Wall clock time and date at job start Wed Apr 15 2020 11:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86794 * 119.99823 * 2 1 4 4 H 1.48505 * 109.46886 * 269.99877 * 3 2 1 5 5 H 1.48497 * 109.47251 * 29.99995 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00169 * 3 2 1 7 7 C 1.38814 * 120.00068 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00274 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99655 * 0.02562 * 7 2 1 10 10 C 1.47015 * 125.65004 * 359.97135 * 9 7 2 11 11 C 1.54325 * 107.27065 * 178.98904 * 10 9 7 12 12 C 1.55157 * 102.94374 * 337.80787 * 11 10 9 13 13 H 1.09001 * 111.00846 * 153.57645 * 12 11 10 14 14 N 1.46502 * 111.00342 * 277.43173 * 12 11 10 15 15 C 1.34778 * 119.99933 * 204.99872 * 14 12 11 16 16 O 1.21556 * 120.00092 * 359.97438 * 15 14 12 17 17 C 1.47844 * 120.00140 * 179.97438 * 15 14 12 18 18 C 1.39555 * 120.54880 * 359.71941 * 17 15 14 19 19 N 1.31651 * 120.62469 * 179.72990 * 18 17 15 20 20 C 1.31945 * 121.90606 * 0.58338 * 19 18 17 21 21 C 1.38532 * 121.04729 * 359.68112 * 20 19 18 22 22 F 1.35098 * 120.37540 * 179.97438 * 21 20 19 23 23 C 1.38620 * 119.24816 * 0.02562 * 21 20 19 24 24 C 1.47425 * 125.64112 * 180.02562 * 9 7 2 25 25 H 0.97001 * 120.00422 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.88350 * 59.57113 * 10 9 7 27 27 H 1.08998 * 109.88602 * 298.40779 * 10 9 7 28 28 H 1.08996 * 110.72124 * 219.44887 * 11 10 9 29 29 H 1.08993 * 110.72326 * 96.17079 * 11 10 9 30 30 H 0.96994 * 120.00503 * 24.99476 * 14 12 11 31 31 H 1.08001 * 119.68462 * 0.02562 * 18 17 15 32 32 H 1.07998 * 119.47825 * 179.70229 * 20 19 18 33 33 H 1.07999 * 120.86472 * 180.02562 * 23 21 20 34 34 H 1.08999 * 110.36633 * 85.25018 * 24 9 7 35 35 H 1.08996 * 110.37033 * 322.91399 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1375 -2.5328 0.0006 11 6 -0.4485 -4.0441 -0.0254 12 6 0.8519 -4.6565 -0.6098 13 1 0.9837 -5.6856 -0.2755 14 7 0.8586 -4.5767 -2.0726 15 6 1.5905 -5.4506 -2.7917 16 8 2.2453 -6.3047 -2.2266 17 6 1.5969 -5.3706 -4.2680 18 6 0.8448 -4.3984 -4.9289 19 7 0.8535 -4.3224 -6.2432 20 6 1.5552 -5.1577 -6.9853 21 6 2.3240 -6.1544 -6.4069 22 9 3.0368 -7.0027 -7.1799 23 6 2.3527 -6.2722 -5.0260 24 6 1.9335 -3.7311 0.0016 25 1 -0.4851 0.8400 -0.0004 26 1 -0.5576 -2.0526 -0.8832 27 1 -0.5544 -2.0840 0.9022 28 1 -1.2984 -4.2519 -0.6754 29 1 -0.6317 -4.4176 0.9820 30 1 0.3364 -3.8951 -2.5236 31 1 0.2537 -3.6988 -4.3565 32 1 1.5301 -5.0627 -8.0608 33 1 2.9434 -7.0394 -4.5476 34 1 2.1662 -4.0414 1.0203 35 1 2.8330 -3.7409 -0.6138 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001010535128.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:40 Heat of formation + Delta-G solvation = -34.068790 kcal Electronic energy + Delta-G solvation = -21245.662362 eV Core-core repulsion = 17772.254560 eV Total energy + Delta-G solvation = -3473.407802 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.10414 -41.75241 -40.35801 -38.81083 -35.52752 -33.99239 -33.55208 -32.11496 -30.90472 -28.99864 -26.65869 -25.72915 -24.78056 -22.50094 -21.88670 -21.37313 -19.59119 -18.80174 -18.53549 -18.04424 -17.22740 -17.21288 -16.98544 -16.62020 -16.11469 -15.65932 -15.50613 -15.00075 -14.83143 -14.53215 -14.36162 -13.98103 -13.82753 -13.61624 -13.43294 -12.90016 -12.79252 -12.30474 -12.13029 -12.01630 -11.80113 -11.58736 -11.53202 -11.14878 -10.71059 -10.70645 -10.27895 -10.08145 -8.84834 -7.84065 -5.17811 -0.65936 -0.19544 1.47325 1.47660 1.56239 1.63211 1.96391 2.50107 2.54935 2.83313 3.13155 3.35219 3.50707 3.56759 3.62149 3.68817 3.80504 3.96557 4.07696 4.31457 4.37997 4.61186 4.70242 4.74047 4.75188 4.90476 4.98018 5.06457 5.33987 5.46515 5.49458 5.69796 5.79571 6.21738 6.41845 6.54235 7.03955 7.13676 7.78957 8.42372 9.25649 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.019932 B = 0.004497 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.420334 B = 6224.765116 C = 6913.661702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.056 4.056 3 Si 0.971 3.029 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.275 1.275 7 C -0.241 4.241 8 H 0.073 0.927 9 N -0.621 5.621 10 C 0.181 3.819 11 C -0.133 4.133 12 C 0.140 3.860 13 H 0.109 0.891 14 N -0.691 5.691 15 C 0.565 3.435 16 O -0.569 6.569 17 C -0.163 4.163 18 C 0.131 3.869 19 N -0.472 5.472 20 C 0.107 3.893 21 C 0.043 3.957 22 F -0.124 7.124 23 C -0.055 4.055 24 C 0.121 3.879 25 H 0.247 0.753 26 H 0.023 0.977 27 H 0.009 0.991 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.409 0.591 31 H 0.179 0.821 32 H 0.205 0.795 33 H 0.161 0.839 34 H 0.034 0.966 35 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.471 -12.377 -11.745 17.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.250 4.250 3 Si 0.800 3.200 4 H -0.213 1.213 5 H -0.220 1.220 6 H -0.201 1.201 7 C -0.371 4.371 8 H 0.091 0.909 9 N -0.348 5.348 10 C 0.057 3.943 11 C -0.172 4.172 12 C 0.034 3.966 13 H 0.127 0.873 14 N -0.341 5.341 15 C 0.352 3.648 16 O -0.449 6.449 17 C -0.168 4.168 18 C -0.027 4.027 19 N -0.180 5.180 20 C -0.051 4.051 21 C 0.021 3.979 22 F -0.103 7.103 23 C -0.082 4.082 24 C -0.005 4.005 25 H 0.057 0.943 26 H 0.041 0.959 27 H 0.027 0.973 28 H 0.115 0.885 29 H 0.111 0.889 30 H 0.246 0.754 31 H 0.196 0.804 32 H 0.222 0.778 33 H 0.178 0.822 34 H 0.052 0.948 35 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -0.536 -12.132 -11.737 16.888 hybrid contribution 0.940 0.728 0.415 1.259 sum 0.405 -11.404 -11.322 16.075 Atomic orbital electron populations 1.70127 1.05849 1.25217 1.58104 1.25467 0.96554 1.00353 1.02576 0.85200 0.77626 0.79799 0.77422 1.21333 1.21965 1.20067 1.19328 0.90676 0.83863 1.43188 0.90949 1.44709 1.02509 1.00482 1.87091 1.20995 0.83333 0.91514 0.98504 1.23099 0.96353 0.95457 1.02292 1.22057 0.96199 0.99513 0.78790 0.87276 1.45729 1.47829 1.33321 1.07205 1.18118 0.79032 0.81039 0.86634 1.90753 1.43808 1.37701 1.72673 1.20772 1.02428 0.99808 0.93805 1.23322 0.94198 0.94501 0.90634 1.67876 1.19270 1.24152 1.06689 1.23678 0.90137 0.88361 1.02962 1.18619 0.97261 0.93275 0.88712 1.91557 1.75948 1.68679 1.74103 1.21855 0.96142 0.98039 0.92199 1.22079 0.95311 0.85594 0.97535 0.94325 0.95859 0.97268 0.88523 0.88945 0.75405 0.80444 0.77792 0.82181 0.94824 0.95256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.07 10.31 21.65 0.22 -53.84 16 2 C -0.06 -3.08 5.49 84.86 0.47 -2.61 16 3 Si 0.97 44.95 29.55 68.60 2.03 46.98 16 4 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 5 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 6 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.24 -13.23 10.28 84.03 0.86 -12.36 16 8 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 9 N -0.62 -30.29 3.39 -691.99 -2.35 -32.64 16 10 C 0.18 8.10 5.36 86.73 0.47 8.56 16 11 C -0.13 -4.17 6.55 31.78 0.21 -3.96 16 12 C 0.14 4.48 3.43 46.39 0.16 4.63 16 13 H 0.11 3.26 7.54 -2.39 -0.02 3.24 16 14 N -0.69 -20.28 5.14 -438.81 -2.26 -22.53 16 15 C 0.56 16.79 7.78 86.79 0.68 17.46 16 16 O -0.57 -20.10 16.06 -3.89 -0.06 -20.16 16 17 C -0.16 -4.00 5.89 -20.00 -0.12 -4.11 16 18 C 0.13 2.94 10.71 85.04 0.91 3.85 16 19 N -0.47 -10.24 10.34 -194.60 -2.01 -12.26 16 20 C 0.11 1.85 11.16 84.75 0.95 2.80 16 21 C 0.04 0.82 7.33 22.43 0.16 0.98 16 22 F -0.12 -2.31 17.28 44.97 0.78 -1.54 16 23 C -0.06 -1.23 9.70 22.78 0.22 -1.01 16 24 C 0.12 4.89 6.93 86.86 0.60 5.50 16 25 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 26 H 0.02 1.13 7.38 -2.39 -0.02 1.12 16 27 H 0.01 0.47 7.50 -2.39 -0.02 0.45 16 28 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 29 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 30 H 0.41 11.12 6.73 -92.71 -0.62 10.50 16 31 H 0.18 3.56 6.42 -2.91 -0.02 3.55 16 32 H 0.21 2.07 8.06 -2.91 -0.02 2.04 16 33 H 0.16 3.49 7.73 -2.91 -0.02 3.47 16 34 H 0.03 1.34 8.14 -2.39 -0.02 1.33 16 35 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -66.61 304.10 2.42 -64.19 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: 0.51 Total: 12.07 kcal Atomic # 6 Polarization: 14.16 SS G_CDS: 5.56 Total: 19.72 kcal Atomic # 7 Polarization: -114.88 SS G_CDS: -6.39 Total: -121.27 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.06 Total: -20.16 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.78 Total: -1.54 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -66.61 2.42 -64.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010535128.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.123 kcal (2) G-P(sol) polarization free energy of solvation -66.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds