Wall clock time and date at job start Wed Apr 15 2020 11:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86799 * 120.00231 * 2 1 4 4 H 1.48500 * 109.47075 * 269.99804 * 3 2 1 5 5 H 1.48494 * 109.47352 * 30.00160 * 3 2 1 6 6 H 1.48502 * 109.47061 * 149.99823 * 3 2 1 7 7 C 1.38954 * 119.99652 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99841 * 359.97438 * 7 2 1 9 9 N 1.37091 * 119.99784 * 180.02562 * 7 2 1 10 10 C 1.34785 * 119.99967 * 179.97438 * 9 7 2 11 11 O 1.21286 * 119.99714 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00017 * 179.97438 * 10 9 7 13 13 C 1.52996 * 109.47057 * 179.97438 * 12 10 9 14 14 H 1.09001 * 109.46993 * 54.99904 * 13 12 10 15 15 C 1.53008 * 109.47409 * 295.00409 * 13 12 10 16 16 C 1.52996 * 109.46896 * 179.97438 * 15 13 12 17 17 C 1.53002 * 109.47217 * 60.00199 * 16 15 13 18 18 C 1.52997 * 109.46978 * 299.99394 * 17 16 15 19 19 H 1.09001 * 109.46922 * 300.00374 * 18 17 16 20 20 C 1.52997 * 109.47232 * 180.02562 * 18 17 16 21 21 F 1.39905 * 109.47157 * 59.99991 * 20 18 17 22 22 F 1.39900 * 109.47010 * 300.00382 * 20 18 17 23 23 F 1.39897 * 109.47422 * 180.02562 * 20 18 17 24 24 C 1.52996 * 109.47165 * 60.00120 * 18 17 16 25 25 H 0.97000 * 119.99737 * 0.02562 * 1 2 3 26 26 H 0.96998 * 120.00626 * 359.97438 * 9 7 2 27 27 H 1.09004 * 109.47075 * 60.00519 * 12 10 9 28 28 H 1.08997 * 109.47516 * 300.00302 * 12 10 9 29 29 H 1.09000 * 109.47188 * 59.99867 * 15 13 12 30 30 H 1.09001 * 109.46630 * 299.99716 * 15 13 12 31 31 H 1.09001 * 109.47364 * 299.99408 * 16 15 13 32 32 H 1.09004 * 109.46785 * 179.97438 * 16 15 13 33 33 H 1.09002 * 109.46838 * 180.02562 * 17 16 15 34 34 H 1.08998 * 109.47387 * 60.00083 * 17 16 15 35 35 H 1.09001 * 109.46997 * 59.99740 * 24 18 17 36 36 H 1.08996 * 109.47452 * 180.02562 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4458 2.6526 0.7000 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2034 -0.0005 8 1 1.4688 -2.1386 -0.0005 9 7 3.3797 -1.2034 0.0000 10 6 4.0536 -2.3707 0.0000 11 8 3.4471 -3.4211 0.0000 12 6 5.5606 -2.3708 0.0000 13 6 6.0705 -3.8133 0.0006 14 1 5.6358 -4.3527 -0.8409 15 6 5.6657 -4.4968 1.3083 16 6 6.1751 -5.9395 1.3085 17 6 7.6999 -5.9420 1.1826 18 6 8.1047 -5.2585 -0.1250 19 1 7.6697 -5.7977 -0.9665 20 6 9.6295 -5.2615 -0.2512 21 9 10.0948 -6.5809 -0.2511 22 9 10.1882 -4.5700 0.8289 23 9 9.9997 -4.6361 -1.4466 24 6 7.5953 -3.8159 -0.1254 25 1 -0.4850 0.8401 -0.0004 26 1 3.8648 -0.3635 0.0004 27 1 5.9240 -1.8570 0.8901 28 1 5.9240 -1.8569 -0.8899 29 1 4.5793 -4.4955 1.3978 30 1 6.1003 -3.9575 2.1499 31 1 5.7401 -6.4786 0.4670 32 1 5.8870 -6.4263 2.2403 33 1 8.0628 -6.9698 1.1824 34 1 8.1349 -5.4030 2.0242 35 1 8.0303 -3.2768 0.7163 36 1 7.8833 -3.3291 -1.0571 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001442987556.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:52 Heat of formation + Delta-G solvation = -242.312696 kcal Electronic energy + Delta-G solvation = -22353.834551 eV Core-core repulsion = 18420.707429 eV Total energy + Delta-G solvation = -3933.127122 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -51.05624 -48.54582 -48.51680 -40.73964 -39.16489 -36.02788 -33.91662 -33.64209 -32.39312 -28.87016 -26.60917 -26.22023 -23.16004 -22.58101 -21.18269 -20.91216 -20.08404 -19.23786 -19.18581 -18.23824 -17.58887 -16.77415 -16.15156 -16.13604 -15.53796 -15.48430 -15.32448 -15.00678 -14.88626 -14.80505 -14.69425 -14.67553 -14.47615 -14.25006 -14.02290 -13.37749 -13.02688 -12.96524 -12.78012 -12.52116 -12.38662 -12.19178 -11.98431 -11.88865 -11.55655 -11.39059 -11.26541 -11.02924 -10.26665 -10.17986 -8.40242 -6.00312 1.30909 1.36043 1.44760 1.82243 2.01132 2.23784 2.79729 2.96125 3.10971 3.15074 3.17745 3.70688 3.78273 4.01609 4.09571 4.18142 4.31237 4.38894 4.42842 4.57535 4.65133 4.76022 4.77863 4.86081 5.04056 5.06519 5.17424 5.27744 5.34070 5.56032 5.57401 5.62996 5.98918 6.60604 6.90980 7.43480 8.00915 8.77574 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.034097 B = 0.003757 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.995849 B = 7450.638500 C = 7932.110818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.016 4.016 3 Si 0.963 3.037 4 H -0.258 1.258 5 H -0.276 1.276 6 H -0.231 1.231 7 C -0.328 4.328 8 H 0.056 0.944 9 N -0.596 5.596 10 C 0.450 3.550 11 O -0.616 6.616 12 C -0.123 4.123 13 C -0.057 4.057 14 H 0.062 0.938 15 C -0.124 4.124 16 C -0.108 4.108 17 C -0.111 4.111 18 C -0.127 4.127 19 H 0.121 0.879 20 C 0.457 3.543 21 F -0.189 7.189 22 F -0.186 7.186 23 F -0.189 7.189 24 C -0.107 4.107 25 H 0.278 0.722 26 H 0.389 0.611 27 H 0.108 0.892 28 H 0.110 0.890 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.945 -6.192 1.081 23.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.214 4.214 3 Si 0.783 3.217 4 H -0.182 1.182 5 H -0.202 1.202 6 H -0.155 1.155 7 C -0.457 4.457 8 H 0.074 0.926 9 N -0.237 5.237 10 C 0.239 3.761 11 O -0.501 6.501 12 C -0.163 4.163 13 C -0.076 4.076 14 H 0.080 0.920 15 C -0.162 4.162 16 C -0.145 4.145 17 C -0.148 4.148 18 C -0.146 4.146 19 H 0.139 0.861 20 C 0.403 3.597 21 F -0.170 7.170 22 F -0.167 7.167 23 F -0.170 7.170 24 C -0.144 4.144 25 H 0.088 0.912 26 H 0.224 0.776 27 H 0.126 0.874 28 H 0.128 0.872 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 22.390 -6.788 1.081 23.421 hybrid contribution -0.258 0.882 -0.122 0.927 sum 22.132 -5.906 0.959 22.926 Atomic orbital electron populations 1.69808 1.08147 1.29152 1.50632 1.26104 0.96437 1.02686 0.96215 0.85386 0.79513 0.76875 0.79898 1.18225 1.20160 1.15451 1.19032 0.81736 0.94851 1.50079 0.92607 1.42151 1.05756 1.07877 1.67909 1.21140 0.91383 0.83073 0.80536 1.90510 1.71792 1.32486 1.55313 1.21660 0.89248 0.99615 1.05732 1.20687 0.93995 0.94095 0.98823 0.91997 1.21710 1.01143 0.96273 0.97054 1.21400 0.94317 0.96346 1.02448 1.21590 0.96758 1.01405 0.95096 1.22494 0.86870 1.01430 1.03851 0.86114 1.20740 0.92845 0.72961 0.73166 1.93164 1.90901 1.36737 1.96219 1.93158 1.87811 1.79775 1.55988 1.93169 1.93386 1.82834 1.47634 1.21625 0.94738 0.93520 1.04557 0.91241 0.77572 0.87418 0.87183 0.93175 0.91497 0.92260 0.90831 0.89786 0.90108 0.89445 0.89484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.43 13.96 21.66 0.30 -56.13 16 2 C -0.02 -0.89 5.50 84.93 0.47 -0.42 16 3 Si 0.96 38.65 27.74 68.60 1.90 40.55 16 4 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 5 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 6 H -0.23 -7.79 6.52 99.48 0.65 -7.14 16 7 C -0.33 -19.03 10.16 84.04 0.85 -18.18 16 8 H 0.06 3.86 7.39 -2.91 -0.02 3.83 16 9 N -0.60 -27.60 5.09 -306.99 -1.56 -29.16 16 10 C 0.45 19.36 7.50 87.66 0.66 20.02 16 11 O -0.62 -32.20 13.54 -3.05 -0.04 -32.25 16 12 C -0.12 -3.39 5.18 29.85 0.15 -3.24 16 13 C -0.06 -1.44 1.84 -10.79 -0.02 -1.46 16 14 H 0.06 1.81 7.95 -2.39 -0.02 1.79 16 15 C -0.12 -3.35 4.94 30.60 0.15 -3.19 16 16 C -0.11 -2.27 5.92 30.59 0.18 -2.09 16 17 C -0.11 -1.83 4.96 30.59 0.15 -1.67 16 18 C -0.13 -2.12 2.16 -10.80 -0.02 -2.14 16 19 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 20 C 0.46 8.09 2.69 71.98 0.19 8.29 16 21 F -0.19 -3.54 16.80 44.97 0.76 -2.79 16 22 F -0.19 -3.48 16.28 44.97 0.73 -2.75 16 23 F -0.19 -3.63 16.80 44.97 0.76 -2.88 16 24 C -0.11 -1.91 4.24 30.59 0.13 -1.78 16 25 H 0.28 15.33 8.31 -92.71 -0.77 14.56 16 26 H 0.39 14.96 5.76 -92.71 -0.53 14.42 16 27 H 0.11 2.45 8.14 -2.38 -0.02 2.43 16 28 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.05 1.83 5.95 -2.39 -0.01 1.82 16 30 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.08 1.21 7.80 -2.39 -0.02 1.19 16 34 H 0.08 1.26 7.80 -2.39 -0.02 1.24 16 35 H 0.09 1.40 7.80 -2.39 -0.02 1.38 16 36 H 0.09 1.39 7.80 -2.39 -0.02 1.37 16 Total: -1.00 -71.46 301.45 6.25 -65.21 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: 0.51 Total: 26.06 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: 2.90 Total: -5.87 kcal Atomic # 7 Polarization: -84.03 SS G_CDS: -1.26 Total: -85.29 kcal Atomic # 8 Polarization: -32.20 SS G_CDS: -0.04 Total: -32.25 kcal Atomic # 9 Polarization: -10.65 SS G_CDS: 2.24 Total: -8.41 kcal Atomic # 14 Polarization: 38.65 SS G_CDS: 1.90 Total: 40.55 kcal Total: -71.46 6.25 -65.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001442987556.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.106 kcal (2) G-P(sol) polarization free energy of solvation -71.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -248.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -242.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds