Wall clock time and date at job start Wed Apr 15 2020 11:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39654 * 120.14986 * 350.61872 * 3 2 1 5 5 C 1.37930 * 119.84358 * 180.02562 * 4 3 2 6 6 C 1.38385 * 120.15173 * 0.02562 * 5 4 3 7 7 C 1.38333 * 120.30642 * 0.02562 * 6 5 4 8 8 C 1.37970 * 120.15027 * 359.97438 * 7 6 5 9 9 C 1.50709 * 120.07529 * 180.02562 * 8 7 6 10 10 N 1.46504 * 109.47024 * 260.00091 * 9 8 7 11 11 C 1.38823 * 120.00082 * 179.97438 * 10 9 8 12 12 C 1.39797 * 119.58041 * 0.02562 * 11 10 9 13 13 C 1.38603 * 119.48812 * 179.97438 * 12 11 10 14 14 C 1.38389 * 118.67834 * 0.02562 * 13 12 11 15 15 C 1.40546 * 119.15185 * 359.97438 * 14 13 12 16 16 C 1.41318 * 119.78793 * 179.97438 * 15 14 13 17 17 H 1.08004 * 119.99779 * 0.02562 * 16 15 14 18 18 C 1.40028 * 120.00565 * 179.97438 * 16 15 14 19 19 N 1.30743 * 119.99580 * 0.02562 * 18 16 15 20 20 Si 1.86791 * 120.00094 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47428 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47155 * 120.00683 * 20 18 16 23 23 H 1.48498 * 109.47215 * 240.00431 * 20 18 16 24 24 N 1.31951 * 119.58384 * 179.72324 * 11 10 9 25 25 H 1.07994 * 120.08031 * 0.04296 * 4 3 2 26 26 H 1.07998 * 119.92071 * 180.29633 * 5 4 3 27 27 H 1.07998 * 119.84643 * 179.97438 * 6 5 4 28 28 H 1.08004 * 119.92590 * 180.02562 * 7 6 5 29 29 H 1.08999 * 109.47034 * 19.99907 * 9 8 7 30 30 H 1.08998 * 109.47261 * 140.00507 * 9 8 7 31 31 H 0.96999 * 119.99729 * 0.02562 * 10 9 8 32 32 H 1.07995 * 120.25478 * 359.95708 * 12 11 10 33 33 H 1.07997 * 120.66086 * 180.02562 * 13 12 11 34 34 H 1.08003 * 120.42140 * 179.97438 * 14 13 12 35 35 H 0.97001 * 120.00017 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2700 -1.1905 0.1968 5 6 4.6492 -1.1825 0.1962 6 6 5.3374 0.0022 0.0016 7 6 4.6484 1.1859 -0.1929 8 6 3.2687 1.1923 -0.1946 9 6 2.5198 2.4828 -0.4073 10 7 2.0683 3.0041 0.8853 11 6 1.3522 4.1919 0.9428 12 6 1.0662 4.8832 -0.2381 13 6 0.3506 6.0687 -0.1785 14 6 -0.0609 6.5346 1.0580 15 6 0.2577 5.7941 2.2093 16 6 -0.1554 6.2577 3.4788 17 1 -0.7144 7.1780 3.5619 18 6 0.1591 5.5233 4.6288 19 7 0.8354 4.4089 4.5281 20 14 -0.3876 6.1358 6.3066 21 1 -1.1327 7.4107 6.1496 22 1 -1.2691 5.1225 6.9403 23 1 0.8040 6.3607 7.1638 24 7 0.9449 4.6511 2.1109 25 1 2.7342 -2.1157 0.3490 26 1 5.1933 -2.1037 0.3435 27 1 6.4174 0.0029 0.0024 28 1 5.1917 2.1069 -0.3446 29 1 3.1774 3.2104 -0.8829 30 1 1.6563 2.3005 -1.0471 31 1 2.2705 2.5196 1.7009 32 1 1.4005 4.4967 -1.1895 33 1 0.1188 6.6180 -1.0790 34 1 -0.6198 7.4554 1.1371 35 1 1.0536 3.9003 5.3247 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167635224.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:53 Heat of formation + Delta-G solvation = 94.917029 kcal Electronic energy + Delta-G solvation = -19919.145306 eV Core-core repulsion = 16882.099974 eV Total energy + Delta-G solvation = -3037.045333 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.85337 -38.16131 -36.28873 -35.24390 -33.35282 -31.67106 -31.44517 -30.28897 -28.71401 -25.68965 -25.30004 -23.79341 -21.98818 -21.31405 -20.36365 -18.78364 -17.34838 -16.67853 -15.86883 -15.73958 -14.94973 -14.78020 -14.49890 -14.27542 -13.83239 -13.47560 -13.30558 -13.16654 -13.05088 -12.72198 -12.57571 -12.30369 -12.00081 -11.86503 -11.48491 -11.17926 -11.12913 -10.95181 -10.59003 -10.44196 -9.90252 -9.50478 -9.15622 -9.04520 -8.88889 -7.89231 -7.49191 -6.52880 -6.30491 -4.44977 0.63054 1.07598 2.80915 2.88437 2.95579 3.13284 3.17803 3.25701 3.31396 3.71509 3.89391 4.00653 4.33465 4.57285 4.65184 4.77878 4.86710 5.07195 5.22936 5.47296 5.58810 5.73597 5.86733 6.04567 6.08236 6.16758 6.18429 6.33036 6.57517 6.59828 6.86582 6.90328 6.94446 7.26880 7.60131 7.61141 7.81801 7.92644 8.18175 8.36105 8.66986 8.82225 9.13117 10.26446 10.42526 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.018110 B = 0.004548 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.696847 B = 6154.996117 C = 6755.976384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C 0.246 3.754 3 C -0.009 4.009 4 C -0.076 4.076 5 C -0.120 4.120 6 C -0.094 4.094 7 C -0.101 4.101 8 C -0.049 4.049 9 C 0.174 3.826 10 N -0.734 5.734 11 C 0.412 3.588 12 C -0.367 4.367 13 C -0.031 4.031 14 C -0.315 4.315 15 C 0.292 3.708 16 C -0.434 4.434 17 H 0.083 0.917 18 C 0.071 3.929 19 N -0.715 5.715 20 Si 0.904 3.096 21 H -0.261 1.261 22 H -0.274 1.274 23 H -0.274 1.274 24 N -0.529 5.529 25 H 0.132 0.868 26 H 0.132 0.868 27 H 0.130 0.870 28 H 0.136 0.864 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.397 0.603 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.592 -10.294 -6.760 16.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.075 5.075 2 C -0.070 4.070 3 C -0.013 4.013 4 C -0.096 4.096 5 C -0.138 4.138 6 C -0.113 4.113 7 C -0.119 4.119 8 C -0.052 4.052 9 C 0.048 3.952 10 N -0.371 5.371 11 C 0.173 3.827 12 C -0.393 4.393 13 C -0.056 4.056 14 C -0.338 4.338 15 C 0.165 3.835 16 C -0.466 4.466 17 H 0.102 0.898 18 C -0.154 4.154 19 N -0.337 5.337 20 Si 0.729 3.271 21 H -0.184 1.184 22 H -0.200 1.200 23 H -0.199 1.199 24 N -0.251 5.251 25 H 0.150 0.850 26 H 0.150 0.850 27 H 0.148 0.852 28 H 0.154 0.846 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.231 0.769 32 H 0.107 0.893 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.090 -10.894 -6.084 15.437 hybrid contribution 0.091 0.516 0.248 0.580 sum 9.181 -10.377 -5.836 15.035 Atomic orbital electron populations 1.81261 1.12000 1.06812 1.07447 1.25562 0.92643 0.94203 0.94568 1.15956 0.84584 0.94647 1.06069 1.21168 0.94449 0.96546 0.97439 1.21096 0.93553 0.98687 1.00454 1.21389 1.00449 0.92330 0.97146 1.21095 0.92714 0.98935 0.99171 1.20120 0.94040 0.93737 0.97292 1.20025 0.97004 0.90380 0.87768 1.44033 1.62226 1.24644 1.06234 1.18458 0.88435 0.85255 0.90571 1.20591 1.19647 1.03066 0.96031 1.20588 0.94647 0.94245 0.96104 1.21536 1.14407 1.04340 0.93552 1.18201 0.86802 0.86196 0.92252 1.19621 1.30138 1.07066 0.89787 0.89845 1.26050 0.93980 0.94359 1.00991 1.70163 1.23996 1.09918 1.29603 0.86329 0.79170 0.79945 0.81687 1.18428 1.19976 1.19929 1.68190 1.19527 1.16033 1.21316 0.85007 0.85044 0.85185 0.84636 0.91288 0.92218 0.76851 0.89275 0.88926 0.88696 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -7.42 18.54 41.84 0.78 -6.65 16 2 C 0.25 3.85 13.99 -22.47 -0.31 3.54 16 3 C -0.01 -0.11 5.73 -106.93 -0.61 -0.72 16 4 C -0.08 -0.70 9.76 -39.17 -0.38 -1.08 16 5 C -0.12 -0.89 10.03 -39.64 -0.40 -1.29 16 6 C -0.09 -0.73 10.04 -39.49 -0.40 -1.12 16 7 C -0.10 -0.98 9.66 -39.64 -0.38 -1.36 16 8 C -0.05 -0.60 5.28 -104.21 -0.55 -1.15 16 9 C 0.17 2.69 4.44 -5.19 -0.02 2.67 16 10 N -0.73 -14.87 5.71 -61.57 -0.35 -15.22 16 11 C 0.41 10.27 7.65 -155.33 -1.19 9.09 16 12 C -0.37 -8.66 9.34 -38.86 -0.36 -9.02 16 13 C -0.03 -0.75 10.15 -39.39 -0.40 -1.15 16 14 C -0.32 -8.18 9.83 -38.66 -0.38 -8.56 16 15 C 0.29 8.34 6.55 -85.00 -0.56 7.78 16 16 C -0.43 -12.03 9.14 -37.74 -0.34 -12.38 16 17 H 0.08 2.17 7.85 -52.48 -0.41 1.76 16 18 C 0.07 1.86 5.50 -17.34 -0.10 1.77 16 19 N -0.72 -19.44 11.46 55.55 0.64 -18.80 16 20 Si 0.90 19.14 29.56 -169.99 -5.02 14.12 16 21 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 22 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 24 N -0.53 -14.96 7.89 -10.33 -0.08 -15.05 16 25 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 26 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 27 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 28 H 0.14 1.16 8.04 -52.48 -0.42 0.73 16 29 H 0.07 0.99 7.78 -51.93 -0.40 0.59 16 30 H 0.06 0.99 7.26 -51.93 -0.38 0.61 16 31 H 0.40 8.20 8.58 -40.82 -0.35 7.85 16 32 H 0.09 1.86 6.68 -52.49 -0.35 1.50 16 33 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 34 H 0.09 2.29 8.06 -52.48 -0.42 1.87 16 35 H 0.27 6.62 8.29 -40.82 -0.34 6.29 16 LS Contribution 316.32 15.07 4.77 4.77 Total: -1.00 -32.55 316.32 -9.23 -41.78 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -3.56 Total: 8.05 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -6.39 Total: -13.00 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: 0.98 Total: -55.72 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.02 Total: 14.12 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.55 -9.23 -41.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167635224.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.701 kcal (2) G-P(sol) polarization free energy of solvation -32.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds