Wall clock time and date at job start Wed Apr 15 2020 11:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86794 * 119.99823 * 2 1 4 4 H 1.48505 * 109.46886 * 269.99877 * 3 2 1 5 5 H 1.48497 * 109.47251 * 29.99995 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00169 * 3 2 1 7 7 C 1.38814 * 120.00068 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00274 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99655 * 0.02562 * 7 2 1 10 10 C 1.47015 * 125.65004 * 359.97135 * 9 7 2 11 11 C 1.54325 * 107.27065 * 178.98904 * 10 9 7 12 12 C 1.55157 * 102.94374 * 337.80787 * 11 10 9 13 13 H 1.09001 * 111.00846 * 153.57645 * 12 11 10 14 14 N 1.46502 * 111.00342 * 277.43173 * 12 11 10 15 15 C 1.34778 * 119.99933 * 204.99872 * 14 12 11 16 16 O 1.21556 * 120.00092 * 359.97438 * 15 14 12 17 17 C 1.47844 * 120.00140 * 179.97438 * 15 14 12 18 18 C 1.39555 * 120.54880 * 359.71941 * 17 15 14 19 19 N 1.31651 * 120.62469 * 179.72990 * 18 17 15 20 20 C 1.31945 * 121.90606 * 0.58338 * 19 18 17 21 21 C 1.38532 * 121.04729 * 359.68112 * 20 19 18 22 22 F 1.35098 * 120.37540 * 179.97438 * 21 20 19 23 23 C 1.38620 * 119.24816 * 0.02562 * 21 20 19 24 24 C 1.47425 * 125.64112 * 180.02562 * 9 7 2 25 25 H 0.97001 * 120.00422 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.88350 * 59.57113 * 10 9 7 27 27 H 1.08998 * 109.88602 * 298.40779 * 10 9 7 28 28 H 1.08996 * 110.72124 * 219.44887 * 11 10 9 29 29 H 1.08993 * 110.72326 * 96.17079 * 11 10 9 30 30 H 0.96994 * 120.00503 * 24.99476 * 14 12 11 31 31 H 1.08001 * 119.68462 * 0.02562 * 18 17 15 32 32 H 1.07998 * 119.47825 * 179.70229 * 20 19 18 33 33 H 1.07999 * 120.86472 * 180.02562 * 23 21 20 34 34 H 1.08999 * 110.36633 * 85.25018 * 24 9 7 35 35 H 1.08996 * 110.37033 * 322.91399 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1375 -2.5328 0.0006 11 6 -0.4485 -4.0441 -0.0254 12 6 0.8519 -4.6565 -0.6098 13 1 0.9837 -5.6856 -0.2755 14 7 0.8586 -4.5767 -2.0726 15 6 1.5905 -5.4506 -2.7917 16 8 2.2453 -6.3047 -2.2266 17 6 1.5969 -5.3706 -4.2680 18 6 0.8448 -4.3984 -4.9289 19 7 0.8535 -4.3224 -6.2432 20 6 1.5552 -5.1577 -6.9853 21 6 2.3240 -6.1544 -6.4069 22 9 3.0368 -7.0027 -7.1799 23 6 2.3527 -6.2722 -5.0260 24 6 1.9335 -3.7311 0.0016 25 1 -0.4851 0.8400 -0.0004 26 1 -0.5576 -2.0526 -0.8832 27 1 -0.5544 -2.0840 0.9022 28 1 -1.2984 -4.2519 -0.6754 29 1 -0.6317 -4.4176 0.9820 30 1 0.3364 -3.8951 -2.5236 31 1 0.2537 -3.6988 -4.3565 32 1 1.5301 -5.0627 -8.0608 33 1 2.9434 -7.0394 -4.5476 34 1 2.1662 -4.0414 1.0203 35 1 2.8330 -3.7409 -0.6138 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001010535128.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:40 Heat of formation + Delta-G solvation = -13.520885 kcal Electronic energy + Delta-G solvation = -21244.771338 eV Core-core repulsion = 17772.254560 eV Total energy + Delta-G solvation = -3472.516778 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.26979 -40.71357 -39.16911 -37.28233 -33.96881 -32.82601 -32.11720 -30.99150 -29.21891 -27.40962 -25.16290 -24.28370 -23.86983 -21.25086 -20.17127 -19.97053 -18.48867 -17.59450 -17.19847 -16.93033 -16.16554 -16.13106 -15.84756 -14.87089 -14.69166 -14.21721 -14.08913 -13.88407 -13.52885 -13.47872 -13.27706 -12.64009 -12.50674 -11.99652 -11.86997 -11.02250 -10.93428 -10.82029 -10.56692 -10.29401 -10.19793 -10.17593 -10.02382 -9.73208 -9.65192 -9.34065 -8.87433 -8.60184 -6.87990 -5.76876 -3.09810 0.26218 0.70157 2.72049 3.11368 3.37356 3.43335 3.44606 3.53487 3.71797 4.01689 4.40631 4.46122 4.47363 4.54986 4.85717 5.15726 5.29754 5.38708 5.43213 5.48239 5.64617 5.69182 5.75688 6.10007 6.19200 6.28173 6.39478 6.41613 6.61278 6.89307 7.40993 7.47290 7.49695 7.64201 7.74986 8.19355 8.24946 9.17132 9.76834 10.41809 11.34989 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.019932 B = 0.004497 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.420334 B = 6224.765116 C = 6913.661702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.007 4.007 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.174 3.826 11 C -0.154 4.154 12 C 0.126 3.874 13 H 0.094 0.906 14 N -0.692 5.692 15 C 0.561 3.439 16 O -0.539 6.539 17 C -0.150 4.150 18 C 0.128 3.872 19 N -0.457 5.457 20 C 0.093 3.907 21 C 0.040 3.960 22 F -0.127 7.127 23 C -0.053 4.053 24 C 0.125 3.875 25 H 0.252 0.748 26 H 0.047 0.953 27 H 0.046 0.954 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.403 0.597 31 H 0.171 0.829 32 H 0.172 0.828 33 H 0.160 0.840 34 H 0.030 0.970 35 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.437 -11.631 -10.443 15.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.049 3.951 11 C -0.193 4.193 12 C 0.021 3.979 13 H 0.112 0.888 14 N -0.342 5.342 15 C 0.346 3.654 16 O -0.417 6.417 17 C -0.155 4.155 18 C -0.030 4.030 19 N -0.164 5.164 20 C -0.065 4.065 21 C 0.018 3.982 22 F -0.106 7.106 23 C -0.081 4.081 24 C -0.002 4.002 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.239 0.761 31 H 0.188 0.812 32 H 0.189 0.811 33 H 0.178 0.822 34 H 0.048 0.952 35 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.505 -11.366 -10.425 15.432 hybrid contribution 0.874 0.532 0.064 1.026 sum 0.370 -10.834 -10.361 14.996 Atomic orbital electron populations 1.69937 1.04818 1.25071 1.57236 1.24765 0.95717 0.97585 1.02227 0.86134 0.78643 0.83512 0.77575 1.21626 1.21652 1.20731 1.19051 0.90441 0.82349 1.43681 0.90539 1.44486 1.01454 0.99861 1.87311 1.21197 0.84574 0.87883 1.01403 1.23244 0.95528 1.00063 1.00430 1.22244 0.97814 0.99797 0.78019 0.88825 1.45766 1.47655 1.33056 1.07747 1.17830 0.80028 0.81865 0.85672 1.90772 1.42613 1.36514 1.71832 1.21018 1.00709 0.98415 0.95352 1.23210 0.94616 0.94856 0.90331 1.67789 1.18430 1.23390 1.06809 1.23149 0.91969 0.89812 1.01571 1.18663 0.97176 0.93084 0.89247 1.91544 1.76000 1.68725 1.74317 1.21778 0.96469 0.98307 0.91509 1.21949 0.94686 0.86366 0.97229 0.93744 0.93523 0.93627 0.91453 0.90711 0.76065 0.81203 0.81100 0.82214 0.95220 0.93894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.96 10.31 55.49 0.57 -25.38 16 2 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 3 Si 0.91 21.71 29.55 -169.99 -5.02 16.68 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.23 -6.14 10.28 -15.06 -0.15 -6.29 16 8 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.60 -14.60 3.39 -170.07 -0.58 -15.18 16 10 C 0.17 3.86 5.36 -3.07 -0.02 3.85 16 11 C -0.15 -2.54 6.55 -24.90 -0.16 -2.71 16 12 C 0.13 2.12 3.43 -65.78 -0.23 1.89 16 13 H 0.09 1.51 7.54 -51.93 -0.39 1.11 16 14 N -0.69 -10.56 5.14 -52.66 -0.27 -10.83 16 15 C 0.56 8.60 7.78 -12.33 -0.10 8.50 16 16 O -0.54 -9.72 16.06 5.32 0.09 -9.63 16 17 C -0.15 -1.92 5.89 -104.83 -0.62 -2.54 16 18 C 0.13 1.53 10.71 -17.14 -0.18 1.35 16 19 N -0.46 -5.44 10.34 -12.86 -0.13 -5.58 16 20 C 0.09 0.94 11.16 -17.39 -0.19 0.74 16 21 C 0.04 0.42 7.33 -39.33 -0.29 0.13 16 22 F -0.13 -1.33 17.28 2.25 0.04 -1.29 16 23 C -0.05 -0.63 9.70 -38.80 -0.38 -1.01 16 24 C 0.12 2.54 6.93 -2.52 -0.02 2.52 16 25 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 26 H 0.05 1.12 7.38 -51.93 -0.38 0.74 16 27 H 0.05 1.15 7.50 -51.93 -0.39 0.76 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.40 5.70 6.73 -40.82 -0.27 5.43 16 31 H 0.17 1.81 6.42 -52.49 -0.34 1.47 16 32 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.16 1.81 7.73 -52.49 -0.41 1.40 16 34 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 304.10 15.07 4.58 4.58 Total: -1.00 -30.90 304.10 -7.00 -37.89 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -3.84 Total: 2.58 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: -2.43 Total: 6.16 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: -0.41 Total: -56.97 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.09 Total: -9.63 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.90 -7.00 -37.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010535128.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.370 kcal (2) G-P(sol) polarization free energy of solvation -30.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds