Wall clock time and date at job start Wed Apr 15 2020 11:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86799 * 120.00231 * 2 1 4 4 H 1.48500 * 109.47075 * 269.99804 * 3 2 1 5 5 H 1.48494 * 109.47352 * 30.00160 * 3 2 1 6 6 H 1.48502 * 109.47061 * 149.99823 * 3 2 1 7 7 C 1.38954 * 119.99652 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99841 * 359.97438 * 7 2 1 9 9 N 1.37091 * 119.99784 * 180.02562 * 7 2 1 10 10 C 1.34785 * 119.99967 * 179.97438 * 9 7 2 11 11 O 1.21286 * 119.99714 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00017 * 179.97438 * 10 9 7 13 13 C 1.52996 * 109.47057 * 179.97438 * 12 10 9 14 14 H 1.09001 * 109.46993 * 54.99904 * 13 12 10 15 15 C 1.53008 * 109.47409 * 295.00409 * 13 12 10 16 16 C 1.52996 * 109.46896 * 179.97438 * 15 13 12 17 17 C 1.53002 * 109.47217 * 60.00199 * 16 15 13 18 18 C 1.52997 * 109.46978 * 299.99394 * 17 16 15 19 19 H 1.09001 * 109.46922 * 300.00374 * 18 17 16 20 20 C 1.52997 * 109.47232 * 180.02562 * 18 17 16 21 21 F 1.39905 * 109.47157 * 59.99991 * 20 18 17 22 22 F 1.39900 * 109.47010 * 300.00382 * 20 18 17 23 23 F 1.39897 * 109.47422 * 180.02562 * 20 18 17 24 24 C 1.52996 * 109.47165 * 60.00120 * 18 17 16 25 25 H 0.97000 * 119.99737 * 0.02562 * 1 2 3 26 26 H 0.96998 * 120.00626 * 359.97438 * 9 7 2 27 27 H 1.09004 * 109.47075 * 60.00519 * 12 10 9 28 28 H 1.08997 * 109.47516 * 300.00302 * 12 10 9 29 29 H 1.09000 * 109.47188 * 59.99867 * 15 13 12 30 30 H 1.09001 * 109.46630 * 299.99716 * 15 13 12 31 31 H 1.09001 * 109.47364 * 299.99408 * 16 15 13 32 32 H 1.09004 * 109.46785 * 179.97438 * 16 15 13 33 33 H 1.09002 * 109.46838 * 180.02562 * 17 16 15 34 34 H 1.08998 * 109.47387 * 60.00083 * 17 16 15 35 35 H 1.09001 * 109.46997 * 59.99740 * 24 18 17 36 36 H 1.08996 * 109.47452 * 180.02562 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4458 2.6526 0.7000 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2034 -0.0005 8 1 1.4688 -2.1386 -0.0005 9 7 3.3797 -1.2034 0.0000 10 6 4.0536 -2.3707 0.0000 11 8 3.4471 -3.4211 0.0000 12 6 5.5606 -2.3708 0.0000 13 6 6.0705 -3.8133 0.0006 14 1 5.6358 -4.3527 -0.8409 15 6 5.6657 -4.4968 1.3083 16 6 6.1751 -5.9395 1.3085 17 6 7.6999 -5.9420 1.1826 18 6 8.1047 -5.2585 -0.1250 19 1 7.6697 -5.7977 -0.9665 20 6 9.6295 -5.2615 -0.2512 21 9 10.0948 -6.5809 -0.2511 22 9 10.1882 -4.5700 0.8289 23 9 9.9997 -4.6361 -1.4466 24 6 7.5953 -3.8159 -0.1254 25 1 -0.4850 0.8401 -0.0004 26 1 3.8648 -0.3635 0.0004 27 1 5.9240 -1.8570 0.8901 28 1 5.9240 -1.8569 -0.8899 29 1 4.5793 -4.4955 1.3978 30 1 6.1003 -3.9575 2.1499 31 1 5.7401 -6.4786 0.4670 32 1 5.8870 -6.4263 2.2403 33 1 8.0628 -6.9698 1.1824 34 1 8.1349 -5.4030 2.0242 35 1 8.0303 -3.2768 0.7163 36 1 7.8833 -3.3291 -1.0571 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001442987556.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:53 Heat of formation + Delta-G solvation = -223.235095 kcal Electronic energy + Delta-G solvation = -22353.007284 eV Core-core repulsion = 18420.707429 eV Total energy + Delta-G solvation = -3932.299855 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.24539 -47.73122 -47.70318 -39.36380 -37.79407 -34.12252 -32.68640 -31.72061 -31.43074 -27.50650 -25.74477 -24.43207 -22.24773 -21.49644 -20.00331 -19.31296 -18.39891 -18.37470 -18.29170 -17.33538 -15.86968 -15.27227 -15.03505 -14.82214 -14.59959 -14.41984 -14.15536 -14.01883 -13.88456 -13.85125 -13.72204 -13.47583 -13.12406 -12.77470 -12.42574 -12.18201 -11.99774 -11.68160 -11.55314 -11.33779 -11.17975 -10.90570 -10.60687 -10.38432 -10.29435 -10.06264 -9.98576 -9.54730 -8.46277 -8.18818 -6.33118 -3.84362 2.62946 3.01752 3.05963 3.14271 3.63895 3.73521 3.84566 3.90646 4.08790 4.52428 4.59220 4.70807 4.92045 5.08085 5.16961 5.24021 5.31647 5.37448 5.37882 5.46423 5.76653 5.78790 5.85130 5.90963 5.92532 5.97915 6.22432 6.27339 6.32743 6.64001 6.79717 7.55480 8.13676 8.57447 8.93189 9.41508 9.81579 10.80016 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.034097 B = 0.003757 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.995849 B = 7450.638500 C = 7932.110818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.042 3.958 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.307 4.307 8 H 0.119 0.881 9 N -0.590 5.590 10 C 0.450 3.550 11 O -0.575 6.575 12 C -0.132 4.132 13 C -0.060 4.060 14 H 0.081 0.919 15 C -0.124 4.124 16 C -0.112 4.112 17 C -0.117 4.117 18 C -0.129 4.129 19 H 0.114 0.886 20 C 0.452 3.548 21 F -0.187 7.187 22 F -0.184 7.184 23 F -0.185 7.185 24 C -0.116 4.116 25 H 0.273 0.727 26 H 0.371 0.629 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.314 -7.605 0.954 20.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.161 4.161 3 Si 0.705 3.295 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.435 4.435 8 H 0.137 0.863 9 N -0.229 5.229 10 C 0.237 3.763 11 O -0.459 6.459 12 C -0.172 4.172 13 C -0.079 4.079 14 H 0.100 0.900 15 C -0.161 4.161 16 C -0.149 4.149 17 C -0.155 4.155 18 C -0.148 4.148 19 H 0.132 0.868 20 C 0.398 3.602 21 F -0.168 7.168 22 F -0.165 7.165 23 F -0.167 7.167 24 C -0.153 4.153 25 H 0.084 0.916 26 H 0.204 0.796 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.115 0.885 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 18.727 -8.181 0.953 20.458 hybrid contribution 0.931 1.493 -0.087 1.762 sum 19.657 -6.687 0.866 20.782 Atomic orbital electron populations 1.69623 1.05670 1.27517 1.49318 1.25050 0.95489 0.98009 0.97601 0.86678 0.79809 0.84044 0.78920 1.19612 1.20180 1.19457 1.19449 0.79405 0.96592 1.48092 0.86289 1.42282 1.07540 1.06371 1.66662 1.19821 0.88565 0.84344 0.83585 1.90510 1.69932 1.30856 1.54573 1.21592 0.94984 0.97716 1.02922 1.20739 0.91779 0.95450 0.99884 0.90021 1.21780 1.04043 0.94078 0.96209 1.21468 0.92914 0.98220 1.02337 1.21643 0.98503 1.00410 0.94946 1.22513 0.87158 1.01764 1.03411 0.86782 1.20782 0.92905 0.73140 0.73397 1.93163 1.90870 1.36581 1.96225 1.93159 1.87729 1.79736 1.55901 1.93172 1.93337 1.82774 1.47388 1.21727 0.97585 0.92671 1.03334 0.91612 0.79642 0.90314 0.90288 0.88494 0.92713 0.91524 0.91451 0.91094 0.90786 0.90667 0.90730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.54 13.96 55.50 0.77 -24.77 16 2 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 3 Si 0.88 19.20 27.74 -169.99 -4.71 14.48 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 6 H -0.27 -5.36 6.52 56.52 0.37 -4.99 16 7 C -0.31 -8.54 10.16 -14.93 -0.15 -8.69 16 8 H 0.12 3.78 7.39 -52.49 -0.39 3.39 16 9 N -0.59 -13.74 5.09 -10.96 -0.06 -13.80 16 10 C 0.45 9.68 7.50 -10.98 -0.08 9.60 16 11 O -0.57 -14.35 13.54 5.55 0.08 -14.27 16 12 C -0.13 -2.00 5.18 -27.89 -0.14 -2.15 16 13 C -0.06 -0.81 1.84 -90.62 -0.17 -0.97 16 14 H 0.08 1.22 7.95 -51.93 -0.41 0.81 16 15 C -0.12 -1.71 4.94 -26.73 -0.13 -1.84 16 16 C -0.11 -1.25 5.92 -26.73 -0.16 -1.40 16 17 C -0.12 -1.12 4.96 -26.73 -0.13 -1.26 16 18 C -0.13 -1.27 2.16 -90.62 -0.20 -1.46 16 19 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 20 C 0.45 4.70 2.69 37.16 0.10 4.80 16 21 F -0.19 -2.01 16.80 2.25 0.04 -1.97 16 22 F -0.18 -2.03 16.28 2.25 0.04 -1.99 16 23 F -0.19 -2.06 16.80 2.25 0.04 -2.02 16 24 C -0.12 -1.23 4.24 -26.73 -0.11 -1.35 16 25 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 26 H 0.37 7.63 5.76 -40.82 -0.24 7.39 16 27 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.10 1.71 5.95 -51.93 -0.31 1.40 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.61 7.80 -51.93 -0.41 0.21 16 34 H 0.07 0.70 7.80 -51.93 -0.41 0.30 16 35 H 0.07 0.77 7.80 -51.93 -0.41 0.37 16 36 H 0.07 0.75 7.80 -51.93 -0.41 0.35 16 LS Contribution 301.45 15.07 4.54 4.54 Total: -1.00 -30.37 301.45 -5.21 -35.58 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -4.67 Total: 7.91 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -1.27 Total: -3.69 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.72 Total: -38.57 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: 0.08 Total: -14.27 kcal Atomic # 9 Polarization: -6.09 SS G_CDS: 0.11 Total: -5.98 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.71 Total: 14.48 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.37 -5.21 -35.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001442987556.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -187.659 kcal (2) G-P(sol) polarization free energy of solvation -30.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds