Wall clock time and date at job start Wed Apr 15 2020 11:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86803 * 119.99897 * 2 1 4 4 H 1.48503 * 109.47340 * 275.07725 * 3 2 1 5 5 H 1.48508 * 109.46778 * 35.07911 * 3 2 1 6 6 H 1.48498 * 109.46892 * 155.07493 * 3 2 1 7 7 C 1.39923 * 120.00242 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99542 * 339.60523 * 7 2 1 9 9 C 1.41411 * 120.00425 * 159.60141 * 7 2 1 10 10 C 1.40795 * 120.20256 * 329.76947 * 9 7 2 11 11 C 1.37657 * 119.89408 * 180.02562 * 10 9 7 12 12 C 1.38511 * 120.32667 * 359.72644 * 11 10 9 13 13 C 1.39318 * 120.42092 * 0.55242 * 12 11 10 14 14 N 1.39704 * 119.95050 * 179.72069 * 13 12 11 15 15 C 1.39969 * 120.00289 * 323.49750 * 14 13 12 16 16 C 1.39573 * 119.83563 * 333.53238 * 15 14 13 17 17 C 1.36476 * 120.74448 * 179.97438 * 16 15 14 18 18 C 1.39285 * 120.10248 * 359.72140 * 17 16 15 19 19 N 1.37243 * 133.66684 * 179.59673 * 18 17 16 20 20 H 0.97002 * 125.46619 * 0.70262 * 19 18 17 21 21 N 1.39861 * 109.05641 * 180.44022 * 19 18 17 22 22 C 1.30247 * 110.09386 * 0.25882 * 21 19 18 23 23 C 1.40786 * 119.63768 * 0.53894 * 18 17 16 24 24 C 1.38070 * 119.83718 * 153.51648 * 15 14 13 25 25 C 1.38337 * 120.09301 * 359.44576 * 13 12 11 26 26 H 0.96994 * 120.00097 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.05139 * 359.97438 * 10 9 7 28 28 H 1.08004 * 119.83400 * 179.97438 * 11 10 9 29 29 H 1.08003 * 119.78830 * 180.28985 * 12 11 10 30 30 H 0.97002 * 120.00063 * 143.50431 * 14 13 12 31 31 H 1.08003 * 119.62393 * 0.02657 * 16 15 14 32 32 H 1.08008 * 119.94630 * 180.02562 * 17 16 15 33 33 H 1.07992 * 126.09775 * 179.97438 * 22 21 19 34 34 H 1.07999 * 120.26717 * 359.97348 * 24 15 14 35 35 H 1.07998 * 120.16124 * 180.25035 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3825 2.1085 -1.3946 5 1 1.4974 2.6193 0.8047 6 1 3.5894 1.4116 0.5900 7 6 2.0080 -1.2117 -0.0005 8 1 1.5187 -2.1179 0.3250 9 6 3.3556 -1.2500 -0.4274 10 6 3.8171 -0.3407 -1.3982 11 6 5.1301 -0.3840 -1.8095 12 6 6.0021 -1.3144 -1.2688 13 6 5.5583 -2.2242 -0.3116 14 7 6.4448 -3.1623 0.2230 15 6 7.4275 -3.7392 -0.5898 16 6 7.2189 -3.8400 -1.9662 17 6 8.1646 -4.3986 -2.7761 18 6 9.3575 -4.8715 -2.2342 19 7 10.4684 -5.4738 -2.7696 20 1 10.6032 -5.6723 -3.7094 21 7 11.3774 -5.7499 -1.7431 22 6 10.8930 -5.3587 -0.5991 23 6 9.5762 -4.7800 -0.8465 24 6 8.5985 -4.2055 -0.0262 25 6 4.2425 -2.1962 0.1144 26 1 -0.4850 0.8400 0.0004 27 1 3.1419 0.3889 -1.8202 28 1 5.4830 0.3137 -2.5546 29 1 7.0316 -1.3376 -1.5944 30 1 6.3793 -3.4139 1.1575 31 1 6.2990 -3.4709 -2.3952 32 1 7.9899 -4.4697 -3.8396 33 1 11.3788 -5.4473 0.3613 34 1 8.7592 -4.1264 1.0388 35 1 3.8983 -2.8983 0.8594 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001174274158.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:57 Heat of formation + Delta-G solvation = 108.146625 kcal Electronic energy + Delta-G solvation = -19875.939396 eV Core-core repulsion = 16839.467742 eV Total energy + Delta-G solvation = -3036.471654 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.12139 -38.83048 -37.06898 -34.52127 -33.28248 -32.17415 -30.39771 -29.78171 -29.36309 -26.97409 -25.22218 -23.07497 -22.15889 -21.69167 -20.92212 -20.30717 -18.01557 -17.49867 -16.95742 -16.12400 -15.70426 -14.95052 -14.81216 -14.61869 -14.42704 -14.05461 -13.60742 -13.44051 -12.87617 -12.77043 -12.53832 -12.29970 -11.85493 -11.64707 -11.16907 -11.00075 -10.85711 -10.76630 -10.59188 -10.35567 -10.01076 -9.73957 -9.50655 -9.13460 -8.51988 -7.85403 -7.70377 -6.98971 -6.57149 -4.54037 0.99683 1.64297 2.51705 2.57338 2.67970 2.72820 3.10489 3.20263 3.31016 3.82673 3.93466 3.97154 4.46859 4.65808 4.68638 4.88017 5.30598 5.36679 5.43182 5.54491 5.78148 5.95662 6.03547 6.21992 6.30377 6.44813 6.47517 6.50500 6.65154 6.68953 6.82367 6.96721 7.23400 7.30697 7.47612 7.57084 7.59406 7.65690 7.86029 8.18281 8.23887 8.35989 8.62689 8.78152 10.03475 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.045477 B = 0.003527 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.545099 B = 7937.748361 C = 8060.842543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.087 3.913 3 Si 0.911 3.089 4 H -0.269 1.269 5 H -0.291 1.291 6 H -0.245 1.245 7 C -0.451 4.451 8 H 0.090 0.910 9 C 0.113 3.887 10 C -0.252 4.252 11 C -0.059 4.059 12 C -0.270 4.270 13 C 0.194 3.806 14 N -0.690 5.690 15 C 0.178 3.822 16 C -0.097 4.097 17 C -0.113 4.113 18 C 0.087 3.913 19 N -0.515 5.515 20 H 0.436 0.564 21 N -0.256 5.256 22 C 0.065 3.935 23 C -0.143 4.143 24 C -0.125 4.125 25 C -0.243 4.243 26 H 0.285 0.715 27 H 0.100 0.900 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.402 0.598 31 H 0.140 0.860 32 H 0.125 0.875 33 H 0.193 0.807 34 H 0.126 0.874 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.631 -6.029 -2.045 15.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.133 4.133 3 Si 0.737 3.263 4 H -0.195 1.195 5 H -0.218 1.218 6 H -0.168 1.168 7 C -0.479 4.479 8 H 0.108 0.892 9 C 0.110 3.890 10 C -0.272 4.272 11 C -0.078 4.078 12 C -0.291 4.291 13 C 0.100 3.900 14 N -0.314 5.314 15 C 0.077 3.923 16 C -0.120 4.120 17 C -0.135 4.135 18 C -0.028 4.028 19 N -0.232 5.232 20 H 0.279 0.721 21 N -0.070 5.070 22 C -0.133 4.133 23 C -0.151 4.151 24 C -0.151 4.151 25 C -0.265 4.265 26 H 0.096 0.904 27 H 0.118 0.882 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.238 0.762 31 H 0.158 0.842 32 H 0.143 0.857 33 H 0.209 0.791 34 H 0.144 0.856 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 15.287 -6.425 -2.714 16.803 hybrid contribution -0.475 0.959 0.232 1.095 sum 14.812 -5.467 -2.482 15.982 Atomic orbital electron populations 1.69719 1.08192 1.30324 1.34783 1.26148 0.94622 1.01787 0.90706 0.86315 0.81279 0.79722 0.78935 1.19540 1.21834 1.16835 1.19453 0.94039 0.96354 1.38053 0.89202 1.17484 0.92499 0.89978 0.89074 1.21056 0.96061 1.05936 1.04126 1.20442 0.93492 0.96392 0.97485 1.20222 0.98706 1.02271 1.07916 1.17458 0.88545 0.88590 0.95422 1.42101 1.33166 1.44595 1.11528 1.17489 0.88669 0.95476 0.90696 1.20755 0.99837 0.98953 0.92420 1.19596 0.91377 1.02699 0.99830 1.18706 0.90611 1.00101 0.93366 1.45806 1.13116 1.55475 1.08793 0.72059 1.76437 1.15127 1.19265 0.96217 1.24971 0.93106 0.98235 0.96990 1.19550 0.96154 1.06966 0.92450 1.20001 0.91173 1.04558 0.99334 1.20736 0.90848 1.07175 1.07757 0.90434 0.88185 0.88649 0.88538 0.76246 0.84205 0.85748 0.79066 0.85638 0.88027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.12 13.93 55.55 0.77 -20.35 16 2 C 0.09 2.23 5.37 -17.35 -0.09 2.13 16 3 Si 0.91 20.40 24.62 -169.99 -4.19 16.22 16 4 H -0.27 -5.86 6.68 56.52 0.38 -5.48 16 5 H -0.29 -6.29 7.11 56.52 0.40 -5.88 16 6 H -0.25 -5.63 7.01 56.52 0.40 -5.24 16 7 C -0.45 -11.88 9.55 -37.74 -0.36 -12.25 16 8 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16 9 C 0.11 2.77 5.07 -106.85 -0.54 2.23 16 10 C -0.25 -5.87 7.29 -38.83 -0.28 -6.16 16 11 C -0.06 -1.23 10.01 -39.69 -0.40 -1.63 16 12 C -0.27 -5.35 7.94 -39.08 -0.31 -5.66 16 13 C 0.19 3.83 5.72 -83.83 -0.48 3.35 16 14 N -0.69 -11.15 5.44 -8.44 -0.05 -11.20 16 15 C 0.18 2.66 5.98 -83.71 -0.50 2.16 16 16 C -0.10 -1.43 8.04 -39.72 -0.32 -1.75 16 17 C -0.11 -1.45 10.01 -39.83 -0.40 -1.85 16 18 C 0.09 1.14 7.33 -84.09 -0.62 0.52 16 19 N -0.51 -5.98 7.38 32.39 0.24 -5.74 16 20 H 0.44 3.73 8.96 -182.78 -1.64 2.09 16 21 N -0.26 -3.18 12.55 31.87 0.40 -2.78 16 22 C 0.06 0.73 12.28 -15.14 -0.19 0.55 16 23 C -0.14 -1.88 6.36 -105.20 -0.67 -2.55 16 24 C -0.12 -1.65 10.00 -39.00 -0.39 -2.04 16 25 C -0.24 -5.38 9.71 -38.67 -0.38 -5.75 16 26 H 0.29 6.76 8.30 -40.82 -0.34 6.42 16 27 H 0.10 2.35 4.93 -52.49 -0.26 2.09 16 28 H 0.10 1.74 8.06 -52.48 -0.42 1.31 16 29 H 0.10 1.80 6.98 -52.48 -0.37 1.43 16 30 H 0.40 5.65 8.90 -40.82 -0.36 5.28 16 31 H 0.14 2.24 6.55 -52.48 -0.34 1.90 16 32 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 33 H 0.19 1.42 8.06 -52.49 -0.42 1.00 16 34 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 35 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 LS Contribution 298.36 15.07 4.50 4.50 Total: -1.00 -28.59 298.36 -8.92 -37.51 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -4.67 Total: 10.54 kcal Atomic # 6 Polarization: -22.76 SS G_CDS: -5.92 Total: -28.68 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: 1.37 Total: -40.08 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.19 Total: 16.22 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.59 -8.92 -37.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174274158.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.652 kcal (2) G-P(sol) polarization free energy of solvation -28.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds