 28 H 0.07 1.25 5.80 -51.93 -0.30 0.94 16 29 H 0.13 2.73 5.25 -51.93 -0.27 2.45 16 30 H 0.12 2.14 8.06 -52.49 -0.42 1.72 16 31 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 32 H 0.11 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 34 H 0.12 1.75 6.50 -52.49 -0.34 1.40 16 35 H 0.14 2.21 8.06 -52.49 -0.42 1.78 16 LS Contribution 311.20 15.07 4.69 4.69 Total: -1.00 -25.89 311.20 -8.39 -34.28 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -3.25 Total: 7.03 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -5.78 Total: -11.12 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: 0.99 Total: -47.98 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.03 Total: 13.10 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -25.89 -8.39 -34.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166993191.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.632 kcal (2) G-P(sol) polarization free energy of solvation -25.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds