Wall clock time and date at job start Wed Apr 15 2020 11:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39654 * 120.14986 * 350.61872 * 3 2 1 5 5 C 1.37930 * 119.84358 * 180.02562 * 4 3 2 6 6 C 1.38385 * 120.15173 * 0.02562 * 5 4 3 7 7 C 1.38333 * 120.30642 * 0.02562 * 6 5 4 8 8 C 1.37970 * 120.15027 * 359.97438 * 7 6 5 9 9 C 1.50709 * 120.07529 * 180.02562 * 8 7 6 10 10 N 1.46504 * 109.47024 * 260.00091 * 9 8 7 11 11 C 1.38823 * 120.00082 * 179.97438 * 10 9 8 12 12 C 1.39797 * 119.58041 * 0.02562 * 11 10 9 13 13 C 1.38603 * 119.48812 * 179.97438 * 12 11 10 14 14 C 1.38389 * 118.67834 * 0.02562 * 13 12 11 15 15 C 1.40546 * 119.15185 * 359.97438 * 14 13 12 16 16 C 1.41318 * 119.78793 * 179.97438 * 15 14 13 17 17 H 1.08004 * 119.99779 * 0.02562 * 16 15 14 18 18 C 1.40028 * 120.00565 * 179.97438 * 16 15 14 19 19 N 1.30743 * 119.99580 * 0.02562 * 18 16 15 20 20 Si 1.86791 * 120.00094 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47428 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47155 * 120.00683 * 20 18 16 23 23 H 1.48498 * 109.47215 * 240.00431 * 20 18 16 24 24 N 1.31951 * 119.58384 * 179.72324 * 11 10 9 25 25 H 1.07994 * 120.08031 * 0.04296 * 4 3 2 26 26 H 1.07998 * 119.92071 * 180.29633 * 5 4 3 27 27 H 1.07998 * 119.84643 * 179.97438 * 6 5 4 28 28 H 1.08004 * 119.92590 * 180.02562 * 7 6 5 29 29 H 1.08999 * 109.47034 * 19.99907 * 9 8 7 30 30 H 1.08998 * 109.47261 * 140.00507 * 9 8 7 31 31 H 0.96999 * 119.99729 * 0.02562 * 10 9 8 32 32 H 1.07995 * 120.25478 * 359.95708 * 12 11 10 33 33 H 1.07997 * 120.66086 * 180.02562 * 13 12 11 34 34 H 1.08003 * 120.42140 * 179.97438 * 14 13 12 35 35 H 0.97001 * 120.00017 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2700 -1.1905 0.1968 5 6 4.6492 -1.1825 0.1962 6 6 5.3374 0.0022 0.0016 7 6 4.6484 1.1859 -0.1929 8 6 3.2687 1.1923 -0.1946 9 6 2.5198 2.4828 -0.4073 10 7 2.0683 3.0041 0.8853 11 6 1.3522 4.1919 0.9428 12 6 1.0662 4.8832 -0.2381 13 6 0.3506 6.0687 -0.1785 14 6 -0.0609 6.5346 1.0580 15 6 0.2577 5.7941 2.2093 16 6 -0.1554 6.2577 3.4788 17 1 -0.7144 7.1780 3.5619 18 6 0.1591 5.5233 4.6288 19 7 0.8354 4.4089 4.5281 20 14 -0.3876 6.1358 6.3066 21 1 -1.1327 7.4107 6.1496 22 1 -1.2691 5.1225 6.9403 23 1 0.8040 6.3607 7.1638 24 7 0.9449 4.6511 2.1109 25 1 2.7342 -2.1157 0.3490 26 1 5.1933 -2.1037 0.3435 27 1 6.4174 0.0029 0.0024 28 1 5.1917 2.1069 -0.3446 29 1 3.1774 3.2104 -0.8829 30 1 1.6563 2.3005 -1.0471 31 1 2.2705 2.5196 1.7009 32 1 1.4005 4.4967 -1.1895 33 1 0.1188 6.6180 -1.0790 34 1 -0.6198 7.4554 1.1371 35 1 1.0536 3.9003 5.3247 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167635224.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:52 Heat of formation + Delta-G solvation = 75.899717 kcal Electronic energy + Delta-G solvation = -19919.969959 eV Core-core repulsion = 16882.099974 eV Total energy + Delta-G solvation = -3037.869985 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.79075 -39.97454 -37.50794 -36.79637 -35.20442 -32.96684 -32.26865 -32.15882 -30.41051 -27.34925 -26.85397 -24.64464 -23.50602 -22.76743 -22.08957 -19.73884 -19.26116 -18.22125 -16.96425 -16.79660 -16.55472 -16.35025 -16.01199 -15.40681 -15.26180 -14.89268 -14.85020 -14.70207 -14.16287 -13.97099 -13.90418 -13.68151 -13.50661 -13.22071 -12.88128 -12.75560 -12.61393 -12.28995 -12.25495 -11.96782 -11.74362 -11.34270 -10.72154 -9.91637 -9.88536 -9.85206 -9.47572 -8.35346 -8.25166 -6.50485 -0.22718 0.33489 1.02818 1.31557 1.39450 1.55023 1.55219 1.60722 1.96678 2.23390 2.56542 2.86140 2.90248 3.06949 3.57882 3.82749 4.03183 4.16655 4.33598 4.36606 4.44308 4.55690 4.63963 4.73771 4.79564 4.95155 4.97584 5.02726 5.08251 5.32620 5.37440 5.46498 5.51768 5.68091 5.91642 5.93285 6.02662 6.19937 6.43192 6.50435 6.79338 6.89180 7.17190 8.31377 8.49122 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.018110 B = 0.004548 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.696847 B = 6154.996117 C = 6755.976384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C 0.268 3.732 3 C -0.037 4.037 4 C -0.070 4.070 5 C -0.106 4.106 6 C -0.079 4.079 7 C -0.103 4.103 8 C -0.063 4.063 9 C 0.174 3.826 10 N -0.727 5.727 11 C 0.395 3.605 12 C -0.369 4.369 13 C -0.030 4.030 14 C -0.343 4.343 15 C 0.258 3.742 16 C -0.471 4.471 17 H 0.087 0.913 18 C 0.025 3.975 19 N -0.752 5.752 20 Si 0.987 3.013 21 H -0.255 1.255 22 H -0.269 1.269 23 H -0.263 1.263 24 N -0.564 5.564 25 H 0.149 0.851 26 H 0.170 0.830 27 H 0.166 0.834 28 H 0.148 0.852 29 H 0.084 0.916 30 H 0.044 0.956 31 H 0.392 0.608 32 H 0.117 0.883 33 H 0.130 0.870 34 H 0.103 0.897 35 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.131 -11.489 -6.895 18.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.145 5.145 2 C -0.046 4.046 3 C -0.040 4.040 4 C -0.091 4.091 5 C -0.124 4.124 6 C -0.098 4.098 7 C -0.121 4.121 8 C -0.066 4.066 9 C 0.050 3.950 10 N -0.363 5.363 11 C 0.155 3.845 12 C -0.395 4.395 13 C -0.054 4.054 14 C -0.366 4.366 15 C 0.131 3.869 16 C -0.503 4.503 17 H 0.105 0.895 18 C -0.196 4.196 19 N -0.374 5.374 20 Si 0.807 3.193 21 H -0.178 1.178 22 H -0.194 1.194 23 H -0.188 1.188 24 N -0.287 5.287 25 H 0.166 0.834 26 H 0.188 0.812 27 H 0.184 0.816 28 H 0.165 0.835 29 H 0.102 0.898 30 H 0.062 0.938 31 H 0.226 0.774 32 H 0.135 0.865 33 H 0.148 0.852 34 H 0.121 0.879 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.652 -12.113 -6.268 17.938 hybrid contribution -0.523 0.765 0.145 0.938 sum 11.130 -11.348 -6.123 17.033 Atomic orbital electron populations 1.81256 1.13986 1.08956 1.10333 1.26249 0.93419 0.92317 0.92616 1.16150 0.82749 0.96223 1.08922 1.21450 0.95530 0.95850 0.96244 1.21565 0.92614 1.00206 0.98013 1.21836 1.02225 0.91266 0.94444 1.21295 0.91414 1.00634 0.98767 1.19864 0.95008 0.91940 0.99831 1.20162 0.96998 0.92530 0.85344 1.44224 1.61047 1.23069 1.07949 1.18934 0.88532 0.86627 0.90436 1.20951 1.18901 1.02830 0.96791 1.21008 0.93399 0.94283 0.96701 1.21698 1.15862 1.05036 0.94020 1.18695 0.87563 0.87029 0.93586 1.19977 1.31533 1.07973 0.90828 0.89530 1.26980 0.93560 0.94209 1.04895 1.70263 1.24911 1.11097 1.31144 0.85101 0.78920 0.79382 0.75902 1.17794 1.19438 1.18780 1.68174 1.20741 1.16615 1.23145 0.83361 0.81243 0.81612 0.83465 0.89823 0.93752 0.77443 0.86487 0.85249 0.87899 0.91393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -18.33 18.54 19.00 0.35 -17.97 16 2 C 0.27 8.67 13.99 88.33 1.24 9.90 16 3 C -0.04 -0.87 5.73 -21.36 -0.12 -1.00 16 4 C -0.07 -1.11 9.76 22.54 0.22 -0.89 16 5 C -0.11 -1.07 10.03 22.23 0.22 -0.85 16 6 C -0.08 -0.84 10.04 22.33 0.22 -0.62 16 7 C -0.10 -1.70 9.66 22.23 0.21 -1.48 16 8 C -0.06 -1.49 5.28 -19.59 -0.10 -1.60 16 9 C 0.17 5.36 4.44 85.64 0.38 5.74 16 10 N -0.73 -30.13 5.71 -348.70 -1.99 -32.12 16 11 C 0.40 20.19 7.65 133.42 1.02 21.21 16 12 C -0.37 -17.40 9.34 22.73 0.21 -17.18 16 13 C -0.03 -1.41 10.15 22.39 0.23 -1.18 16 14 C -0.34 -18.28 9.83 22.87 0.22 -18.05 16 15 C 0.26 15.33 6.55 40.17 0.26 15.60 16 16 C -0.47 -27.11 9.14 23.46 0.21 -26.90 16 17 H 0.09 4.69 7.85 -2.91 -0.02 4.66 16 18 C 0.03 1.35 5.50 85.29 0.47 1.81 16 19 N -0.75 -42.16 11.46 21.84 0.25 -41.91 16 20 Si 0.99 39.94 29.56 68.60 2.03 41.97 16 21 H -0.25 -9.92 7.11 99.48 0.71 -9.22 16 22 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 23 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 24 N -0.56 -33.15 7.89 -186.59 -1.47 -34.62 16 25 H 0.15 1.81 8.06 -2.91 -0.02 1.78 16 26 H 0.17 0.53 8.06 -2.91 -0.02 0.50 16 27 H 0.17 0.67 8.06 -2.91 -0.02 0.64 16 28 H 0.15 2.06 8.04 -2.91 -0.02 2.04 16 29 H 0.08 2.31 7.78 -2.39 -0.02 2.30 16 30 H 0.04 1.50 7.26 -2.39 -0.02 1.48 16 31 H 0.39 16.75 8.58 -92.71 -0.80 15.96 16 32 H 0.12 4.74 6.68 -2.91 -0.02 4.73 16 33 H 0.13 5.04 8.06 -2.91 -0.02 5.02 16 34 H 0.10 5.11 8.06 -2.91 -0.02 5.09 16 35 H 0.28 13.93 8.29 -92.71 -0.77 13.16 16 Total: -1.00 -75.67 316.32 4.41 -71.27 By element: Atomic # 1 Polarization: 28.52 SS G_CDS: 0.34 Total: 28.86 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: 4.90 Total: -15.47 kcal Atomic # 7 Polarization: -123.76 SS G_CDS: -2.86 Total: -126.62 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 2.03 Total: 41.97 kcal Total: -75.67 4.41 -71.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167635224.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.168 kcal (2) G-P(sol) polarization free energy of solvation -75.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds