Wall clock time and date at job start Wed Apr 15 2020 11:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99352 * 2 1 4 4 H 1.48502 * 109.47562 * 274.98697 * 3 2 1 5 5 H 1.48495 * 109.47389 * 34.98863 * 3 2 1 6 6 H 1.48509 * 109.46878 * 154.98794 * 3 2 1 7 7 C 1.38810 * 120.00555 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00115 * 185.05551 * 7 2 1 9 9 N 1.36935 * 119.99747 * 5.05505 * 7 2 1 10 10 C 1.47069 * 136.05961 * 353.51213 * 9 7 2 11 11 C 1.53494 * 87.98715 * 207.15658 * 10 9 7 12 12 C 1.47074 * 136.05601 * 173.56921 * 9 7 2 13 13 H 1.08997 * 113.46249 * 267.68431 * 12 9 7 14 14 C 1.52996 * 113.46543 * 38.06036 * 12 9 7 15 15 N 1.46503 * 109.47346 * 285.49574 * 14 12 9 16 16 C 1.34770 * 119.99868 * 180.02562 * 15 14 12 17 17 O 1.21537 * 120.00664 * 359.97438 * 16 15 14 18 18 C 1.48004 * 119.99764 * 179.97438 * 16 15 14 19 19 N 1.32806 * 119.75137 * 359.72764 * 18 16 15 20 20 C 1.31428 * 121.66644 * 179.74738 * 19 18 16 21 21 C 1.38684 * 120.97893 * 0.52974 * 20 19 18 22 22 C 1.38453 * 119.39586 * 359.73869 * 21 20 19 23 23 C 1.38959 * 118.46664 * 0.02562 * 22 21 20 24 24 F 1.35097 * 120.50381 * 179.97438 * 23 22 21 25 25 H 0.96996 * 120.00448 * 359.97438 * 1 2 3 26 26 H 1.08998 * 113.46884 * 321.94004 * 10 9 7 27 27 H 1.09000 * 113.46105 * 92.37875 * 10 9 7 28 28 H 1.08993 * 114.20955 * 220.34796 * 11 10 9 29 29 H 1.09000 * 114.20372 * 87.51835 * 11 10 9 30 30 H 1.08997 * 109.47317 * 45.50124 * 14 12 9 31 31 H 1.09007 * 109.46719 * 165.49499 * 14 12 9 32 32 H 0.96999 * 119.99770 * 359.97438 * 15 14 12 33 33 H 1.07995 * 119.51450 * 180.24635 * 20 19 18 34 34 H 1.08003 * 120.30219 * 179.76163 * 21 20 19 35 35 H 1.08000 * 120.76361 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.3921 2.1075 -1.3948 5 1 1.5041 2.6200 0.8028 6 1 3.5964 1.4122 0.5920 7 6 2.0104 -1.2021 -0.0005 8 1 3.0872 -1.2038 0.0819 9 7 1.3298 -2.3856 -0.1056 10 6 -0.0818 -2.7981 -0.1164 11 6 0.3670 -4.1565 0.4400 12 6 1.6888 -3.8039 -0.2562 13 1 1.7346 -4.1320 -1.2946 14 6 2.9270 -4.2075 0.5468 15 7 4.1273 -3.6845 -0.1106 16 6 5.3431 -3.9183 0.4216 17 8 5.4440 -4.5626 1.4472 18 6 6.5557 -3.3904 -0.2428 19 7 6.4403 -2.6916 -1.3662 20 6 7.4911 -2.2012 -1.9848 21 6 8.7705 -2.4056 -1.4902 22 6 8.9402 -3.1328 -0.3243 23 6 7.8123 -3.6360 0.3126 24 9 7.9302 -4.3516 1.4524 25 1 -0.4850 0.8400 0.0004 26 1 -0.7052 -2.2306 0.5745 27 1 -0.5086 -2.8587 -1.1175 28 1 -0.1525 -5.0108 0.0063 29 1 0.4311 -4.1949 1.5274 30 1 2.8565 -3.7973 1.5541 31 1 2.9866 -5.2946 0.6006 32 1 4.0468 -3.1706 -0.9294 33 1 7.3567 -1.6346 -2.8943 34 1 9.6266 -2.0009 -2.0095 35 1 9.9265 -3.3057 0.0804 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038843328.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:47 Heat of formation + Delta-G solvation = 19.192950 kcal Electronic energy + Delta-G solvation = -21403.311797 eV Core-core repulsion = 17932.213597 eV Total energy + Delta-G solvation = -3471.098200 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.99891 -40.47363 -38.97527 -37.95821 -34.12937 -32.80687 -32.18094 -31.23877 -28.10171 -27.67463 -24.84332 -23.64014 -23.44691 -21.98356 -20.55929 -19.30543 -18.16974 -17.69776 -17.27838 -16.55276 -16.06252 -15.55270 -15.39236 -15.21040 -14.52124 -14.30592 -14.01975 -13.73388 -13.49117 -13.35206 -13.18582 -12.85650 -12.57426 -11.88830 -11.53990 -11.07714 -10.97226 -10.77219 -10.55350 -10.28779 -10.22144 -9.97279 -9.82609 -9.63898 -9.22450 -9.17502 -8.79861 -8.53592 -6.86948 -5.76521 -3.07848 0.35498 0.78895 2.78115 3.25426 3.39180 3.44625 3.46487 3.68519 3.86784 4.04944 4.38694 4.45085 4.55902 4.64838 5.08650 5.22071 5.38703 5.43300 5.50764 5.58066 5.61674 5.75183 5.93653 6.09844 6.27625 6.33157 6.41900 6.61135 6.72646 6.87059 7.25653 7.39686 7.42359 7.60277 7.90955 7.98965 8.47090 9.05327 9.71890 10.65034 11.41338 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016419 B = 0.005678 C = 0.004610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.972244 B = 4930.523147 C = 6072.536448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.006 4.006 3 Si 0.906 3.094 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.212 4.212 8 H 0.082 0.918 9 N -0.601 5.601 10 C 0.154 3.846 11 C -0.161 4.161 12 C 0.126 3.874 13 H 0.050 0.950 14 C 0.119 3.881 15 N -0.687 5.687 16 C 0.560 3.440 17 O -0.534 6.534 18 C 0.055 3.945 19 N -0.426 5.426 20 C 0.089 3.911 21 C -0.125 4.125 22 C -0.121 4.121 23 C 0.106 3.894 24 F -0.106 7.106 25 H 0.253 0.747 26 H 0.068 0.932 27 H 0.027 0.973 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.415 0.585 33 H 0.171 0.829 34 H 0.150 0.850 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.908 -7.072 -4.438 17.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.203 4.203 3 Si 0.736 3.264 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.340 4.340 8 H 0.099 0.901 9 N -0.327 5.327 10 C 0.029 3.971 11 C -0.200 4.200 12 C 0.019 3.981 13 H 0.067 0.933 14 C -0.005 4.005 15 N -0.337 5.337 16 C 0.344 3.656 17 O -0.411 6.411 18 C -0.085 4.085 19 N -0.137 5.137 20 C -0.072 4.072 21 C -0.145 4.145 22 C -0.147 4.147 23 C 0.083 3.917 24 F -0.084 7.084 25 H 0.063 0.937 26 H 0.086 0.914 27 H 0.045 0.955 28 H 0.077 0.923 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.251 0.749 33 H 0.188 0.812 34 H 0.167 0.833 35 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 14.108 -7.061 -3.941 16.262 hybrid contribution 1.386 1.103 -0.074 1.773 sum 15.494 -5.958 -4.015 17.079 Atomic orbital electron populations 1.69846 1.04991 1.25265 1.56292 1.24796 0.95618 0.97388 1.02501 0.86184 0.78806 0.83887 0.77478 1.21609 1.21758 1.20664 1.18895 0.90608 0.81400 1.43078 0.90064 1.45678 1.02576 0.99962 1.84442 1.21975 0.88598 0.89071 0.97493 1.23678 0.96943 0.98984 1.00401 1.22430 0.91747 0.87729 0.96240 0.93302 1.21920 0.83237 0.97525 0.97845 1.45811 1.05008 1.53954 1.28931 1.17659 0.82926 0.80774 0.84270 1.90820 1.86347 1.40564 1.23353 1.21590 0.93084 0.99635 0.94162 1.67710 1.34332 1.05889 1.05732 1.22963 0.87473 0.97102 0.99644 1.22302 0.99587 0.97237 0.95370 1.21696 0.98586 0.98245 0.96216 1.18676 0.94027 0.94141 0.84830 1.91619 1.96475 1.74331 1.45988 0.93715 0.91357 0.95547 0.92272 0.90181 0.90815 0.91925 0.74875 0.81165 0.83252 0.82934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.16 11.62 55.49 0.65 -26.52 16 2 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 3 Si 0.91 22.31 29.56 -169.99 -5.02 17.28 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.21 -5.82 10.54 -15.06 -0.16 -5.98 16 8 H 0.08 2.18 7.61 -52.49 -0.40 1.79 16 9 N -0.60 -14.87 3.65 -176.97 -0.65 -15.52 16 10 C 0.15 3.56 7.31 -8.50 -0.06 3.50 16 11 C -0.16 -2.95 8.03 -26.22 -0.21 -3.16 16 12 C 0.13 2.49 4.10 -72.39 -0.30 2.19 16 13 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 14 C 0.12 2.24 5.52 -4.04 -0.02 2.22 16 15 N -0.69 -12.84 5.32 -61.20 -0.33 -13.17 16 16 C 0.56 10.59 7.81 -12.26 -0.10 10.49 16 17 O -0.53 -11.35 15.32 5.33 0.08 -11.27 16 18 C 0.05 0.88 6.75 -82.95 -0.56 0.32 16 19 N -0.43 -6.15 9.54 -9.76 -0.09 -6.25 16 20 C 0.09 0.90 11.18 -17.56 -0.20 0.71 16 21 C -0.12 -0.99 10.11 -39.34 -0.40 -1.39 16 22 C -0.12 -1.16 10.16 -39.23 -0.40 -1.56 16 23 C 0.11 1.49 7.32 -38.82 -0.28 1.20 16 24 F -0.11 -1.68 15.55 2.25 0.04 -1.64 16 25 H 0.25 7.28 8.31 -40.82 -0.34 6.95 16 26 H 0.07 1.75 7.31 -51.93 -0.38 1.37 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.08 1.45 8.12 -51.93 -0.42 1.03 16 30 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 31 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 32 H 0.41 7.73 7.80 -40.82 -0.32 7.41 16 33 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.15 0.61 8.06 -52.48 -0.42 0.18 16 35 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 310.24 15.07 4.68 4.68 Total: -1.00 -33.53 310.24 -7.47 -41.00 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -4.04 Total: 3.14 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: -2.78 Total: 8.27 kcal Atomic # 7 Polarization: -61.03 SS G_CDS: -0.42 Total: -61.45 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.08 Total: -11.27 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.53 -7.47 -41.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038843328.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.189 kcal (2) G-P(sol) polarization free energy of solvation -33.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds