Wall clock time and date at job start Wed Apr 15 2020 11:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99352 * 2 1 4 4 H 1.48502 * 109.47562 * 274.98697 * 3 2 1 5 5 H 1.48495 * 109.47389 * 34.98863 * 3 2 1 6 6 H 1.48509 * 109.46878 * 154.98794 * 3 2 1 7 7 C 1.38810 * 120.00555 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00115 * 185.05551 * 7 2 1 9 9 N 1.36935 * 119.99747 * 5.05505 * 7 2 1 10 10 C 1.47069 * 136.05961 * 353.51213 * 9 7 2 11 11 C 1.53494 * 87.98715 * 207.15658 * 10 9 7 12 12 C 1.47074 * 136.05601 * 173.56921 * 9 7 2 13 13 H 1.08997 * 113.46249 * 267.68431 * 12 9 7 14 14 C 1.52996 * 113.46543 * 38.06036 * 12 9 7 15 15 N 1.46503 * 109.47346 * 285.49574 * 14 12 9 16 16 C 1.34770 * 119.99868 * 180.02562 * 15 14 12 17 17 O 1.21537 * 120.00664 * 359.97438 * 16 15 14 18 18 C 1.48004 * 119.99764 * 179.97438 * 16 15 14 19 19 N 1.32806 * 119.75137 * 359.72764 * 18 16 15 20 20 C 1.31428 * 121.66644 * 179.74738 * 19 18 16 21 21 C 1.38684 * 120.97893 * 0.52974 * 20 19 18 22 22 C 1.38453 * 119.39586 * 359.73869 * 21 20 19 23 23 C 1.38959 * 118.46664 * 0.02562 * 22 21 20 24 24 F 1.35097 * 120.50381 * 179.97438 * 23 22 21 25 25 H 0.96996 * 120.00448 * 359.97438 * 1 2 3 26 26 H 1.08998 * 113.46884 * 321.94004 * 10 9 7 27 27 H 1.09000 * 113.46105 * 92.37875 * 10 9 7 28 28 H 1.08993 * 114.20955 * 220.34796 * 11 10 9 29 29 H 1.09000 * 114.20372 * 87.51835 * 11 10 9 30 30 H 1.08997 * 109.47317 * 45.50124 * 14 12 9 31 31 H 1.09007 * 109.46719 * 165.49499 * 14 12 9 32 32 H 0.96999 * 119.99770 * 359.97438 * 15 14 12 33 33 H 1.07995 * 119.51450 * 180.24635 * 20 19 18 34 34 H 1.08003 * 120.30219 * 179.76163 * 21 20 19 35 35 H 1.08000 * 120.76361 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.3921 2.1075 -1.3948 5 1 1.5041 2.6200 0.8028 6 1 3.5964 1.4122 0.5920 7 6 2.0104 -1.2021 -0.0005 8 1 3.0872 -1.2038 0.0819 9 7 1.3298 -2.3856 -0.1056 10 6 -0.0818 -2.7981 -0.1164 11 6 0.3670 -4.1565 0.4400 12 6 1.6888 -3.8039 -0.2562 13 1 1.7346 -4.1320 -1.2946 14 6 2.9270 -4.2075 0.5468 15 7 4.1273 -3.6845 -0.1106 16 6 5.3431 -3.9183 0.4216 17 8 5.4440 -4.5626 1.4472 18 6 6.5557 -3.3904 -0.2428 19 7 6.4403 -2.6916 -1.3662 20 6 7.4911 -2.2012 -1.9848 21 6 8.7705 -2.4056 -1.4902 22 6 8.9402 -3.1328 -0.3243 23 6 7.8123 -3.6360 0.3126 24 9 7.9302 -4.3516 1.4524 25 1 -0.4850 0.8400 0.0004 26 1 -0.7052 -2.2306 0.5745 27 1 -0.5086 -2.8587 -1.1175 28 1 -0.1525 -5.0108 0.0063 29 1 0.4311 -4.1949 1.5274 30 1 2.8565 -3.7973 1.5541 31 1 2.9866 -5.2946 0.6006 32 1 4.0468 -3.1706 -0.9294 33 1 7.3567 -1.6346 -2.8943 34 1 9.6266 -2.0009 -2.0095 35 1 9.9265 -3.3057 0.0804 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038843328.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:46 Heat of formation + Delta-G solvation = -5.086916 kcal Electronic energy + Delta-G solvation = -21404.364651 eV Core-core repulsion = 17932.213597 eV Total energy + Delta-G solvation = -3472.151054 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.07826 -41.54301 -40.37594 -39.56184 -35.64152 -34.27880 -33.65732 -32.20591 -29.98563 -29.26768 -25.91906 -25.39733 -24.56771 -23.50065 -21.92291 -21.04056 -19.49133 -18.71563 -18.42906 -18.17483 -17.28128 -16.99039 -16.83731 -16.56337 -16.11307 -15.74617 -15.43908 -15.00787 -14.89025 -14.64056 -14.34841 -14.15858 -13.63644 -13.49300 -13.37943 -12.95516 -12.71656 -12.61759 -12.32183 -11.90018 -11.68126 -11.52647 -11.07530 -11.03358 -10.85767 -10.64157 -10.27678 -9.97376 -8.88347 -7.89482 -5.20127 -0.60327 -0.02587 1.42164 1.43328 1.51820 1.59755 1.99807 2.46392 2.63881 2.88065 3.07078 3.31419 3.44193 3.59936 3.66508 3.86933 3.92427 4.10080 4.32142 4.35894 4.54843 4.61071 4.68023 4.78633 4.87399 4.89802 5.05171 5.07243 5.32024 5.36853 5.48912 5.57977 5.72617 5.96217 6.33516 6.64876 6.93996 7.04468 7.63043 8.63574 9.28727 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016419 B = 0.005678 C = 0.004610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.972244 B = 4930.523147 C = 6072.536448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.068 4.068 3 Si 0.967 3.033 4 H -0.283 1.283 5 H -0.297 1.297 6 H -0.276 1.276 7 C -0.208 4.208 8 H 0.080 0.920 9 N -0.629 5.629 10 C 0.147 3.853 11 C -0.132 4.132 12 C 0.131 3.869 13 H 0.068 0.932 14 C 0.127 3.873 15 N -0.690 5.690 16 C 0.554 3.446 17 O -0.570 6.570 18 C 0.017 3.983 19 N -0.456 5.456 20 C 0.084 3.916 21 C -0.092 4.092 22 C -0.110 4.110 23 C 0.084 3.916 24 F -0.126 7.126 25 H 0.246 0.754 26 H 0.033 0.967 27 H 0.024 0.976 28 H 0.102 0.898 29 H 0.081 0.919 30 H 0.046 0.954 31 H 0.084 0.916 32 H 0.414 0.586 33 H 0.204 0.796 34 H 0.204 0.796 35 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.729 -7.162 -6.081 20.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.261 4.261 3 Si 0.797 3.203 4 H -0.210 1.210 5 H -0.224 1.224 6 H -0.201 1.201 7 C -0.336 4.336 8 H 0.098 0.902 9 N -0.355 5.355 10 C 0.021 3.979 11 C -0.171 4.171 12 C 0.025 3.975 13 H 0.085 0.915 14 C 0.002 3.998 15 N -0.339 5.339 16 C 0.340 3.660 17 O -0.450 6.450 18 C -0.120 4.120 19 N -0.168 5.168 20 C -0.077 4.077 21 C -0.112 4.112 22 C -0.136 4.136 23 C 0.061 3.939 24 F -0.104 7.104 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.042 0.958 28 H 0.120 0.880 29 H 0.099 0.901 30 H 0.064 0.936 31 H 0.102 0.898 32 H 0.251 0.749 33 H 0.220 0.780 34 H 0.221 0.779 35 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 16.942 -7.187 -5.590 19.234 hybrid contribution 0.624 1.116 0.342 1.323 sum 17.566 -6.072 -5.248 19.312 Atomic orbital electron populations 1.70017 1.06244 1.25319 1.58475 1.25541 0.96450 1.00461 1.03649 0.85214 0.77624 0.80074 0.77425 1.20969 1.22391 1.20072 1.19139 0.90750 0.82694 1.41009 0.90240 1.45984 1.03724 1.01229 1.84599 1.21996 0.87565 0.91448 0.96877 1.23495 0.95440 0.97673 1.00458 1.22580 0.92806 0.84783 0.97321 0.91458 1.21750 0.83297 0.98553 0.96167 1.45807 1.05141 1.54066 1.28845 1.18214 0.83855 0.80032 0.83895 1.90774 1.87039 1.42245 1.24916 1.21145 0.92365 1.02603 0.95925 1.67628 1.36702 1.06750 1.05677 1.23709 0.87659 0.96194 1.00145 1.22894 1.00248 0.94210 0.93803 1.22170 0.98501 0.96881 0.96081 1.19078 0.94953 0.95008 0.84830 1.91561 1.96565 1.75077 1.47228 0.94457 0.94809 0.95806 0.87961 0.90066 0.93596 0.89779 0.74945 0.77958 0.77888 0.79355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.01 11.62 21.65 0.25 -57.76 16 2 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 3 Si 0.97 46.69 29.56 68.60 2.03 48.72 16 4 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 5 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 6 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 7 C -0.21 -11.56 10.54 84.03 0.89 -10.67 16 8 H 0.08 4.35 7.61 -2.91 -0.02 4.33 16 9 N -0.63 -31.52 3.65 -713.82 -2.60 -34.13 16 10 C 0.15 6.85 7.31 83.18 0.61 7.45 16 11 C -0.13 -4.64 8.03 30.93 0.25 -4.40 16 12 C 0.13 5.08 4.10 41.79 0.17 5.25 16 13 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 14 C 0.13 4.78 5.52 86.38 0.48 5.26 16 15 N -0.69 -26.21 5.32 -465.82 -2.48 -28.69 16 16 C 0.55 21.60 7.81 86.83 0.68 22.28 16 17 O -0.57 -25.23 15.32 -3.83 -0.06 -25.29 16 18 C 0.02 0.54 6.75 41.91 0.28 0.82 16 19 N -0.46 -12.65 9.54 -184.78 -1.76 -14.42 16 20 C 0.08 1.42 11.18 84.86 0.95 2.36 16 21 C -0.09 -0.98 10.11 22.43 0.23 -0.76 16 22 C -0.11 -1.71 10.16 22.49 0.23 -1.48 16 23 C 0.08 2.30 7.32 22.76 0.17 2.47 16 24 F -0.13 -4.05 15.55 44.97 0.70 -3.35 16 25 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 26 H 0.03 1.79 7.31 -2.39 -0.02 1.77 16 27 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 29 H 0.08 2.86 8.12 -2.39 -0.02 2.84 16 30 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.08 2.80 8.14 -2.38 -0.02 2.78 16 32 H 0.41 15.66 7.80 -92.71 -0.72 14.94 16 33 H 0.20 1.95 8.06 -2.91 -0.02 1.93 16 34 H 0.20 0.07 8.06 -2.91 -0.02 0.04 16 35 H 0.19 1.51 8.06 -2.91 -0.02 1.49 16 Total: -1.00 -77.85 310.24 1.86 -75.99 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 0.40 Total: 13.80 kcal Atomic # 6 Polarization: 19.74 SS G_CDS: 5.39 Total: 25.13 kcal Atomic # 7 Polarization: -128.40 SS G_CDS: -6.59 Total: -135.00 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: -0.06 Total: -25.29 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.70 Total: -3.35 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -77.85 1.86 -75.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038843328.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.898 kcal (2) G-P(sol) polarization free energy of solvation -77.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds