Wall clock time and date at job start Wed Apr 15 2020 11:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.40373 * 120.48031 * 5.47053 * 3 2 1 5 5 C 1.36900 * 118.48511 * 180.02562 * 4 3 2 6 6 C 1.39440 * 119.38266 * 359.97438 * 5 4 3 7 7 N 1.38438 * 119.53572 * 180.02562 * 6 5 4 8 8 C 1.36847 * 119.99907 * 171.79718 * 7 6 5 9 9 H 1.07998 * 119.99928 * 33.80077 * 8 7 6 10 10 C 1.38875 * 119.99905 * 213.80976 * 8 7 6 11 11 N 1.31521 * 120.00092 * 23.07095 * 10 8 7 12 12 Si 1.86801 * 119.99861 * 203.06744 * 10 8 7 13 13 H 1.48492 * 109.47045 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.46916 * 120.00371 * 12 10 8 15 15 H 1.48504 * 109.47217 * 239.99813 * 12 10 8 16 16 C 1.46500 * 120.00195 * 351.79234 * 7 6 5 17 17 C 1.50701 * 109.47280 * 270.00055 * 16 7 6 18 18 C 1.38235 * 119.99794 * 269.72908 * 17 16 7 19 19 C 1.38239 * 119.99450 * 179.76422 * 18 17 16 20 20 C 1.38237 * 119.99883 * 0.50944 * 19 18 17 21 21 C 1.38230 * 120.00211 * 359.74595 * 20 19 18 22 22 C 1.38231 * 119.99539 * 89.99939 * 17 16 7 23 23 N 1.32670 * 120.92444 * 0.27650 * 6 5 4 24 24 C 1.31633 * 121.64164 * 359.43338 * 23 6 5 25 25 H 1.07992 * 120.75419 * 359.97438 * 4 3 2 26 26 H 1.08002 * 120.30381 * 180.02562 * 5 4 3 27 27 H 0.96998 * 119.99850 * 179.97438 * 11 10 8 28 28 H 1.09001 * 109.47064 * 30.00498 * 16 7 6 29 29 H 1.09000 * 109.46807 * 150.00009 * 16 7 6 30 30 H 1.07998 * 120.00112 * 359.97438 * 18 17 16 31 31 H 1.08002 * 119.99563 * 180.22359 * 19 18 17 32 32 H 1.08000 * 119.99545 * 179.72403 * 20 19 18 33 33 H 1.08000 * 120.00093 * 179.97438 * 21 20 19 34 34 H 1.07996 * 120.00913 * 0.02562 * 22 17 16 35 35 H 1.07997 * 119.74112 * 180.28222 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2806 -1.2033 -0.1153 5 6 4.6487 -1.1553 -0.1102 6 6 5.2896 0.0775 0.0078 7 7 6.6730 0.1298 0.0127 8 6 7.3122 1.3386 -0.0414 9 1 6.8744 2.2027 0.4360 10 6 8.5237 1.4540 -0.7104 11 7 8.8424 0.5883 -1.6479 12 14 9.7007 2.8389 -0.2788 13 1 9.1118 3.6703 0.8015 14 1 10.9900 2.2663 0.1849 15 1 9.9362 3.6806 -1.4794 16 6 7.4526 -1.1089 0.0760 17 6 7.7123 -1.4660 1.5169 18 6 8.8478 -0.9977 2.1511 19 6 9.0835 -1.3212 3.4743 20 6 8.1891 -2.1217 4.1600 21 6 7.0563 -2.5943 3.5242 22 6 6.8179 -2.2664 2.2026 23 7 4.5922 1.2005 0.1203 24 6 3.2759 1.1994 0.1143 25 1 2.7613 -2.1459 -0.2052 26 1 5.2262 -2.0637 -0.1977 27 1 9.6884 0.6692 -2.1154 28 1 6.8953 -1.9139 -0.4031 29 1 8.4022 -0.9673 -0.4400 30 1 9.5490 -0.3763 1.6140 31 1 9.9688 -0.9524 3.9709 32 1 8.3755 -2.3781 5.1924 33 1 6.3578 -3.2200 4.0598 34 1 5.9332 -2.6362 1.7057 35 1 2.7390 2.1323 0.2033 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166993191.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:46 Heat of formation + Delta-G solvation = 96.193569 kcal Electronic energy + Delta-G solvation = -20533.196486 eV Core-core repulsion = 17496.206508 eV Total energy + Delta-G solvation = -3036.989978 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.15264 -39.95770 -38.02629 -37.02083 -34.14986 -33.41337 -32.41212 -31.68189 -30.72866 -27.85277 -26.37288 -24.22378 -23.51038 -23.22677 -21.96882 -19.60979 -19.42283 -18.28571 -17.38301 -17.10744 -16.55624 -16.09558 -15.87539 -15.47557 -15.21457 -15.04931 -14.60337 -14.48308 -14.16544 -13.84920 -13.72095 -13.65685 -13.59878 -13.22605 -13.01229 -12.80186 -12.74660 -12.48615 -12.12117 -11.92994 -11.72110 -11.21945 -10.60829 -10.34153 -9.98888 -9.71952 -9.59559 -8.72287 -8.26072 -5.87050 0.17411 0.52799 0.60119 0.78306 1.39837 1.44394 1.55797 1.88675 2.22152 2.27856 2.70982 2.92876 3.15439 3.34808 3.39522 3.89988 4.07920 4.11307 4.18847 4.25282 4.36304 4.37496 4.53379 4.62852 4.74673 4.85558 5.09682 5.14222 5.22619 5.28469 5.31551 5.43187 5.50270 5.66181 5.68261 5.76887 5.91503 6.18037 6.23601 6.55195 6.75659 7.12267 7.45264 7.80770 8.61351 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.013004 B = 0.006909 C = 0.004983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.657511 B = 4051.752294 C = 5617.327220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C 0.307 3.693 3 C -0.224 4.224 4 C 0.026 3.974 5 C -0.269 4.269 6 C 0.371 3.629 7 N -0.406 5.406 8 C -0.310 4.310 9 H 0.084 0.916 10 C 0.006 3.994 11 N -0.880 5.880 12 Si 0.969 3.031 13 H -0.268 1.268 14 H -0.268 1.268 15 H -0.281 1.281 16 C 0.141 3.859 17 C -0.104 4.104 18 C -0.115 4.115 19 C -0.131 4.131 20 C -0.124 4.124 21 C -0.127 4.127 22 C -0.119 4.119 23 N -0.576 5.576 24 C 0.214 3.786 25 H 0.157 0.843 26 H 0.141 0.859 27 H 0.275 0.725 28 H 0.079 0.921 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.137 0.863 32 H 0.148 0.852 33 H 0.146 0.854 34 H 0.130 0.870 35 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.579 -6.648 7.340 10.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.181 5.181 2 C -0.005 4.005 3 C -0.237 4.237 4 C -0.001 4.001 5 C -0.295 4.295 6 C 0.130 3.870 7 N -0.091 5.091 8 C -0.439 4.439 9 H 0.102 0.898 10 C -0.197 4.197 11 N -0.516 5.516 12 Si 0.793 3.207 13 H -0.193 1.193 14 H -0.193 1.193 15 H -0.207 1.207 16 C 0.018 3.982 17 C -0.105 4.105 18 C -0.134 4.134 19 C -0.149 4.149 20 C -0.142 4.142 21 C -0.144 4.144 22 C -0.137 4.137 23 N -0.294 5.294 24 C 0.045 3.955 25 H 0.174 0.826 26 H 0.159 0.841 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.155 0.845 32 H 0.166 0.834 33 H 0.164 0.836 34 H 0.148 0.852 35 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 0.908 -5.949 7.247 9.420 hybrid contribution 0.716 0.201 -0.363 0.827 sum 1.624 -5.749 6.884 9.114 Atomic orbital electron populations 1.81182 1.12968 1.09290 1.14659 1.25510 0.92122 0.91989 0.90872 1.16400 0.84282 0.96465 1.26513 1.20990 0.92521 0.97143 0.89430 1.21018 0.95219 0.97292 1.15947 1.19146 0.86097 0.89943 0.91822 1.42648 1.00220 1.06217 1.60011 1.19592 1.03691 0.88415 1.32186 0.89837 1.25938 0.99892 1.00417 0.93500 1.69992 1.23879 1.38480 1.19255 0.85237 0.78456 0.78601 0.78423 1.19252 1.19308 1.20676 1.20726 0.99450 0.85374 0.92631 1.20387 0.95436 0.97791 0.96878 1.21117 0.97423 0.99082 0.95794 1.21378 1.00646 0.99022 0.93881 1.21445 0.94374 0.97577 1.00812 1.21437 0.98156 1.00462 0.94374 1.21330 0.98695 0.98176 0.95531 1.67343 1.08129 1.30031 1.23920 1.22736 0.88253 0.96876 0.87633 0.82566 0.84125 0.91509 0.90334 0.87799 0.88043 0.84543 0.83423 0.83619 0.85219 0.81575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -17.42 18.54 19.00 0.35 -17.07 16 2 C 0.31 9.74 15.37 88.33 1.36 11.10 16 3 C -0.22 -7.05 5.76 -21.16 -0.12 -7.18 16 4 C 0.03 0.75 9.85 22.48 0.22 0.97 16 5 C -0.27 -9.11 8.52 22.25 0.19 -8.92 16 6 C 0.37 15.62 7.30 133.25 0.97 16.59 16 7 N -0.41 -18.34 2.62 -521.99 -1.37 -19.70 16 8 C -0.31 -15.39 9.03 84.06 0.76 -14.63 16 9 H 0.08 4.42 7.58 -2.91 -0.02 4.40 16 10 C 0.01 0.29 4.95 84.89 0.42 0.71 16 11 N -0.88 -43.20 11.30 21.66 0.24 -42.96 16 12 Si 0.97 38.81 29.61 68.60 2.03 40.84 16 13 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 14 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 15 H -0.28 -11.26 7.11 99.48 0.71 -10.55 16 16 C 0.14 5.66 5.02 85.63 0.43 6.09 16 17 C -0.10 -3.69 5.46 -19.87 -0.11 -3.80 16 18 C -0.12 -4.03 9.70 22.27 0.22 -3.81 16 19 C -0.13 -3.70 10.05 22.27 0.22 -3.47 16 20 C -0.12 -3.01 10.05 22.27 0.22 -2.79 16 21 C -0.13 -3.18 10.05 22.27 0.22 -2.96 16 22 C -0.12 -3.56 9.62 22.27 0.21 -3.35 16 23 N -0.58 -24.48 9.30 -192.19 -1.79 -26.27 16 24 C 0.21 7.42 10.92 85.07 0.93 8.35 16 25 H 0.16 3.46 8.06 -2.91 -0.02 3.43 16 26 H 0.14 4.24 5.10 -2.91 -0.01 4.22 16 27 H 0.28 12.71 8.31 -92.71 -0.77 11.94 16 28 H 0.08 2.84 5.80 -2.39 -0.01 2.83 16 29 H 0.10 4.68 5.25 -2.39 -0.01 4.67 16 30 H 0.10 3.83 8.06 -2.91 -0.02 3.81 16 31 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 32 H 0.15 2.57 8.06 -2.91 -0.02 2.54 16 33 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 34 H 0.13 3.51 6.50 -2.91 -0.02 3.49 16 35 H 0.17 4.83 8.06 -2.91 -0.02 4.81 16 Total: -1.00 -57.20 311.20 6.75 -50.45 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: 1.13 Total: 21.79 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: 6.15 Total: -7.09 kcal Atomic # 7 Polarization: -103.44 SS G_CDS: -2.56 Total: -106.00 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 2.03 Total: 40.84 kcal Total: -57.20 6.75 -50.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166993191.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.647 kcal (2) G-P(sol) polarization free energy of solvation -57.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds