Wall clock time and date at job start Wed Apr 15 2020 11:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86803 * 119.99897 * 2 1 4 4 H 1.48503 * 109.47340 * 275.07725 * 3 2 1 5 5 H 1.48508 * 109.46778 * 35.07911 * 3 2 1 6 6 H 1.48498 * 109.46892 * 155.07493 * 3 2 1 7 7 C 1.39923 * 120.00242 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99542 * 339.60523 * 7 2 1 9 9 C 1.41411 * 120.00425 * 159.60141 * 7 2 1 10 10 C 1.40795 * 120.20256 * 329.76947 * 9 7 2 11 11 C 1.37657 * 119.89408 * 180.02562 * 10 9 7 12 12 C 1.38511 * 120.32667 * 359.72644 * 11 10 9 13 13 C 1.39318 * 120.42092 * 0.55242 * 12 11 10 14 14 N 1.39704 * 119.95050 * 179.72069 * 13 12 11 15 15 C 1.39969 * 120.00289 * 323.49750 * 14 13 12 16 16 C 1.39573 * 119.83563 * 333.53238 * 15 14 13 17 17 C 1.36476 * 120.74448 * 179.97438 * 16 15 14 18 18 C 1.39285 * 120.10248 * 359.72140 * 17 16 15 19 19 N 1.37243 * 133.66684 * 179.59673 * 18 17 16 20 20 H 0.97002 * 125.46619 * 0.70262 * 19 18 17 21 21 N 1.39861 * 109.05641 * 180.44022 * 19 18 17 22 22 C 1.30247 * 110.09386 * 0.25882 * 21 19 18 23 23 C 1.40786 * 119.63768 * 0.53894 * 18 17 16 24 24 C 1.38070 * 119.83718 * 153.51648 * 15 14 13 25 25 C 1.38337 * 120.09301 * 359.44576 * 13 12 11 26 26 H 0.96994 * 120.00097 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.05139 * 359.97438 * 10 9 7 28 28 H 1.08004 * 119.83400 * 179.97438 * 11 10 9 29 29 H 1.08003 * 119.78830 * 180.28985 * 12 11 10 30 30 H 0.97002 * 120.00063 * 143.50431 * 14 13 12 31 31 H 1.08003 * 119.62393 * 0.02657 * 16 15 14 32 32 H 1.08008 * 119.94630 * 180.02562 * 17 16 15 33 33 H 1.07992 * 126.09775 * 179.97438 * 22 21 19 34 34 H 1.07999 * 120.26717 * 359.97348 * 24 15 14 35 35 H 1.07998 * 120.16124 * 180.25035 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3825 2.1085 -1.3946 5 1 1.4974 2.6193 0.8047 6 1 3.5894 1.4116 0.5900 7 6 2.0080 -1.2117 -0.0005 8 1 1.5187 -2.1179 0.3250 9 6 3.3556 -1.2500 -0.4274 10 6 3.8171 -0.3407 -1.3982 11 6 5.1301 -0.3840 -1.8095 12 6 6.0021 -1.3144 -1.2688 13 6 5.5583 -2.2242 -0.3116 14 7 6.4448 -3.1623 0.2230 15 6 7.4275 -3.7392 -0.5898 16 6 7.2189 -3.8400 -1.9662 17 6 8.1646 -4.3986 -2.7761 18 6 9.3575 -4.8715 -2.2342 19 7 10.4684 -5.4738 -2.7696 20 1 10.6032 -5.6723 -3.7094 21 7 11.3774 -5.7499 -1.7431 22 6 10.8930 -5.3587 -0.5991 23 6 9.5762 -4.7800 -0.8465 24 6 8.5985 -4.2055 -0.0262 25 6 4.2425 -2.1962 0.1144 26 1 -0.4850 0.8400 0.0004 27 1 3.1419 0.3889 -1.8202 28 1 5.4830 0.3137 -2.5546 29 1 7.0316 -1.3376 -1.5944 30 1 6.3793 -3.4139 1.1575 31 1 6.2990 -3.4709 -2.3952 32 1 7.9899 -4.4697 -3.8396 33 1 11.3788 -5.4473 0.3613 34 1 8.7592 -4.1264 1.0388 35 1 3.8983 -2.8983 0.8594 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001174274158.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:55 Heat of formation + Delta-G solvation = 91.056245 kcal Electronic energy + Delta-G solvation = -19876.680490 eV Core-core repulsion = 16839.467742 eV Total energy + Delta-G solvation = -3037.212749 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.10197 -40.26621 -38.44232 -35.97649 -34.94344 -33.20012 -32.13552 -30.88552 -30.68920 -28.25820 -27.03353 -24.16629 -23.44749 -22.75268 -22.46179 -21.76206 -19.50018 -18.68234 -18.17043 -17.71167 -17.11874 -16.48989 -16.23695 -15.79130 -15.57408 -15.38339 -14.84795 -14.58666 -14.40801 -14.30243 -13.94595 -13.74951 -13.33398 -13.20470 -12.70559 -12.60907 -12.28898 -12.11793 -11.83646 -11.75967 -11.54431 -11.35159 -11.06493 -10.70244 -9.62020 -9.50458 -9.14630 -8.88432 -7.88625 -6.49540 -0.00263 0.47772 0.82409 1.06663 1.30561 1.44287 1.52963 1.60792 1.85271 2.15973 2.53408 2.64108 2.89529 3.55324 3.69723 3.83630 3.93094 4.27674 4.33680 4.43008 4.48211 4.57804 4.71269 4.88736 4.96725 5.00383 5.09112 5.13154 5.30143 5.39293 5.52756 5.57950 5.65939 5.80861 5.89140 5.96598 6.11724 6.36959 6.44208 6.67075 6.69395 6.78820 6.86285 7.00235 8.20297 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.045477 B = 0.003527 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.545099 B = 7937.748361 C = 8060.842543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.051 3.949 3 Si 0.965 3.035 4 H -0.257 1.257 5 H -0.279 1.279 6 H -0.254 1.254 7 C -0.489 4.489 8 H 0.054 0.946 9 C 0.098 3.902 10 C -0.270 4.270 11 C -0.058 4.058 12 C -0.253 4.253 13 C 0.210 3.790 14 N -0.687 5.687 15 C 0.151 3.849 16 C -0.112 4.112 17 C -0.108 4.108 18 C 0.083 3.917 19 N -0.511 5.511 20 H 0.447 0.553 21 N -0.273 5.273 22 C 0.075 3.925 23 C -0.161 4.161 24 C -0.107 4.107 25 C -0.258 4.258 26 H 0.293 0.707 27 H 0.096 0.904 28 H 0.128 0.872 29 H 0.117 0.883 30 H 0.412 0.588 31 H 0.124 0.876 32 H 0.147 0.853 33 H 0.229 0.771 34 H 0.149 0.851 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.393 -6.033 -2.511 19.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.164 4.164 3 Si 0.789 3.211 4 H -0.182 1.182 5 H -0.205 1.205 6 H -0.178 1.178 7 C -0.519 4.519 8 H 0.073 0.927 9 C 0.095 3.905 10 C -0.290 4.290 11 C -0.077 4.077 12 C -0.274 4.274 13 C 0.113 3.887 14 N -0.312 5.312 15 C 0.052 3.948 16 C -0.135 4.135 17 C -0.130 4.130 18 C -0.033 4.033 19 N -0.229 5.229 20 H 0.293 0.707 21 N -0.087 5.087 22 C -0.123 4.123 23 C -0.169 4.169 24 C -0.132 4.132 25 C -0.281 4.281 26 H 0.104 0.896 27 H 0.113 0.887 28 H 0.146 0.854 29 H 0.135 0.865 30 H 0.249 0.751 31 H 0.141 0.859 32 H 0.164 0.836 33 H 0.245 0.755 34 H 0.167 0.833 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 19.095 -6.474 -3.201 20.416 hybrid contribution -1.293 0.708 0.314 1.508 sum 17.802 -5.766 -2.887 18.934 Atomic orbital electron populations 1.69749 1.09277 1.31445 1.37158 1.26796 0.95195 1.04190 0.90170 0.85491 0.79574 0.76542 0.79533 1.18237 1.20532 1.17775 1.19438 0.95566 0.95827 1.41046 0.92747 1.17608 0.92064 0.91222 0.89653 1.21114 0.97314 1.06058 1.04473 1.20792 0.92452 0.96856 0.97607 1.20528 0.99422 1.00857 1.06636 1.17433 0.88057 0.88677 0.94484 1.41966 1.32898 1.44176 1.12168 1.17612 0.89229 0.97271 0.90732 1.20695 0.99833 1.00238 0.92731 1.19741 0.90815 1.01664 1.00813 1.18890 0.90870 0.99697 0.93833 1.45883 1.12535 1.55022 1.09505 0.70680 1.76451 1.15606 1.19895 0.96749 1.25594 0.92119 0.96499 0.98070 1.19870 0.97062 1.07393 0.92586 1.20198 0.90057 1.02434 1.00525 1.20831 0.91906 1.07024 1.08321 0.89646 0.88662 0.85439 0.86461 0.75118 0.85856 0.83566 0.75472 0.83326 0.88175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.64 13.93 21.82 0.30 -46.34 16 2 C 0.05 2.74 5.37 85.25 0.46 3.19 16 3 Si 0.97 42.59 24.62 68.60 1.69 44.28 16 4 H -0.26 -10.71 6.68 99.48 0.66 -10.04 16 5 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 6 H -0.25 -11.43 7.01 99.48 0.70 -10.73 16 7 C -0.49 -27.35 9.55 23.46 0.22 -27.13 16 8 H 0.05 3.28 8.06 -2.91 -0.02 3.26 16 9 C 0.10 4.91 5.07 -21.31 -0.11 4.80 16 10 C -0.27 -12.47 7.29 22.76 0.17 -12.31 16 11 C -0.06 -2.30 10.01 22.20 0.22 -2.08 16 12 C -0.25 -9.40 7.94 22.60 0.18 -9.23 16 13 C 0.21 8.01 5.72 38.17 0.22 8.22 16 14 N -0.69 -20.89 5.44 -180.62 -0.98 -21.87 16 15 C 0.15 4.14 5.98 38.12 0.23 4.37 16 16 C -0.11 -3.08 8.04 22.18 0.18 -2.90 16 17 C -0.11 -2.50 10.01 22.11 0.22 -2.27 16 18 C 0.08 1.91 7.33 39.17 0.29 2.20 16 19 N -0.51 -10.33 7.38 -51.43 -0.38 -10.71 16 20 H 0.45 6.43 8.96 -213.47 -1.91 4.51 16 21 N -0.27 -5.87 12.55 -53.08 -0.67 -6.54 16 22 C 0.07 1.39 12.28 86.92 1.07 2.46 16 23 C -0.16 -3.65 6.36 -20.24 -0.13 -3.78 16 24 C -0.11 -2.46 10.00 22.65 0.23 -2.23 16 25 C -0.26 -11.59 9.71 22.86 0.22 -11.36 16 26 H 0.29 14.42 8.30 -92.71 -0.77 13.66 16 27 H 0.10 4.44 4.93 -2.91 -0.01 4.43 16 28 H 0.13 4.17 8.06 -2.91 -0.02 4.15 16 29 H 0.12 3.93 6.98 -2.91 -0.02 3.91 16 30 H 0.41 10.81 8.90 -92.71 -0.83 9.98 16 31 H 0.12 3.79 6.55 -2.91 -0.02 3.77 16 32 H 0.15 2.63 8.06 -2.91 -0.02 2.60 16 33 H 0.23 2.27 8.06 -2.91 -0.02 2.25 16 34 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 35 H 0.10 4.40 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -63.33 298.36 1.99 -61.34 By element: Atomic # 1 Polarization: 29.52 SS G_CDS: -1.63 Total: 27.89 kcal Atomic # 6 Polarization: -51.71 SS G_CDS: 3.66 Total: -48.05 kcal Atomic # 7 Polarization: -83.74 SS G_CDS: -1.72 Total: -85.46 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 1.69 Total: 44.28 kcal Total: -63.33 1.99 -61.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174274158.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.392 kcal (2) G-P(sol) polarization free energy of solvation -63.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds