Wall clock time and date at job start Wed Apr 15 2020 11:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 119.99976 * 2 1 4 4 H 1.48506 * 109.47029 * 240.00047 * 3 2 1 5 5 H 1.48494 * 109.47260 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47356 * 120.00509 * 3 2 1 7 7 C 1.38811 * 120.00219 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00061 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99968 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00051 * 179.97438 * 9 7 2 11 11 H 1.08993 * 112.90929 * 336.25155 * 10 9 7 12 12 C 1.53962 * 113.66387 * 107.55366 * 10 9 7 13 13 C 1.53782 * 87.11063 * 139.88885 * 12 10 9 14 14 H 1.09004 * 113.68975 * 220.07786 * 13 12 10 15 15 N 1.46501 * 113.61142 * 89.18830 * 13 12 10 16 16 C 1.34769 * 120.00014 * 107.50467 * 15 13 12 17 17 O 1.21570 * 120.00296 * 359.97438 * 16 15 13 18 18 C 1.47733 * 120.00173 * 179.97438 * 16 15 13 19 19 C 1.40153 * 120.52949 * 179.71750 * 18 16 15 20 20 C 1.38160 * 118.31772 * 179.73234 * 19 18 16 21 21 C 1.38746 * 119.28197 * 0.56555 * 20 19 18 22 22 F 1.35106 * 119.48734 * 179.67272 * 21 20 19 23 23 N 1.32149 * 121.02037 * 359.69615 * 21 20 19 24 24 C 1.31686 * 121.83737 * 0.02562 * 23 21 20 25 25 C 1.53781 * 87.08260 * 334.63747 * 13 12 10 26 26 H 0.97004 * 119.99679 * 359.97438 * 1 2 3 27 27 H 0.97002 * 120.00151 * 0.02562 * 9 7 2 28 28 H 1.08997 * 113.53543 * 25.33559 * 12 10 9 29 29 H 1.08998 * 113.73879 * 254.47157 * 12 10 9 30 30 H 0.97001 * 119.99973 * 287.49325 * 15 13 12 31 31 H 1.07994 * 120.84042 * 0.02562 * 19 18 16 32 32 H 1.07997 * 120.35344 * 180.23931 * 20 19 18 33 33 H 1.08006 * 119.69854 * 179.97438 * 24 23 21 34 34 H 1.09002 * 113.61445 * 139.98212 * 25 13 12 35 35 H 1.09002 * 113.61408 * 270.79943 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 1 3.0658 -3.5645 -0.4067 12 6 1.9999 -4.4052 1.3425 13 6 1.8463 -5.6995 0.5264 14 1 1.1309 -6.4033 0.9520 15 7 3.1228 -6.3275 0.1765 16 6 3.5058 -7.4637 0.7918 17 8 2.7923 -7.9673 1.6375 18 6 4.7927 -8.0973 0.4385 19 6 5.2047 -9.2758 1.0755 20 6 6.4139 -9.8324 0.7058 21 6 7.1801 -9.2062 -0.2668 22 9 8.3664 -9.7434 -0.6268 23 7 6.7677 -8.0924 -0.8461 24 6 5.6203 -7.5287 -0.5301 25 6 1.2597 -4.8285 -0.5971 26 1 -0.4850 0.8401 0.0004 27 1 0.3556 -2.3881 -0.0005 28 1 1.1221 -4.1590 1.9401 29 1 2.9275 -4.3559 1.9127 30 1 3.6922 -5.9256 -0.4981 31 1 4.5902 -9.7396 1.8328 32 1 6.7614 -10.7422 1.1726 33 1 5.3172 -6.6180 -1.0252 34 1 1.5905 -5.1205 -1.5938 35 1 0.1794 -4.6993 -0.5306 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020029756.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:53 Heat of formation + Delta-G solvation = -26.557961 kcal Electronic energy + Delta-G solvation = -20426.814320 eV Core-core repulsion = 16953.732212 eV Total energy + Delta-G solvation = -3473.082108 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.19914 -41.80513 -40.57263 -39.13283 -35.80932 -34.36989 -33.88261 -32.37793 -31.41388 -26.69464 -26.47910 -25.62817 -25.02560 -23.73018 -22.18428 -20.44575 -19.50694 -19.13940 -18.85290 -18.27469 -17.26728 -17.15263 -16.57907 -16.13294 -16.11421 -15.75421 -15.51616 -15.28240 -14.81753 -14.38523 -14.22025 -14.13933 -14.05864 -13.52999 -13.40516 -13.28816 -12.76985 -12.58789 -12.20233 -11.83796 -11.73116 -11.40871 -11.24545 -11.18881 -10.81803 -10.79374 -10.31675 -10.01713 -8.96959 -7.93414 -5.21520 -0.68713 -0.05373 1.49467 1.51548 1.57547 1.60777 1.96289 2.34083 2.54860 2.58077 3.26463 3.38306 3.51014 3.64022 3.70679 3.78918 3.86160 3.98742 4.14977 4.34582 4.35183 4.47716 4.68686 4.75519 4.85861 4.94691 4.95402 5.15325 5.21447 5.24710 5.35124 5.52276 5.69231 6.28815 6.34386 6.44145 7.07719 7.35324 8.12697 8.34188 9.29692 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.026010 B = 0.003186 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.233451 B = 8786.176990 C = 9569.181096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.076 4.076 3 Si 0.970 3.030 4 H -0.276 1.276 5 H -0.299 1.299 6 H -0.280 1.280 7 C -0.244 4.244 8 H 0.079 0.921 9 N -0.727 5.727 10 C 0.150 3.850 11 H 0.085 0.915 12 C -0.173 4.173 13 C 0.136 3.864 14 H 0.097 0.903 15 N -0.690 5.690 16 C 0.570 3.430 17 O -0.569 6.569 18 C -0.203 4.203 19 C 0.012 3.988 20 C -0.183 4.183 21 C 0.315 3.685 22 F -0.112 7.112 23 N -0.540 5.540 24 C 0.178 3.822 25 C -0.143 4.143 26 H 0.251 0.749 27 H 0.374 0.626 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.413 0.587 31 H 0.170 0.830 32 H 0.188 0.812 33 H 0.193 0.807 34 H 0.089 0.911 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.252 -21.214 -0.555 24.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.268 4.268 3 Si 0.799 3.201 4 H -0.202 1.202 5 H -0.225 1.225 6 H -0.206 1.206 7 C -0.376 4.376 8 H 0.097 0.903 9 N -0.364 5.364 10 C 0.040 3.960 11 H 0.103 0.897 12 C -0.215 4.215 13 C 0.030 3.970 14 H 0.115 0.885 15 N -0.341 5.341 16 C 0.357 3.643 17 O -0.449 6.449 18 C -0.208 4.208 19 C -0.014 4.014 20 C -0.203 4.203 21 C 0.162 3.838 22 F -0.091 7.091 23 N -0.255 5.255 24 C 0.020 3.980 25 C -0.182 4.182 26 H 0.059 0.941 27 H 0.206 0.794 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.252 0.748 31 H 0.188 0.812 32 H 0.205 0.795 33 H 0.210 0.790 34 H 0.107 0.893 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 12.471 -21.057 -0.630 24.481 hybrid contribution -0.177 0.976 0.339 1.048 sum 12.294 -20.080 -0.292 23.547 Atomic orbital electron populations 1.69800 1.06627 1.26099 1.59538 1.25546 0.96316 1.01096 1.03839 0.85262 0.77215 0.79393 0.78198 1.20164 1.22497 1.20616 1.19680 0.91618 0.85368 1.40959 0.90301 1.42588 1.05461 1.01059 1.87341 1.22050 0.95778 0.84007 0.94188 0.89683 1.24200 1.01405 0.96450 0.99478 1.21544 0.85370 0.93062 0.97072 0.88516 1.45501 1.21782 1.24908 1.41928 1.18091 0.85219 0.80271 0.80686 1.90784 1.55601 1.64566 1.33974 1.20954 0.97054 0.99993 1.02818 1.21861 0.93684 0.90988 0.94865 1.22078 0.95170 1.04130 0.98951 1.18720 0.82569 0.90003 0.92477 1.91648 1.43152 1.83569 1.90729 1.67025 1.18143 1.11065 1.29219 1.23054 0.86001 0.97675 0.91276 1.23689 1.01090 0.94954 0.98501 0.94073 0.79368 0.91075 0.92439 0.74845 0.81235 0.79478 0.79030 0.89282 0.89373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.40 13.06 21.65 0.28 -58.11 16 2 C -0.08 -4.25 5.50 84.86 0.47 -3.78 16 3 Si 0.97 45.14 29.55 68.60 2.03 47.16 16 4 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 6 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 7 C -0.24 -13.05 9.97 84.03 0.84 -12.21 16 8 H 0.08 3.99 7.83 -2.91 -0.02 3.96 16 9 N -0.73 -34.76 5.40 -320.15 -1.73 -36.49 16 10 C 0.15 5.24 4.37 45.58 0.20 5.44 16 11 H 0.09 2.78 8.10 -2.39 -0.02 2.76 16 12 C -0.17 -5.59 7.68 31.18 0.24 -5.35 16 13 C 0.14 3.52 4.32 45.52 0.20 3.71 16 14 H 0.10 2.67 7.46 -2.38 -0.02 2.65 16 15 N -0.69 -14.28 5.22 -443.01 -2.31 -16.59 16 16 C 0.57 12.83 7.78 86.75 0.67 13.51 16 17 O -0.57 -16.90 16.02 -3.94 -0.06 -16.96 16 18 C -0.20 -3.50 5.89 -20.00 -0.12 -3.62 16 19 C 0.01 0.17 9.71 22.72 0.22 0.39 16 20 C -0.18 -2.15 10.07 22.37 0.23 -1.93 16 21 C 0.31 5.34 8.41 84.77 0.71 6.06 16 22 F -0.11 -1.99 17.29 44.97 0.78 -1.21 16 23 N -0.54 -10.42 10.36 -195.73 -2.03 -12.45 16 24 C 0.18 2.82 10.71 85.02 0.91 3.73 16 25 C -0.14 -3.92 7.57 31.12 0.24 -3.68 16 26 H 0.25 14.73 8.31 -92.71 -0.77 13.95 16 27 H 0.37 19.38 7.92 -92.71 -0.73 18.65 16 28 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 29 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.41 6.32 6.76 -92.71 -0.63 5.70 16 31 H 0.17 2.08 7.73 -2.91 -0.02 2.06 16 32 H 0.19 0.96 8.06 -2.91 -0.02 0.93 16 33 H 0.19 2.01 6.42 -2.91 -0.02 1.99 16 34 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.09 2.57 8.12 -2.39 -0.02 2.56 16 Total: -1.00 -69.24 311.34 1.54 -67.69 By element: Atomic # 1 Polarization: 24.92 SS G_CDS: -0.21 Total: 24.71 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: 4.80 Total: 2.26 kcal Atomic # 7 Polarization: -117.86 SS G_CDS: -5.79 Total: -123.65 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: -0.06 Total: -16.96 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.78 Total: -1.21 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Total: -69.24 1.54 -67.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020029756.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.136 kcal (2) G-P(sol) polarization free energy of solvation -69.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds