Wall clock time and date at job start Wed Apr 15 2020 11:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99939 * 2 1 4 4 H 1.48493 * 109.47322 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46848 * 300.00147 * 3 2 1 6 6 H 1.48506 * 109.47163 * 59.99515 * 3 2 1 7 7 C 1.38806 * 120.00340 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00779 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99838 * 0.02562 * 7 2 1 10 10 C 1.46495 * 119.99888 * 180.02562 * 9 7 2 11 11 H 1.08998 * 112.85167 * 336.19115 * 10 9 7 12 12 C 1.54052 * 113.69874 * 107.46481 * 10 9 7 13 13 C 1.53781 * 86.98687 * 139.98728 * 12 10 9 14 14 H 1.09002 * 113.61445 * 89.16393 * 13 12 10 15 15 N 1.46497 * 113.61305 * 219.98100 * 13 12 10 16 16 C 1.34775 * 120.00126 * 254.13352 * 15 13 12 17 17 O 1.21527 * 119.99662 * 0.02562 * 16 15 13 18 18 C 1.48002 * 120.00247 * 180.02562 * 16 15 13 19 19 C 1.39897 * 120.93959 * 359.72733 * 18 16 15 20 20 C 1.38040 * 119.03632 * 179.73103 * 19 18 16 21 21 N 1.31863 * 120.97825 * 0.55145 * 20 19 18 22 22 C 1.31728 * 122.09245 * 359.71925 * 21 20 19 23 23 C 1.38529 * 120.84608 * 359.97438 * 22 21 20 24 24 F 1.35110 * 120.53505 * 180.02562 * 23 22 21 25 25 C 1.53783 * 113.61332 * 205.00043 * 10 9 7 26 26 H 0.96999 * 120.00271 * 0.02562 * 1 2 3 27 27 H 0.96995 * 119.99799 * 359.97438 * 9 7 2 28 28 H 1.08999 * 113.60931 * 25.48106 * 12 10 9 29 29 H 1.08998 * 113.69722 * 254.50188 * 12 10 9 30 30 H 0.97006 * 120.00058 * 74.13996 * 15 13 12 31 31 H 1.08005 * 120.48413 * 359.97438 * 19 18 16 32 32 H 1.08003 * 119.51411 * 180.27416 * 20 19 18 33 33 H 1.07995 * 119.56905 * 180.02562 * 22 21 20 34 34 H 1.08992 * 113.61796 * 105.38277 * 25 10 9 35 35 H 1.09000 * 113.61157 * 334.47697 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8914 2.3966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0017 11 1 3.0660 -3.5639 -0.4031 12 6 2.0001 -4.4040 1.3475 13 6 1.8495 -5.6978 0.5301 14 1 2.8003 -6.1631 0.2699 15 7 0.8904 -6.6455 1.1029 16 6 1.3308 -7.7576 1.7241 17 8 2.5236 -7.9739 1.8093 18 6 0.3618 -8.7153 2.3022 19 6 -1.0153 -8.4830 2.2203 20 6 -1.8841 -9.4052 2.7682 21 7 -1.4331 -10.4873 3.3719 22 6 -0.1455 -10.7445 3.4777 23 6 0.7977 -9.8771 2.9514 24 9 2.1167 -10.1474 3.0630 25 6 1.2607 -4.8290 -0.5939 26 1 -0.4850 0.8400 -0.0004 27 1 0.3557 -2.3881 0.0005 28 1 1.1215 -4.1601 1.9448 29 1 2.9279 -4.3531 1.9173 30 1 -0.0617 -6.4727 1.0351 31 1 -1.3934 -7.5970 1.7320 32 1 -2.9489 -9.2358 2.7054 33 1 0.1788 -11.6436 3.9804 34 1 1.5920 -5.1209 -1.5904 35 1 0.1804 -4.7011 -0.5264 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021922175.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:41 Heat of formation + Delta-G solvation = -7.347373 kcal Electronic energy + Delta-G solvation = -20595.257905 eV Core-core repulsion = 17123.008830 eV Total energy + Delta-G solvation = -3472.249075 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.20960 -40.78893 -39.59075 -37.96984 -34.34116 -33.40883 -32.32419 -31.30748 -29.90562 -25.80328 -25.22006 -24.43588 -23.80025 -22.30026 -20.80242 -19.63168 -18.38332 -17.65974 -17.56180 -17.12074 -16.23689 -16.14097 -15.78255 -14.93096 -14.78209 -14.55546 -14.54756 -14.09946 -13.77860 -13.73307 -13.11194 -12.94773 -12.52925 -12.25819 -12.01062 -11.33613 -10.99915 -10.81483 -10.57486 -10.50444 -10.36428 -10.35190 -10.07717 -9.85594 -9.66920 -9.43261 -8.99823 -8.89674 -7.04722 -5.85670 -3.14810 0.15843 0.44152 2.59913 2.88284 3.30577 3.38912 3.45414 3.47173 3.53978 3.95066 4.14879 4.22696 4.34018 4.54092 4.86526 4.91890 5.12943 5.15553 5.27839 5.29564 5.32637 5.40585 5.78382 5.83576 6.01936 6.06425 6.16449 6.21797 6.34763 6.53560 6.62085 6.95911 7.28015 7.37678 7.64778 8.00650 8.32755 9.44441 10.00009 10.34505 11.36717 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.035354 B = 0.003096 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.798967 B = 9040.436346 C = 9492.055833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.245 4.245 8 H 0.073 0.927 9 N -0.710 5.710 10 C 0.170 3.830 11 H 0.081 0.919 12 C -0.177 4.177 13 C 0.117 3.883 14 H 0.112 0.888 15 N -0.702 5.702 16 C 0.553 3.447 17 O -0.520 6.520 18 C -0.124 4.124 19 C -0.111 4.111 20 C 0.084 3.916 21 N -0.443 5.443 22 C 0.070 3.930 23 C 0.105 3.895 24 F -0.105 7.105 25 C -0.158 4.158 26 H 0.256 0.744 27 H 0.385 0.615 28 H 0.080 0.920 29 H 0.061 0.939 30 H 0.399 0.601 31 H 0.151 0.849 32 H 0.172 0.828 33 H 0.174 0.826 34 H 0.069 0.931 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.874 -20.249 4.010 21.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.376 4.376 8 H 0.091 0.909 9 N -0.347 5.347 10 C 0.057 3.943 11 H 0.099 0.901 12 C -0.219 4.219 13 C 0.013 3.987 14 H 0.130 0.870 15 N -0.353 5.353 16 C 0.338 3.662 17 O -0.397 6.397 18 C -0.136 4.136 19 C -0.132 4.132 20 C -0.073 4.073 21 N -0.152 5.152 22 C -0.090 4.090 23 C 0.082 3.918 24 F -0.083 7.083 25 C -0.198 4.198 26 H 0.065 0.935 27 H 0.219 0.781 28 H 0.099 0.901 29 H 0.080 0.920 30 H 0.235 0.765 31 H 0.169 0.831 32 H 0.189 0.811 33 H 0.192 0.808 34 H 0.087 0.913 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.419 -20.777 4.386 21.508 hybrid contribution 0.374 1.575 -0.271 1.642 sum -3.044 -19.202 4.115 19.872 Atomic orbital electron populations 1.69662 1.05164 1.25738 1.57490 1.24769 0.95547 0.97854 1.02645 0.86106 0.78881 0.83924 0.77213 1.20440 1.21791 1.21808 1.19364 0.91212 0.84093 1.42945 0.90883 1.42357 1.05688 0.99769 1.86925 1.21388 0.95560 0.84914 0.92479 0.90069 1.24406 1.02022 0.94835 1.00634 1.22615 0.93131 0.87232 0.95770 0.87050 1.45952 1.10693 1.21871 1.56736 1.17925 0.87766 0.81450 0.79054 1.90843 1.15763 1.75441 1.57607 1.20737 0.95199 0.96022 1.01596 1.22400 0.91458 1.00902 0.98424 1.22846 1.01123 0.89260 0.94034 1.67603 1.15159 1.19395 1.13013 1.23003 0.87582 0.99532 0.98854 1.18921 0.79869 0.94680 0.98350 1.91631 1.30484 1.93011 1.93202 1.23873 1.01261 0.97209 0.97425 0.93458 0.78088 0.90134 0.92030 0.76514 0.83138 0.81133 0.80847 0.91256 0.89874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.37 13.06 55.49 0.72 -26.64 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 21.95 29.55 -169.99 -5.02 16.92 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.25 -6.62 9.97 -15.06 -0.15 -6.77 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.71 -16.99 5.41 -52.50 -0.28 -17.27 16 10 C 0.17 3.17 4.48 -66.98 -0.30 2.87 16 11 H 0.08 1.52 8.10 -51.93 -0.42 1.10 16 12 C -0.18 -2.98 7.70 -25.78 -0.20 -3.17 16 13 C 0.12 1.66 4.21 -67.12 -0.28 1.38 16 14 H 0.11 1.67 7.50 -51.93 -0.39 1.28 16 15 N -0.70 -8.54 5.32 -53.91 -0.29 -8.82 16 16 C 0.55 7.60 7.79 -12.26 -0.10 7.51 16 17 O -0.52 -9.17 15.10 5.34 0.08 -9.09 16 18 C -0.12 -1.36 5.91 -104.60 -0.62 -1.98 16 19 C -0.11 -0.85 9.61 -39.03 -0.38 -1.23 16 20 C 0.08 0.60 11.17 -17.61 -0.20 0.40 16 21 N -0.44 -3.98 10.33 -13.24 -0.14 -4.12 16 22 C 0.07 0.61 11.17 -17.49 -0.20 0.42 16 23 C 0.10 1.16 7.33 -38.80 -0.28 0.87 16 24 F -0.11 -1.39 15.72 2.25 0.04 -1.35 16 25 C -0.16 -2.32 7.58 -25.92 -0.20 -2.52 16 26 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 27 H 0.39 9.67 7.92 -40.82 -0.32 9.35 16 28 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.40 3.72 6.85 -40.82 -0.28 3.44 16 31 H 0.15 0.75 6.54 -52.48 -0.34 0.41 16 32 H 0.17 0.69 8.06 -52.48 -0.42 0.27 16 33 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.08 1.18 8.09 -51.93 -0.42 0.76 16 LS Contribution 309.92 15.07 4.67 4.67 Total: -1.00 -32.97 309.92 -7.05 -40.02 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -3.84 Total: 8.33 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -2.99 Total: -2.65 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: 0.02 Total: -56.86 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.08 Total: -9.09 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.97 -7.05 -40.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021922175.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.672 kcal (2) G-P(sol) polarization free energy of solvation -32.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds