Wall clock time and date at job start Wed Apr 15 2020 11:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99939 * 2 1 4 4 H 1.48493 * 109.47322 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46848 * 300.00147 * 3 2 1 6 6 H 1.48506 * 109.47163 * 59.99515 * 3 2 1 7 7 C 1.38806 * 120.00340 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00779 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99838 * 0.02562 * 7 2 1 10 10 C 1.46495 * 119.99888 * 180.02562 * 9 7 2 11 11 H 1.08998 * 112.85167 * 336.19115 * 10 9 7 12 12 C 1.54052 * 113.69874 * 107.46481 * 10 9 7 13 13 C 1.53781 * 86.98687 * 139.98728 * 12 10 9 14 14 H 1.09002 * 113.61445 * 89.16393 * 13 12 10 15 15 N 1.46497 * 113.61305 * 219.98100 * 13 12 10 16 16 C 1.34775 * 120.00126 * 254.13352 * 15 13 12 17 17 O 1.21527 * 119.99662 * 0.02562 * 16 15 13 18 18 C 1.48002 * 120.00247 * 180.02562 * 16 15 13 19 19 C 1.39897 * 120.93959 * 359.72733 * 18 16 15 20 20 C 1.38040 * 119.03632 * 179.73103 * 19 18 16 21 21 N 1.31863 * 120.97825 * 0.55145 * 20 19 18 22 22 C 1.31728 * 122.09245 * 359.71925 * 21 20 19 23 23 C 1.38529 * 120.84608 * 359.97438 * 22 21 20 24 24 F 1.35110 * 120.53505 * 180.02562 * 23 22 21 25 25 C 1.53783 * 113.61332 * 205.00043 * 10 9 7 26 26 H 0.96999 * 120.00271 * 0.02562 * 1 2 3 27 27 H 0.96995 * 119.99799 * 359.97438 * 9 7 2 28 28 H 1.08999 * 113.60931 * 25.48106 * 12 10 9 29 29 H 1.08998 * 113.69722 * 254.50188 * 12 10 9 30 30 H 0.97006 * 120.00058 * 74.13996 * 15 13 12 31 31 H 1.08005 * 120.48413 * 359.97438 * 19 18 16 32 32 H 1.08003 * 119.51411 * 180.27416 * 20 19 18 33 33 H 1.07995 * 119.56905 * 180.02562 * 22 21 20 34 34 H 1.08992 * 113.61796 * 105.38277 * 25 10 9 35 35 H 1.09000 * 113.61157 * 334.47697 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8914 2.3966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0017 11 1 3.0660 -3.5639 -0.4031 12 6 2.0001 -4.4040 1.3475 13 6 1.8495 -5.6978 0.5301 14 1 2.8003 -6.1631 0.2699 15 7 0.8904 -6.6455 1.1029 16 6 1.3308 -7.7576 1.7241 17 8 2.5236 -7.9739 1.8093 18 6 0.3618 -8.7153 2.3022 19 6 -1.0153 -8.4830 2.2203 20 6 -1.8841 -9.4052 2.7682 21 7 -1.4331 -10.4873 3.3719 22 6 -0.1455 -10.7445 3.4777 23 6 0.7977 -9.8771 2.9514 24 9 2.1167 -10.1474 3.0630 25 6 1.2607 -4.8290 -0.5939 26 1 -0.4850 0.8400 -0.0004 27 1 0.3557 -2.3881 0.0005 28 1 1.1215 -4.1601 1.9448 29 1 2.9279 -4.3531 1.9173 30 1 -0.0617 -6.4727 1.0351 31 1 -1.3934 -7.5970 1.7320 32 1 -2.9489 -9.2358 2.7054 33 1 0.1788 -11.6436 3.9804 34 1 1.5920 -5.1209 -1.5904 35 1 0.1804 -4.7011 -0.5264 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021922175.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:40 Heat of formation + Delta-G solvation = -30.908017 kcal Electronic energy + Delta-G solvation = -20596.279571 eV Core-core repulsion = 17123.008830 eV Total energy + Delta-G solvation = -3473.270741 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.07858 -41.66270 -40.59711 -39.26316 -35.86931 -34.73328 -33.43222 -31.98617 -31.71627 -26.94872 -26.55285 -25.91084 -24.67086 -23.58702 -21.90384 -20.96441 -19.46960 -19.00986 -18.45498 -18.34077 -17.37831 -17.09462 -16.77305 -16.22022 -16.17132 -15.84225 -15.41608 -15.21212 -14.96853 -14.71501 -14.50518 -14.34168 -13.67275 -13.32443 -13.21906 -13.14752 -12.86399 -12.24327 -12.20793 -12.07960 -11.82563 -11.56825 -11.40547 -11.13311 -10.88626 -10.69038 -10.15608 -10.07674 -8.99057 -7.95967 -5.23663 -0.62346 -0.20009 1.47986 1.48945 1.58395 1.65069 1.87723 2.56521 2.57179 2.82777 3.31331 3.35947 3.39240 3.54188 3.64568 3.67825 3.81009 3.94584 4.23057 4.28030 4.29181 4.50068 4.62973 4.71900 4.74272 4.87115 4.89025 5.07540 5.13979 5.28847 5.42765 5.50215 5.62209 6.27033 6.35924 6.64678 6.99356 7.34045 8.09026 8.32617 9.27166 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.035354 B = 0.003096 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.798967 B = 9040.436346 C = 9492.055833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.072 4.072 3 Si 0.968 3.032 4 H -0.268 1.268 5 H -0.293 1.293 6 H -0.295 1.295 7 C -0.244 4.244 8 H 0.075 0.925 9 N -0.722 5.722 10 C 0.150 3.850 11 H 0.078 0.922 12 C -0.171 4.171 13 C 0.134 3.866 14 H 0.107 0.893 15 N -0.689 5.689 16 C 0.552 3.448 17 O -0.567 6.567 18 C -0.141 4.141 19 C -0.099 4.099 20 C 0.093 3.907 21 N -0.456 5.456 22 C 0.076 3.924 23 C 0.078 3.922 24 F -0.126 7.126 25 C -0.136 4.136 26 H 0.251 0.749 27 H 0.377 0.623 28 H 0.074 0.926 29 H 0.052 0.948 30 H 0.416 0.584 31 H 0.181 0.819 32 H 0.209 0.791 33 H 0.196 0.804 34 H 0.085 0.915 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.133 -21.149 3.895 22.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.265 4.265 3 Si 0.798 3.202 4 H -0.193 1.193 5 H -0.220 1.220 6 H -0.222 1.222 7 C -0.376 4.376 8 H 0.093 0.907 9 N -0.360 5.360 10 C 0.039 3.961 11 H 0.096 0.904 12 C -0.213 4.213 13 C 0.029 3.971 14 H 0.125 0.875 15 N -0.341 5.341 16 C 0.339 3.661 17 O -0.446 6.446 18 C -0.153 4.153 19 C -0.119 4.119 20 C -0.063 4.063 21 N -0.164 5.164 22 C -0.082 4.082 23 C 0.055 3.945 24 F -0.104 7.104 25 C -0.176 4.176 26 H 0.060 0.940 27 H 0.210 0.790 28 H 0.093 0.907 29 H 0.071 0.929 30 H 0.254 0.746 31 H 0.198 0.802 32 H 0.225 0.775 33 H 0.212 0.788 34 H 0.104 0.896 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.674 -21.725 4.272 22.629 hybrid contribution 0.729 1.772 -0.212 1.928 sum -3.946 -19.952 4.060 20.740 Atomic orbital electron populations 1.69790 1.06415 1.26008 1.59495 1.25498 0.96379 1.00887 1.03721 0.85145 0.78278 0.80151 0.76625 1.19263 1.21979 1.22215 1.19717 0.91540 0.85411 1.40976 0.90715 1.42483 1.05438 1.00694 1.87383 1.21704 0.95844 0.84218 0.94335 0.90355 1.24240 1.01354 0.96130 0.99601 1.22248 0.93530 0.86660 0.94657 0.87538 1.45749 1.11256 1.21016 1.56039 1.18340 0.87665 0.81738 0.78346 1.90819 1.17883 1.76510 1.59381 1.20651 0.96083 0.95713 1.02805 1.22720 0.89773 1.01837 0.97565 1.23500 1.02751 0.88023 0.92061 1.67710 1.14908 1.20286 1.13503 1.23289 0.87199 0.99650 0.98091 1.19250 0.79466 0.95764 0.99987 1.91572 1.32005 1.93266 1.93594 1.23667 1.01316 0.94438 0.98144 0.93974 0.79038 0.90714 0.92945 0.74554 0.80193 0.77464 0.78753 0.89633 0.88786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.17 13.06 21.65 0.28 -56.88 16 2 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 3 Si 0.97 45.25 29.55 68.60 2.03 47.28 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 5 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 6 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 7 C -0.24 -13.18 9.97 84.03 0.84 -12.34 16 8 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 9 N -0.72 -34.43 5.41 -320.02 -1.73 -36.16 16 10 C 0.15 5.48 4.48 45.61 0.20 5.69 16 11 H 0.08 2.90 8.10 -2.39 -0.02 2.88 16 12 C -0.17 -5.66 7.70 31.21 0.24 -5.42 16 13 C 0.13 3.64 4.21 45.52 0.19 3.83 16 14 H 0.11 3.10 7.50 -2.39 -0.02 3.08 16 15 N -0.69 -15.47 5.32 -442.76 -2.36 -17.82 16 16 C 0.55 14.73 7.79 86.83 0.68 15.41 16 17 O -0.57 -20.20 15.10 -3.80 -0.06 -20.25 16 18 C -0.14 -2.90 5.91 -19.85 -0.12 -3.02 16 19 C -0.10 -1.20 9.61 22.62 0.22 -0.98 16 20 C 0.09 0.99 11.17 84.64 0.95 1.94 16 21 N -0.46 -6.96 10.33 -195.82 -2.02 -8.98 16 22 C 0.08 1.22 11.17 84.78 0.95 2.17 16 23 C 0.08 1.69 7.33 22.78 0.17 1.86 16 24 F -0.13 -3.42 15.72 44.97 0.71 -2.72 16 25 C -0.14 -3.73 7.58 31.12 0.24 -3.49 16 26 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 27 H 0.38 18.93 7.92 -92.71 -0.73 18.19 16 28 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 29 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.42 6.49 6.85 -92.70 -0.64 5.85 16 31 H 0.18 1.01 6.54 -2.91 -0.02 0.99 16 32 H 0.21 0.63 8.06 -2.91 -0.02 0.61 16 33 H 0.20 2.07 8.06 -2.91 -0.02 2.05 16 34 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.09 2.42 8.09 -2.39 -0.02 2.40 16 Total: -1.00 -72.31 309.92 1.64 -70.67 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: -0.22 Total: 22.82 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: 5.01 Total: 2.05 kcal Atomic # 7 Polarization: -114.02 SS G_CDS: -5.83 Total: -119.85 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.06 Total: -20.25 kcal Atomic # 9 Polarization: -3.42 SS G_CDS: 0.71 Total: -2.72 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -72.31 1.64 -70.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021922175.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.759 kcal (2) G-P(sol) polarization free energy of solvation -72.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds