Wall clock time and date at job start Wed Apr 15 2020 11:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99738 * 2 1 4 4 H 1.48509 * 109.46839 * 274.98972 * 3 2 1 5 5 H 1.48499 * 109.47175 * 34.98719 * 3 2 1 6 6 H 1.48493 * 109.47205 * 154.98902 * 3 2 1 7 7 C 1.38810 * 120.00633 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00424 * 185.06213 * 7 2 1 9 9 N 1.36940 * 119.99760 * 5.06420 * 7 2 1 10 10 C 1.47582 * 134.49495 * 173.48104 * 9 7 2 11 11 C 1.53943 * 86.11607 * 155.35773 * 10 9 7 12 12 N 1.46502 * 113.74043 * 137.95355 * 11 10 9 13 13 C 1.34776 * 120.00088 * 156.92259 * 12 11 10 14 14 O 1.21285 * 119.99728 * 0.02562 * 13 12 11 15 15 C 1.50700 * 120.00515 * 180.02562 * 13 12 11 16 16 C 1.50693 * 109.47586 * 180.02562 * 15 13 12 17 17 N 1.31873 * 119.63388 * 269.97897 * 16 15 13 18 18 C 1.31851 * 121.74745 * 179.68025 * 17 16 15 19 19 C 1.38238 * 120.81923 * 0.62772 * 18 17 16 20 20 C 1.38587 * 119.18915 * 359.40821 * 19 18 17 21 21 C 1.38423 * 119.63716 * 89.99316 * 16 15 13 22 22 F 1.35095 * 120.44298 * 359.97438 * 21 16 15 23 23 C 1.47820 * 134.45491 * 353.34809 * 9 7 2 24 24 H 0.96996 * 120.00396 * 359.97438 * 1 2 3 25 25 H 1.08998 * 113.76705 * 41.05535 * 10 9 7 26 26 H 1.08999 * 113.76510 * 269.65844 * 10 9 7 27 27 H 1.09006 * 113.74054 * 269.15283 * 11 10 9 28 28 H 0.96997 * 120.00514 * 336.92193 * 12 11 10 29 29 H 1.08997 * 109.47338 * 59.99199 * 15 13 12 30 30 H 1.08999 * 109.46569 * 299.99827 * 15 13 12 31 31 H 1.08000 * 119.58690 * 180.31257 * 18 17 16 32 32 H 1.07995 * 120.40402 * 179.67697 * 19 18 17 33 33 H 1.08001 * 120.80116 * 180.29880 * 20 19 18 34 34 H 1.08998 * 113.77168 * 90.37815 * 23 9 7 35 35 H 1.08998 * 113.83220 * 318.91524 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3921 2.1074 -1.3949 5 1 1.5042 2.6200 0.8028 6 1 3.5964 1.4122 0.5919 7 6 2.0104 -1.2021 0.0005 8 1 3.0872 -1.2038 0.0831 9 7 1.3297 -2.3858 -0.1036 10 6 1.7289 -3.7985 -0.2550 11 6 0.3712 -4.1416 0.3845 12 7 -0.3172 -5.2634 -0.2590 13 6 -1.2385 -5.9704 0.4249 14 8 -1.4981 -5.6776 1.5729 15 6 -1.9463 -7.1247 -0.2367 16 6 -2.9189 -7.7413 0.7351 17 7 -2.5209 -8.7212 1.5228 18 6 -3.3349 -9.2865 2.3925 19 6 -4.6505 -8.8764 2.5013 20 6 -5.1076 -7.8494 1.6908 21 6 -4.2204 -7.2732 0.7911 22 9 -4.6219 -6.2689 -0.0184 23 6 -0.1000 -2.7610 -0.1071 24 1 -0.4850 0.8400 0.0004 25 1 2.5862 -4.0807 0.3561 26 1 1.8198 -4.1206 -1.2923 27 1 0.4078 -4.2319 1.4702 28 1 -0.1099 -5.4973 -1.1772 29 1 -1.2145 -7.8723 -0.5428 30 1 -2.4867 -6.7655 -1.1125 31 1 -2.9705 -10.0832 3.0241 32 1 -5.3128 -9.3476 3.2124 33 1 -6.1291 -7.5052 1.7575 34 1 -0.5475 -2.7777 -1.1009 35 1 -0.7001 -2.2164 0.6219 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030845701.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:42 Heat of formation + Delta-G solvation = -13.647212 kcal Electronic energy + Delta-G solvation = -20865.113188 eV Core-core repulsion = 17392.590932 eV Total energy + Delta-G solvation = -3472.522256 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.03529 -41.40262 -40.62012 -39.15367 -35.15858 -34.27606 -33.70933 -32.82953 -29.96037 -28.83841 -26.64139 -25.25027 -24.55744 -23.66120 -21.56055 -21.32993 -18.79082 -18.72032 -18.29710 -18.19201 -17.65032 -16.98762 -16.91965 -16.67094 -16.06154 -15.73471 -15.19028 -14.91174 -14.77604 -14.61136 -14.18499 -14.05430 -13.68475 -13.39071 -13.25518 -13.12596 -12.92327 -12.80886 -12.63206 -12.29942 -11.95729 -11.53439 -11.10228 -10.90520 -10.79023 -10.61417 -9.98024 -9.85253 -8.98304 -7.94926 -5.29790 -0.10590 0.11150 1.44682 1.47187 1.56461 1.61397 2.10035 2.47265 2.70997 3.01809 3.22639 3.24833 3.39000 3.58131 3.76490 3.83234 3.91813 4.00818 4.30996 4.36539 4.43696 4.51418 4.58841 4.74514 4.74932 4.89800 4.93868 5.03186 5.16994 5.19835 5.45759 5.64537 5.68396 5.86707 6.58833 6.84304 6.85826 7.27740 7.55991 8.49694 9.22683 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.035795 B = 0.003388 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.036159 B = 8262.604487 C = 8610.673586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.069 4.069 3 Si 0.983 3.017 4 H -0.284 1.284 5 H -0.296 1.296 6 H -0.263 1.263 7 C -0.237 4.237 8 H 0.091 0.909 9 N -0.639 5.639 10 C 0.124 3.876 11 C 0.120 3.880 12 N -0.700 5.700 13 C 0.518 3.482 14 O -0.587 6.587 15 C -0.089 4.089 16 C 0.102 3.898 17 N -0.475 5.475 18 C 0.083 3.917 19 C -0.134 4.134 20 C -0.113 4.113 21 C 0.032 3.968 22 F -0.139 7.139 23 C 0.155 3.845 24 H 0.249 0.751 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.419 0.581 29 H 0.146 0.854 30 H 0.133 0.867 31 H 0.195 0.805 32 H 0.186 0.814 33 H 0.170 0.830 34 H 0.028 0.972 35 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.781 -22.297 -0.172 23.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.262 4.262 3 Si 0.811 3.189 4 H -0.211 1.211 5 H -0.223 1.223 6 H -0.188 1.188 7 C -0.365 4.365 8 H 0.109 0.891 9 N -0.367 5.367 10 C -0.002 4.002 11 C 0.013 3.987 12 N -0.352 5.352 13 C 0.305 3.695 14 O -0.467 6.467 15 C -0.129 4.129 16 C -0.036 4.036 17 N -0.184 5.184 18 C -0.074 4.074 19 C -0.153 4.153 20 C -0.139 4.139 21 C 0.011 3.989 22 F -0.118 7.118 23 C 0.028 3.972 24 H 0.058 0.942 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.106 0.894 28 H 0.256 0.744 29 H 0.164 0.836 30 H 0.151 0.849 31 H 0.211 0.789 32 H 0.203 0.797 33 H 0.188 0.812 34 H 0.046 0.954 35 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -8.042 -22.019 0.561 23.448 hybrid contribution -0.674 1.839 -0.510 2.025 sum -8.716 -20.179 0.051 21.981 Atomic orbital electron populations 1.70058 1.06773 1.25787 1.57702 1.25765 0.96552 1.01316 1.02574 0.84992 0.77881 0.78675 0.77375 1.21129 1.22330 1.18772 1.19453 0.91437 0.82960 1.42681 0.89099 1.46042 1.03276 1.02181 1.85180 1.23011 0.94926 0.83210 0.99013 1.23160 0.93244 0.84589 0.97669 1.45807 1.40355 1.31689 1.17347 1.20900 0.79229 0.83291 0.86116 1.90697 1.65449 1.70485 1.20041 1.20609 0.98713 0.96155 0.97394 1.20794 0.91125 0.94469 0.97250 1.67489 1.37805 1.08187 1.04887 1.23478 0.90603 0.98670 0.94698 1.22521 0.97583 0.95962 0.99227 1.22061 1.01398 0.96477 0.93994 1.18889 0.95307 0.89927 0.94816 1.91493 1.90967 1.58230 1.71094 1.22539 0.87304 0.90435 0.96933 0.94242 0.91712 0.91306 0.89396 0.74388 0.83628 0.84899 0.78855 0.79658 0.81222 0.95385 0.95607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.90 11.51 21.65 0.25 -59.65 16 2 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 3 Si 0.98 46.51 29.56 68.60 2.03 48.54 16 4 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 5 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 6 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.24 -13.54 10.70 84.03 0.90 -12.65 16 8 H 0.09 4.88 7.83 -2.91 -0.02 4.85 16 9 N -0.64 -33.52 3.70 -716.71 -2.65 -36.17 16 10 C 0.12 4.80 8.69 86.48 0.75 5.55 16 11 C 0.12 4.77 4.40 46.75 0.21 4.98 16 12 N -0.70 -21.09 5.37 -447.39 -2.40 -23.49 16 13 C 0.52 16.63 7.82 87.66 0.69 17.31 16 14 O -0.59 -24.92 15.66 -3.05 -0.05 -24.97 16 15 C -0.09 -2.00 5.82 29.10 0.17 -1.83 16 16 C 0.10 2.63 5.28 42.59 0.22 2.86 16 17 N -0.47 -11.58 10.27 -183.71 -1.89 -13.46 16 18 C 0.08 1.41 11.18 84.69 0.95 2.36 16 19 C -0.13 -1.81 10.11 22.35 0.23 -1.58 16 20 C -0.11 -2.03 10.16 22.51 0.23 -1.80 16 21 C 0.03 0.80 7.27 22.47 0.16 0.97 16 22 F -0.14 -3.83 16.49 44.97 0.74 -3.09 16 23 C 0.15 7.79 7.24 86.44 0.63 8.42 16 24 H 0.25 15.14 8.31 -92.71 -0.77 14.36 16 25 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 26 H 0.07 2.29 8.11 -2.39 -0.02 2.27 16 27 H 0.09 3.94 7.51 -2.38 -0.02 3.92 16 28 H 0.42 9.16 8.71 -92.71 -0.81 8.35 16 29 H 0.15 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.13 2.40 7.63 -2.39 -0.02 2.38 16 31 H 0.19 1.86 8.06 -2.91 -0.02 1.84 16 32 H 0.19 0.89 8.06 -2.91 -0.02 0.87 16 33 H 0.17 2.12 8.06 -2.91 -0.02 2.09 16 34 H 0.03 1.41 8.14 -2.39 -0.02 1.40 16 35 H 0.03 1.51 7.37 -2.39 -0.02 1.50 16 Total: -1.00 -81.55 312.11 1.94 -79.62 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 0.32 Total: 11.68 kcal Atomic # 6 Polarization: 15.42 SS G_CDS: 5.59 Total: 21.01 kcal Atomic # 7 Polarization: -126.08 SS G_CDS: -6.69 Total: -132.78 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.05 Total: -24.97 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 0.74 Total: -3.09 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -81.55 1.94 -79.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030845701.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.969 kcal (2) G-P(sol) polarization free energy of solvation -81.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds