Wall clock time and date at job start Wed Apr 15 2020 11:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99196 * 2 1 4 4 H 1.48497 * 109.47597 * 275.39064 * 3 2 1 5 5 H 1.48499 * 109.47349 * 35.39281 * 3 2 1 6 6 H 1.48510 * 109.46945 * 155.39241 * 3 2 1 7 7 C 1.37867 * 120.00636 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99956 * 347.93681 * 7 2 1 9 9 C 1.50704 * 120.00210 * 167.93730 * 7 2 1 10 10 C 1.52999 * 115.54769 * 324.43675 * 9 7 2 11 11 O 1.42904 * 109.47003 * 186.28547 * 10 9 7 12 12 N 1.41595 * 113.99689 * 175.37186 * 11 10 9 13 13 C 1.30033 * 119.99663 * 184.84657 * 12 11 10 14 14 N 1.38494 * 119.99978 * 353.73435 * 13 12 11 15 15 C 1.48097 * 119.99658 * 173.74185 * 13 12 11 16 16 C 1.39399 * 119.70694 * 359.97438 * 15 13 12 17 17 C 1.38382 * 119.09655 * 180.02562 * 16 15 13 18 18 C 1.38960 * 118.48666 * 359.97438 * 17 16 15 19 19 F 1.35100 * 120.34553 * 180.02562 * 18 17 16 20 20 C 1.38643 * 119.31602 * 0.02562 * 18 17 16 21 21 N 1.31628 * 120.86237 * 359.97438 * 20 18 17 22 22 C 1.52998 * 117.50058 * 110.10698 * 9 7 2 23 23 C 1.53002 * 117.49943 * 178.76519 * 9 7 2 24 24 H 0.96998 * 120.01040 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.47160 * 66.28958 * 10 9 7 26 26 H 1.08999 * 109.47337 * 306.29002 * 10 9 7 27 27 H 0.97006 * 120.00141 * 186.09226 * 14 13 12 28 28 H 0.97003 * 120.00175 * 6.10170 * 14 13 12 29 29 H 1.08001 * 120.45010 * 0.02562 * 16 15 13 30 30 H 1.07993 * 120.75588 * 179.97438 * 17 16 15 31 31 H 1.08006 * 119.56693 * 179.97438 * 20 18 17 32 32 H 1.08996 * 117.50323 * 215.00782 * 22 9 7 33 33 H 1.09005 * 117.49558 * 0.02562 * 22 9 7 34 34 H 1.08993 * 117.49580 * 359.97438 * 23 9 7 35 35 H 1.08997 * 117.49257 * 144.97285 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2489 1.6179 0.0000 4 1 2.3825 2.1124 -1.3938 5 1 1.5079 2.6172 0.8109 6 1 3.5989 1.4102 0.5830 7 6 2.0046 -1.1939 0.0005 8 1 1.4826 -2.1189 0.1964 9 6 3.4867 -1.2083 -0.2722 10 6 3.9795 -0.1822 -1.2945 11 8 5.3656 -0.4042 -1.5620 12 7 5.8971 0.4292 -2.5758 13 6 7.1220 0.2620 -2.9791 14 7 7.9473 -0.6414 -2.3305 15 6 7.6344 1.0379 -4.1318 16 6 6.7982 1.9453 -4.7803 17 6 7.2899 2.6632 -5.8563 18 6 8.6055 2.4502 -6.2496 19 9 9.1242 3.1310 -7.2949 20 6 9.3804 1.5316 -5.5583 21 7 8.8857 0.8629 -4.5381 22 6 4.4166 -1.5453 0.8951 23 6 4.1998 -2.5613 -0.2291 24 1 -0.4851 0.8399 -0.0004 25 1 3.8429 0.8229 -0.8953 26 1 3.4099 -0.2869 -2.2179 27 1 8.8846 -0.7028 -2.5730 28 1 7.5881 -1.2129 -1.6339 29 1 5.7804 2.0861 -4.4475 30 1 6.6654 3.3728 -6.3785 31 1 10.4034 1.3625 -5.8608 32 1 5.3794 -1.0359 0.9348 33 1 3.9563 -1.7569 1.8603 34 1 3.5971 -3.4408 -0.0030 35 1 5.0198 -2.7204 -0.9293 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883050044.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:01 Heat of formation + Delta-G solvation = 50.312677 kcal Electronic energy + Delta-G solvation = -20775.120422 eV Core-core repulsion = 17305.371675 eV Total energy + Delta-G solvation = -3469.748747 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.40620 -40.54146 -37.85577 -36.71788 -34.55719 -33.03804 -32.23927 -31.32828 -29.96981 -27.19318 -25.05700 -24.19828 -24.00270 -21.33749 -20.66897 -19.06937 -18.16051 -17.96970 -17.49237 -16.87156 -16.35783 -16.23637 -15.87359 -15.27679 -14.67530 -14.41893 -14.26495 -14.21963 -13.99114 -13.51785 -13.26133 -12.90582 -12.69831 -12.40870 -11.86651 -11.11843 -10.83971 -10.42689 -10.39604 -10.38911 -10.23226 -9.86234 -9.69322 -9.42328 -9.34893 -9.20718 -8.64752 -8.32482 -7.85593 -6.22069 -4.15889 0.18926 0.66662 2.37831 2.80333 3.24796 3.36004 3.39881 3.45357 3.57128 3.60284 4.07771 4.30571 4.32340 4.44380 4.65791 4.78689 5.06169 5.29355 5.41106 5.49664 5.56224 5.89419 6.01262 6.11491 6.17242 6.28070 6.53203 6.63724 6.68159 6.84751 7.04554 7.10444 7.25967 7.29765 7.67185 7.77213 8.21127 8.44506 8.82871 9.41267 10.89963 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.025045 B = 0.004065 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.718406 B = 6887.004411 C = 7712.631765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.077 3.923 3 Si 0.883 3.117 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.258 1.258 7 C -0.482 4.482 8 H 0.084 0.916 9 C 0.012 3.988 10 C 0.096 3.904 11 O -0.225 6.225 12 N -0.408 5.408 13 C 0.405 3.595 14 N -0.862 5.862 15 C 0.165 3.835 16 C -0.092 4.092 17 C -0.109 4.109 18 C 0.056 3.944 19 F -0.127 7.127 20 C 0.080 3.920 21 N -0.442 5.442 22 C -0.201 4.201 23 C -0.181 4.181 24 H 0.267 0.733 25 H 0.049 0.951 26 H 0.060 0.940 27 H 0.402 0.598 28 H 0.410 0.590 29 H 0.163 0.837 30 H 0.156 0.844 31 H 0.174 0.826 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.736 4.820 -11.690 22.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.127 4.127 3 Si 0.714 3.286 4 H -0.205 1.205 5 H -0.223 1.223 6 H -0.184 1.184 7 C -0.519 4.519 8 H 0.102 0.898 9 C 0.009 3.991 10 C 0.020 3.980 11 O -0.239 6.239 12 N -0.174 5.174 13 C 0.126 3.874 14 N -0.416 5.416 15 C 0.028 3.972 16 C -0.114 4.114 17 C -0.135 4.135 18 C 0.034 3.966 19 F -0.106 7.106 20 C -0.081 4.081 21 N -0.152 5.152 22 C -0.239 4.239 23 C -0.218 4.218 24 H 0.077 0.923 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.230 0.770 28 H 0.240 0.760 29 H 0.181 0.819 30 H 0.173 0.827 31 H 0.191 0.809 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 18.302 4.766 -11.308 22.035 hybrid contribution 0.615 0.988 -0.241 1.189 sum 18.917 5.755 -11.549 22.899 Atomic orbital electron populations 1.69910 1.06331 1.27418 1.48583 1.24999 0.94656 0.99102 0.93913 0.87007 0.79770 0.83479 0.78332 1.20512 1.22293 1.18368 1.20315 0.87820 0.95333 1.48401 0.89841 1.19388 0.93770 0.92326 0.93590 1.22712 0.78079 0.98753 0.98445 1.89663 1.27701 1.55372 1.51125 1.76967 1.10662 1.18515 1.11248 1.20321 0.87757 0.88979 0.90364 1.42768 1.12455 1.43352 1.43065 1.18867 0.89675 0.94985 0.93692 1.22179 1.02374 0.93323 0.93511 1.21714 0.94061 1.00398 0.97323 1.18958 0.93687 0.95651 0.88308 1.91542 1.86728 1.77854 1.54458 1.22804 1.00770 0.92700 0.91777 1.67417 1.12694 1.22647 1.12473 1.23089 1.00930 1.05184 0.94713 1.22706 1.02872 0.93987 1.02226 0.92256 0.93325 0.92150 0.76958 0.75967 0.81940 0.82680 0.80874 0.91180 0.89885 0.90155 0.90595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.59 13.96 55.43 0.77 -25.82 16 2 C 0.08 2.20 5.42 -17.82 -0.10 2.11 16 3 Si 0.88 22.10 24.21 -169.99 -4.12 17.98 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.26 -6.37 6.36 56.52 0.36 -6.01 16 7 C -0.48 -13.60 9.58 -34.44 -0.33 -13.93 16 8 H 0.08 2.52 8.06 -52.49 -0.42 2.10 16 9 C 0.01 0.29 1.85 -155.66 -0.29 0.00 16 10 C 0.10 2.24 5.02 37.16 0.19 2.43 16 11 O -0.23 -4.70 8.65 -11.47 -0.10 -4.80 16 12 N -0.41 -7.51 10.48 32.64 0.34 -7.17 16 13 C 0.40 6.07 7.97 -153.78 -1.23 4.85 16 14 N -0.86 -11.02 8.99 32.58 0.29 -10.73 16 15 C 0.17 2.06 6.75 -83.00 -0.56 1.50 16 16 C -0.09 -1.01 9.61 -39.10 -0.38 -1.38 16 17 C -0.11 -0.93 10.15 -39.26 -0.40 -1.33 16 18 C 0.06 0.48 7.35 -39.16 -0.29 0.19 16 19 F -0.13 -1.08 17.28 2.25 0.04 -1.04 16 20 C 0.08 0.68 11.17 -17.49 -0.20 0.48 16 21 N -0.44 -4.75 9.61 -9.75 -0.09 -4.85 16 22 C -0.20 -4.44 9.67 -26.70 -0.26 -4.69 16 23 C -0.18 -3.87 9.63 -26.69 -0.26 -4.13 16 24 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.05 1.20 2.65 -51.92 -0.14 1.06 16 26 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 27 H 0.40 4.18 8.26 -40.82 -0.34 3.84 16 28 H 0.41 5.47 7.96 -40.82 -0.32 5.14 16 29 H 0.16 1.84 7.54 -52.49 -0.40 1.44 16 30 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 31 H 0.17 0.93 8.06 -52.48 -0.42 0.51 16 32 H 0.07 1.46 7.86 -51.93 -0.41 1.06 16 33 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 34 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 35 H 0.08 1.51 7.47 -51.93 -0.39 1.12 16 LS Contribution 306.58 15.07 4.62 4.62 Total: -1.00 -31.37 306.58 -6.03 -37.41 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -3.71 Total: 8.32 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: -4.09 Total: -13.91 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: 1.31 Total: -48.56 kcal Atomic # 8 Polarization: -4.70 SS G_CDS: -0.10 Total: -4.80 kcal Atomic # 9 Polarization: -1.08 SS G_CDS: 0.04 Total: -1.04 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.12 Total: 17.98 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.37 -6.03 -37.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883050044.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.718 kcal (2) G-P(sol) polarization free energy of solvation -31.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds