Wall clock time and date at job start Wed Apr 15 2020 11:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99196 * 2 1 4 4 H 1.48497 * 109.47597 * 275.39064 * 3 2 1 5 5 H 1.48499 * 109.47349 * 35.39281 * 3 2 1 6 6 H 1.48510 * 109.46945 * 155.39241 * 3 2 1 7 7 C 1.37867 * 120.00636 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99956 * 347.93681 * 7 2 1 9 9 C 1.50704 * 120.00210 * 167.93730 * 7 2 1 10 10 C 1.52999 * 115.54769 * 324.43675 * 9 7 2 11 11 O 1.42904 * 109.47003 * 186.28547 * 10 9 7 12 12 N 1.41595 * 113.99689 * 175.37186 * 11 10 9 13 13 C 1.30033 * 119.99663 * 184.84657 * 12 11 10 14 14 N 1.38494 * 119.99978 * 353.73435 * 13 12 11 15 15 C 1.48097 * 119.99658 * 173.74185 * 13 12 11 16 16 C 1.39399 * 119.70694 * 359.97438 * 15 13 12 17 17 C 1.38382 * 119.09655 * 180.02562 * 16 15 13 18 18 C 1.38960 * 118.48666 * 359.97438 * 17 16 15 19 19 F 1.35100 * 120.34553 * 180.02562 * 18 17 16 20 20 C 1.38643 * 119.31602 * 0.02562 * 18 17 16 21 21 N 1.31628 * 120.86237 * 359.97438 * 20 18 17 22 22 C 1.52998 * 117.50058 * 110.10698 * 9 7 2 23 23 C 1.53002 * 117.49943 * 178.76519 * 9 7 2 24 24 H 0.96998 * 120.01040 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.47160 * 66.28958 * 10 9 7 26 26 H 1.08999 * 109.47337 * 306.29002 * 10 9 7 27 27 H 0.97006 * 120.00141 * 186.09226 * 14 13 12 28 28 H 0.97003 * 120.00175 * 6.10170 * 14 13 12 29 29 H 1.08001 * 120.45010 * 0.02562 * 16 15 13 30 30 H 1.07993 * 120.75588 * 179.97438 * 17 16 15 31 31 H 1.08006 * 119.56693 * 179.97438 * 20 18 17 32 32 H 1.08996 * 117.50323 * 215.00782 * 22 9 7 33 33 H 1.09005 * 117.49558 * 0.02562 * 22 9 7 34 34 H 1.08993 * 117.49580 * 359.97438 * 23 9 7 35 35 H 1.08997 * 117.49257 * 144.97285 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2489 1.6179 0.0000 4 1 2.3825 2.1124 -1.3938 5 1 1.5079 2.6172 0.8109 6 1 3.5989 1.4102 0.5830 7 6 2.0046 -1.1939 0.0005 8 1 1.4826 -2.1189 0.1964 9 6 3.4867 -1.2083 -0.2722 10 6 3.9795 -0.1822 -1.2945 11 8 5.3656 -0.4042 -1.5620 12 7 5.8971 0.4292 -2.5758 13 6 7.1220 0.2620 -2.9791 14 7 7.9473 -0.6414 -2.3305 15 6 7.6344 1.0379 -4.1318 16 6 6.7982 1.9453 -4.7803 17 6 7.2899 2.6632 -5.8563 18 6 8.6055 2.4502 -6.2496 19 9 9.1242 3.1310 -7.2949 20 6 9.3804 1.5316 -5.5583 21 7 8.8857 0.8629 -4.5381 22 6 4.4166 -1.5453 0.8951 23 6 4.1998 -2.5613 -0.2291 24 1 -0.4851 0.8399 -0.0004 25 1 3.8429 0.8229 -0.8953 26 1 3.4099 -0.2869 -2.2179 27 1 8.8846 -0.7028 -2.5730 28 1 7.5881 -1.2129 -1.6339 29 1 5.7804 2.0861 -4.4475 30 1 6.6654 3.3728 -6.3785 31 1 10.4034 1.3625 -5.8608 32 1 5.3794 -1.0359 0.9348 33 1 3.9563 -1.7569 1.8603 34 1 3.5971 -3.4408 -0.0030 35 1 5.0198 -2.7204 -0.9293 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883050044.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:01 Heat of formation + Delta-G solvation = 29.339339 kcal Electronic energy + Delta-G solvation = -20776.029895 eV Core-core repulsion = 17305.371675 eV Total energy + Delta-G solvation = -3470.658219 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.09333 -41.34045 -39.47037 -38.09126 -36.01534 -34.38924 -33.80578 -32.22364 -31.15120 -29.04412 -26.75391 -25.19385 -24.90344 -23.10010 -21.71415 -21.03556 -19.10710 -19.00272 -18.57721 -18.19660 -17.88081 -17.13144 -16.93591 -16.67898 -16.17519 -16.00486 -15.23885 -15.18873 -15.09027 -14.90717 -14.80391 -14.28085 -13.83554 -13.64828 -13.45471 -12.96490 -12.68856 -12.27413 -12.11379 -11.64512 -11.48789 -11.24762 -11.12015 -11.10399 -10.87673 -10.55384 -10.21865 -10.14280 -9.19314 -8.41344 -6.38465 -0.64189 -0.04032 1.26378 1.31222 1.32899 1.42280 1.60249 2.24584 2.51461 2.57889 2.78031 2.86418 3.22346 3.43147 3.66057 3.71082 3.81854 4.09251 4.16708 4.20675 4.33174 4.51411 4.62200 4.74876 4.80670 4.82216 4.90978 4.99914 5.19156 5.31890 5.40548 5.52297 5.64855 5.85603 6.23686 6.44307 6.61333 6.68793 7.03104 7.21416 8.74976 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.025045 B = 0.004065 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.718406 B = 6887.004411 C = 7712.631765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.029 3.971 3 Si 0.943 3.057 4 H -0.270 1.270 5 H -0.292 1.292 6 H -0.252 1.252 7 C -0.490 4.490 8 H 0.047 0.953 9 C -0.023 4.023 10 C 0.112 3.888 11 O -0.236 6.236 12 N -0.447 5.447 13 C 0.420 3.580 14 N -0.849 5.849 15 C 0.138 3.862 16 C -0.097 4.097 17 C -0.101 4.101 18 C 0.067 3.933 19 F -0.123 7.123 20 C 0.086 3.914 21 N -0.447 5.447 22 C -0.185 4.185 23 C -0.160 4.160 24 H 0.271 0.729 25 H 0.038 0.962 26 H 0.043 0.957 27 H 0.414 0.586 28 H 0.409 0.591 29 H 0.154 0.846 30 H 0.181 0.819 31 H 0.208 0.792 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.012 5.889 -13.091 26.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.170 4.170 3 Si 0.772 3.228 4 H -0.197 1.197 5 H -0.219 1.219 6 H -0.177 1.177 7 C -0.528 4.528 8 H 0.065 0.935 9 C -0.025 4.025 10 C 0.036 3.964 11 O -0.246 6.246 12 N -0.218 5.218 13 C 0.141 3.859 14 N -0.403 5.403 15 C 0.002 3.998 16 C -0.119 4.119 17 C -0.127 4.127 18 C 0.044 3.956 19 F -0.101 7.101 20 C -0.075 4.075 21 N -0.157 5.157 22 C -0.222 4.222 23 C -0.197 4.197 24 H 0.081 0.919 25 H 0.055 0.945 26 H 0.062 0.938 27 H 0.246 0.754 28 H 0.239 0.761 29 H 0.171 0.829 30 H 0.198 0.802 31 H 0.224 0.776 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 21.623 5.795 -12.693 25.734 hybrid contribution -0.185 0.606 0.017 0.633 sum 21.438 6.401 -12.675 25.714 Atomic orbital electron populations 1.70018 1.07908 1.28483 1.50599 1.25700 0.95259 1.02362 0.93701 0.86031 0.78617 0.79430 0.78736 1.19654 1.21925 1.17708 1.20465 0.90154 0.94037 1.48116 0.93515 1.19295 0.92118 0.95169 0.95929 1.22198 0.79663 0.97415 0.97129 1.89541 1.25788 1.56575 1.52701 1.77083 1.12582 1.19813 1.12289 1.20819 0.87007 0.88127 0.89928 1.42803 1.12994 1.42257 1.42205 1.18730 0.90885 0.96278 0.93919 1.22149 1.01973 0.93571 0.94235 1.21937 0.94464 0.99996 0.96348 1.19009 0.93550 0.95097 0.87914 1.91566 1.86632 1.77695 1.54229 1.23340 1.01987 0.91639 0.90569 1.67402 1.11850 1.23172 1.13300 1.23038 1.00565 1.04631 0.93999 1.22725 1.02405 0.92660 1.01925 0.91940 0.94473 0.93846 0.75435 0.76088 0.82851 0.80209 0.77587 0.89479 0.90098 0.90190 0.88574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.73 13.96 21.44 0.30 -57.43 16 2 C 0.03 1.72 5.42 84.65 0.46 2.18 16 3 Si 0.94 46.41 24.21 68.60 1.66 48.07 16 4 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 5 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 6 H -0.25 -12.02 6.36 99.48 0.63 -11.39 16 7 C -0.49 -28.55 9.58 25.60 0.25 -28.31 16 8 H 0.05 2.97 8.06 -2.91 -0.02 2.94 16 9 C -0.02 -1.12 1.85 -52.93 -0.10 -1.22 16 10 C 0.11 5.25 5.02 71.98 0.36 5.61 16 11 O -0.24 -9.63 8.65 -38.77 -0.34 -9.96 16 12 N -0.45 -16.10 10.48 -50.65 -0.53 -16.64 16 13 C 0.42 12.01 7.97 136.33 1.09 13.10 16 14 N -0.85 -20.03 8.99 -50.83 -0.46 -20.49 16 15 C 0.14 3.18 6.75 41.91 0.28 3.46 16 16 C -0.10 -1.96 9.61 22.58 0.22 -1.75 16 17 C -0.10 -1.45 10.15 22.48 0.23 -1.22 16 18 C 0.07 0.90 7.35 22.54 0.17 1.07 16 19 F -0.12 -1.64 17.28 44.97 0.78 -0.86 16 20 C 0.09 1.14 11.17 84.82 0.95 2.08 16 21 N -0.45 -8.36 9.61 -184.77 -1.78 -10.14 16 22 C -0.18 -7.89 9.67 30.62 0.30 -7.60 16 23 C -0.16 -6.69 9.63 30.62 0.29 -6.39 16 24 H 0.27 15.63 8.31 -92.71 -0.77 14.85 16 25 H 0.04 1.82 2.65 -2.38 -0.01 1.81 16 26 H 0.04 2.11 8.14 -2.39 -0.02 2.10 16 27 H 0.41 7.62 8.26 -92.70 -0.77 6.86 16 28 H 0.41 10.10 7.96 -92.71 -0.74 9.36 16 29 H 0.15 3.38 7.54 -2.91 -0.02 3.36 16 30 H 0.18 1.61 8.06 -2.91 -0.02 1.59 16 31 H 0.21 1.27 8.06 -2.91 -0.02 1.24 16 32 H 0.09 3.44 7.86 -2.39 -0.02 3.42 16 33 H 0.08 3.47 8.14 -2.38 -0.02 3.45 16 34 H 0.08 3.32 8.14 -2.39 -0.02 3.31 16 35 H 0.10 3.62 7.47 -2.39 -0.02 3.61 16 Total: -1.00 -69.01 306.58 3.70 -65.31 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: -0.42 Total: 21.12 kcal Atomic # 6 Polarization: -23.46 SS G_CDS: 4.49 Total: -18.98 kcal Atomic # 7 Polarization: -102.23 SS G_CDS: -2.46 Total: -104.69 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: -0.34 Total: -9.96 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.78 Total: -0.86 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 1.66 Total: 48.07 kcal Total: -69.01 3.70 -65.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883050044.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.646 kcal (2) G-P(sol) polarization free energy of solvation -69.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds