Wall clock time and date at job start Wed Apr 15 2020 11:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 119.99976 * 2 1 4 4 H 1.48506 * 109.47029 * 240.00047 * 3 2 1 5 5 H 1.48494 * 109.47260 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47356 * 120.00509 * 3 2 1 7 7 C 1.38811 * 120.00219 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00061 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99968 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00051 * 179.97438 * 9 7 2 11 11 H 1.08993 * 112.90929 * 336.25155 * 10 9 7 12 12 C 1.53962 * 113.66387 * 107.55366 * 10 9 7 13 13 C 1.53782 * 87.11063 * 139.88885 * 12 10 9 14 14 H 1.09004 * 113.68975 * 220.07786 * 13 12 10 15 15 N 1.46501 * 113.61142 * 89.18830 * 13 12 10 16 16 C 1.34769 * 120.00014 * 107.50467 * 15 13 12 17 17 O 1.21570 * 120.00296 * 359.97438 * 16 15 13 18 18 C 1.47733 * 120.00173 * 179.97438 * 16 15 13 19 19 C 1.40153 * 120.52949 * 179.71750 * 18 16 15 20 20 C 1.38160 * 118.31772 * 179.73234 * 19 18 16 21 21 C 1.38746 * 119.28197 * 0.56555 * 20 19 18 22 22 F 1.35106 * 119.48734 * 179.67272 * 21 20 19 23 23 N 1.32149 * 121.02037 * 359.69615 * 21 20 19 24 24 C 1.31686 * 121.83737 * 0.02562 * 23 21 20 25 25 C 1.53781 * 87.08260 * 334.63747 * 13 12 10 26 26 H 0.97004 * 119.99679 * 359.97438 * 1 2 3 27 27 H 0.97002 * 120.00151 * 0.02562 * 9 7 2 28 28 H 1.08997 * 113.53543 * 25.33559 * 12 10 9 29 29 H 1.08998 * 113.73879 * 254.47157 * 12 10 9 30 30 H 0.97001 * 119.99973 * 287.49325 * 15 13 12 31 31 H 1.07994 * 120.84042 * 0.02562 * 19 18 16 32 32 H 1.07997 * 120.35344 * 180.23931 * 20 19 18 33 33 H 1.08006 * 119.69854 * 179.97438 * 24 23 21 34 34 H 1.09002 * 113.61445 * 139.98212 * 25 13 12 35 35 H 1.09002 * 113.61408 * 270.79943 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 1 3.0658 -3.5645 -0.4067 12 6 1.9999 -4.4052 1.3425 13 6 1.8463 -5.6995 0.5264 14 1 1.1309 -6.4033 0.9520 15 7 3.1228 -6.3275 0.1765 16 6 3.5058 -7.4637 0.7918 17 8 2.7923 -7.9673 1.6375 18 6 4.7927 -8.0973 0.4385 19 6 5.2047 -9.2758 1.0755 20 6 6.4139 -9.8324 0.7058 21 6 7.1801 -9.2062 -0.2668 22 9 8.3664 -9.7434 -0.6268 23 7 6.7677 -8.0924 -0.8461 24 6 5.6203 -7.5287 -0.5301 25 6 1.2597 -4.8285 -0.5971 26 1 -0.4850 0.8401 0.0004 27 1 0.3556 -2.3881 -0.0005 28 1 1.1221 -4.1590 1.9401 29 1 2.9275 -4.3559 1.9127 30 1 3.6922 -5.9256 -0.4981 31 1 4.5902 -9.7396 1.8328 32 1 6.7614 -10.7422 1.1726 33 1 5.3172 -6.6180 -1.0252 34 1 1.5905 -5.1205 -1.5938 35 1 0.1794 -4.6993 -0.5306 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020029756.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:53 Heat of formation + Delta-G solvation = -3.939459 kcal Electronic energy + Delta-G solvation = -20425.833508 eV Core-core repulsion = 16953.732212 eV Total energy + Delta-G solvation = -3472.101296 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.48817 -40.96105 -39.56173 -37.93352 -34.24157 -33.18256 -32.97184 -31.30299 -29.81297 -25.35813 -25.19327 -24.54497 -24.07080 -22.28646 -21.21963 -19.17139 -18.67824 -18.08710 -17.59423 -17.08978 -16.54495 -15.90973 -15.35700 -15.16757 -14.91224 -14.72254 -14.14217 -13.87904 -13.80016 -13.51635 -13.42061 -13.27959 -12.71525 -12.21088 -11.91892 -11.70159 -10.92767 -10.84394 -10.57149 -10.52385 -10.39953 -10.28138 -10.00083 -9.92575 -9.62389 -9.55724 -8.98838 -8.88861 -7.03055 -5.83609 -3.13035 0.03928 0.57926 2.47049 2.91702 3.00834 3.31268 3.40319 3.45179 3.45943 3.92124 4.21687 4.27992 4.48633 4.54542 4.81533 4.91566 5.05910 5.13005 5.35469 5.37875 5.43705 5.49307 5.80487 5.82821 5.98607 6.04570 6.19159 6.25135 6.37764 6.54973 6.60950 6.99229 7.03217 7.36948 7.63364 8.01776 8.34653 9.46043 10.02637 10.36837 11.38540 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.026010 B = 0.003186 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.233451 B = 8786.176990 C = 9569.181096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.011 4.011 3 Si 0.908 3.092 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.248 4.248 8 H 0.071 0.929 9 N -0.711 5.711 10 C 0.166 3.834 11 H 0.074 0.926 12 C -0.176 4.176 13 C 0.115 3.885 14 H 0.099 0.901 15 N -0.698 5.698 16 C 0.566 3.434 17 O -0.534 6.534 18 C -0.195 4.195 19 C 0.011 3.989 20 C -0.200 4.200 21 C 0.327 3.673 22 F -0.108 7.108 23 N -0.515 5.515 24 C 0.174 3.826 25 C -0.159 4.159 26 H 0.257 0.743 27 H 0.386 0.614 28 H 0.087 0.913 29 H 0.058 0.942 30 H 0.400 0.600 31 H 0.160 0.840 32 H 0.156 0.844 33 H 0.173 0.827 34 H 0.065 0.935 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.637 -19.899 -0.236 22.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.379 4.379 8 H 0.089 0.911 9 N -0.349 5.349 10 C 0.053 3.947 11 H 0.092 0.908 12 C -0.219 4.219 13 C 0.010 3.990 14 H 0.117 0.883 15 N -0.348 5.348 16 C 0.351 3.649 17 O -0.411 6.411 18 C -0.200 4.200 19 C -0.015 4.015 20 C -0.221 4.221 21 C 0.174 3.826 22 F -0.086 7.086 23 N -0.229 5.229 24 C 0.016 3.984 25 C -0.199 4.199 26 H 0.067 0.933 27 H 0.220 0.780 28 H 0.106 0.894 29 H 0.077 0.923 30 H 0.235 0.765 31 H 0.178 0.822 32 H 0.174 0.826 33 H 0.190 0.810 34 H 0.084 0.916 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.787 -19.695 -0.292 22.457 hybrid contribution 0.254 0.687 0.219 0.765 sum 11.041 -19.007 -0.073 21.981 Atomic orbital electron populations 1.69645 1.05167 1.25978 1.57130 1.24769 0.95521 0.97831 1.02587 0.86265 0.78564 0.83426 0.77902 1.21170 1.21648 1.21191 1.19244 0.91046 0.84213 1.43419 0.91124 1.42384 1.05782 0.99814 1.86919 1.21659 0.95098 0.85260 0.92640 0.90804 1.24363 1.02172 0.94974 1.00351 1.21896 0.84430 0.94220 0.98492 0.88286 1.45631 1.22427 1.25055 1.41714 1.17803 0.84862 0.80653 0.81559 1.90795 1.54354 1.63610 1.32377 1.21124 0.97987 0.99184 1.01726 1.21661 0.93335 0.91492 0.95017 1.21855 0.96304 1.03693 1.00239 1.18431 0.82404 0.89861 0.91897 1.91658 1.42834 1.83544 1.90613 1.67032 1.17435 1.10156 1.28254 1.22809 0.86654 0.97293 0.91646 1.23879 1.01790 0.97097 0.97133 0.93321 0.77965 0.89406 0.92310 0.76461 0.82210 0.82606 0.80996 0.91631 0.88832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.52 13.06 55.49 0.72 -26.80 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 21.89 29.55 -169.99 -5.02 16.86 16 4 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 6 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.25 -6.67 9.97 -15.06 -0.15 -6.82 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.71 -17.01 5.40 -52.54 -0.28 -17.29 16 10 C 0.17 3.00 4.37 -67.02 -0.29 2.71 16 11 H 0.07 1.28 8.10 -51.93 -0.42 0.86 16 12 C -0.18 -2.91 7.68 -25.82 -0.20 -3.11 16 13 C 0.11 1.58 4.32 -67.12 -0.29 1.29 16 14 H 0.10 1.43 7.46 -51.93 -0.39 1.05 16 15 N -0.70 -8.00 5.22 -53.99 -0.28 -8.28 16 16 C 0.57 6.89 7.78 -12.38 -0.10 6.80 16 17 O -0.53 -8.28 16.02 5.30 0.08 -8.19 16 18 C -0.19 -1.89 5.89 -104.83 -0.62 -2.50 16 19 C 0.01 0.09 9.71 -38.89 -0.38 -0.29 16 20 C -0.20 -1.45 10.07 -39.42 -0.40 -1.85 16 21 C 0.33 3.10 8.41 -17.23 -0.14 2.96 16 22 F -0.11 -1.04 17.29 2.25 0.04 -1.00 16 23 N -0.51 -5.43 10.36 -13.22 -0.14 -5.57 16 24 C 0.17 1.57 10.71 -17.14 -0.18 1.39 16 25 C -0.16 -2.33 7.57 -25.92 -0.20 -2.52 16 26 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 27 H 0.39 9.83 7.92 -40.82 -0.32 9.51 16 28 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.40 3.62 6.76 -40.82 -0.28 3.35 16 31 H 0.16 1.17 7.73 -52.49 -0.41 0.76 16 32 H 0.16 0.68 8.06 -52.49 -0.42 0.26 16 33 H 0.17 1.13 6.42 -52.48 -0.34 0.79 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.09 1.42 8.12 -51.93 -0.42 0.99 16 LS Contribution 311.34 15.07 4.69 4.69 Total: -1.00 -32.17 311.34 -7.04 -39.20 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -3.81 Total: 8.73 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -3.04 Total: -2.34 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: 0.02 Total: -57.95 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: 0.08 Total: -8.19 kcal Atomic # 9 Polarization: -1.04 SS G_CDS: 0.04 Total: -1.00 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.17 -7.04 -39.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020029756.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.266 kcal (2) G-P(sol) polarization free energy of solvation -32.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds