Wall clock time and date at job start Wed Apr 15 2020 11:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 120.00286 * 2 1 4 4 H 1.48502 * 109.46719 * 270.00185 * 3 2 1 5 5 H 1.48501 * 109.46900 * 29.99695 * 3 2 1 6 6 H 1.48496 * 109.47206 * 149.99914 * 3 2 1 7 7 C 1.38816 * 119.99796 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99868 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99973 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99610 * 179.97438 * 9 7 2 11 11 H 1.08998 * 112.85403 * 23.80823 * 10 9 7 12 12 C 1.53793 * 113.61160 * 154.99920 * 10 9 7 13 13 C 1.53781 * 87.07845 * 89.11793 * 12 10 9 14 14 H 1.09002 * 113.61228 * 139.98223 * 13 12 10 15 15 N 1.46500 * 113.61339 * 270.80169 * 13 12 10 16 16 C 1.34781 * 119.99985 * 203.47543 * 15 13 12 17 17 O 1.21561 * 119.99631 * 359.97438 * 16 15 13 18 18 C 1.47724 * 119.99979 * 179.97438 * 16 15 13 19 19 C 1.40153 * 120.52886 * 180.02562 * 18 16 15 20 20 C 1.38148 * 118.32204 * 180.02562 * 19 18 16 21 21 C 1.38756 * 119.28776 * 359.97438 * 20 19 18 22 22 F 1.35097 * 119.49516 * 179.97438 * 21 20 19 23 23 N 1.32144 * 121.01112 * 359.97438 * 21 20 19 24 24 C 1.31696 * 121.84236 * 359.70992 * 23 21 20 25 25 C 1.53777 * 113.61724 * 252.49615 * 10 9 7 26 26 H 0.97009 * 120.00044 * 0.02562 * 1 2 3 27 27 H 0.96998 * 119.99795 * 359.97438 * 9 7 2 28 28 H 1.09000 * 113.61258 * 334.56928 * 12 10 9 29 29 H 1.08997 * 113.61168 * 203.66749 * 12 10 9 30 30 H 0.96998 * 120.00149 * 23.46564 * 15 13 12 31 31 H 1.08000 * 120.83790 * 0.02562 * 19 18 16 32 32 H 1.08005 * 120.35870 * 180.02562 * 20 19 18 33 33 H 1.07999 * 119.70358 * 180.31022 * 24 23 21 34 34 H 1.08999 * 113.61947 * 156.34089 * 25 10 9 35 35 H 1.08997 * 113.61348 * 25.43304 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6567 0.0005 11 1 3.0654 -3.5639 0.4060 12 6 1.2599 -4.8288 0.5961 13 6 0.7203 -5.0791 -0.8220 14 1 0.6484 -6.1353 -1.0817 15 7 -0.5047 -4.3345 -1.1236 16 6 -1.3418 -4.7747 -2.0839 17 8 -1.0799 -5.7893 -2.7000 18 6 -2.5773 -4.0241 -2.3877 19 6 -3.4558 -4.4721 -3.3836 20 6 -4.5977 -3.7347 -3.6304 21 6 -4.8364 -2.5851 -2.8909 22 9 -5.9515 -1.8606 -3.1292 23 7 -3.9897 -2.1882 -1.9572 24 6 -2.8919 -2.8619 -1.6829 25 6 1.9990 -4.4022 -1.3432 26 1 -0.4851 0.8401 -0.0004 27 1 0.3554 -2.3880 0.0005 28 1 0.4936 -4.5189 1.3065 29 1 1.8868 -5.6366 0.9737 30 1 -0.7135 -3.5247 -0.6322 31 1 -3.2454 -5.3710 -3.9439 32 1 -5.2975 -4.0500 -4.3902 33 1 -2.2265 -2.5087 -0.9091 34 1 2.8278 -5.0935 -1.4958 35 1 1.8292 -3.7480 -2.1983 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021897724.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:56 Heat of formation + Delta-G solvation = 1.267841 kcal Electronic energy + Delta-G solvation = -21350.476991 eV Core-core repulsion = 17878.601500 eV Total energy + Delta-G solvation = -3471.875491 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.14419 -40.63285 -39.40094 -37.81842 -33.78885 -32.97991 -32.79679 -30.95645 -29.86663 -25.19435 -25.13403 -24.28863 -23.89475 -22.47935 -20.58957 -19.20251 -18.24404 -17.84879 -17.20785 -17.12616 -16.18502 -15.63016 -15.05796 -14.87223 -14.76197 -14.41135 -14.22217 -13.75287 -13.47559 -13.15675 -13.11885 -13.02673 -12.83487 -12.11992 -12.06731 -11.53680 -10.93568 -10.87294 -10.26614 -10.24637 -10.20413 -10.18419 -9.87850 -9.66369 -9.57218 -9.18891 -8.99095 -8.67562 -7.13225 -5.91860 -3.20681 0.42167 0.97100 2.81146 3.23667 3.37885 3.40739 3.43864 3.45267 3.68604 4.31952 4.48462 4.58943 4.67984 4.82304 4.99038 5.17543 5.19002 5.37884 5.43317 5.49474 5.66732 5.79065 5.82994 5.91555 6.07257 6.14809 6.25103 6.38828 6.49855 6.64202 6.73758 7.00550 7.48844 7.61669 7.70098 8.26579 8.33271 9.38035 9.90495 10.23830 11.31148 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.013403 B = 0.006043 C = 0.004358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.638698 B = 4632.490349 C = 6423.405659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.008 4.008 3 Si 0.910 3.090 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.246 4.246 8 H 0.074 0.926 9 N -0.704 5.704 10 C 0.163 3.837 11 H 0.068 0.932 12 C -0.168 4.168 13 C 0.123 3.877 14 H 0.094 0.906 15 N -0.693 5.693 16 C 0.569 3.431 17 O -0.545 6.545 18 C -0.200 4.200 19 C 0.009 3.991 20 C -0.207 4.207 21 C 0.326 3.674 22 F -0.110 7.110 23 N -0.508 5.508 24 C 0.188 3.812 25 C -0.187 4.187 26 H 0.259 0.741 27 H 0.376 0.624 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.407 0.593 31 H 0.157 0.843 32 H 0.153 0.847 33 H 0.180 0.820 34 H 0.079 0.921 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.121 -10.202 -3.859 12.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.205 4.205 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.377 4.377 8 H 0.092 0.908 9 N -0.344 5.344 10 C 0.051 3.949 11 H 0.086 0.914 12 C -0.207 4.207 13 C 0.017 3.983 14 H 0.112 0.888 15 N -0.346 5.346 16 C 0.355 3.645 17 O -0.424 6.424 18 C -0.205 4.205 19 C -0.017 4.017 20 C -0.228 4.228 21 C 0.172 3.828 22 F -0.089 7.089 23 N -0.221 5.221 24 C 0.030 3.970 25 C -0.229 4.229 26 H 0.069 0.931 27 H 0.211 0.789 28 H 0.090 0.910 29 H 0.111 0.889 30 H 0.246 0.754 31 H 0.175 0.825 32 H 0.171 0.829 33 H 0.197 0.803 34 H 0.098 0.902 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.054 -9.936 -3.801 12.240 hybrid contribution -0.058 0.901 -0.378 0.979 sum -6.113 -9.034 -4.179 11.681 Atomic orbital electron populations 1.69566 1.05058 1.26252 1.57112 1.24734 0.95610 0.97787 1.02356 0.86155 0.78674 0.83569 0.77543 1.21698 1.21682 1.20697 1.19265 0.91228 0.83693 1.43533 0.90790 1.42186 1.05029 0.99757 1.87447 1.21229 0.95498 0.85499 0.92677 0.91380 1.23882 1.00803 1.00597 0.95449 1.21829 0.83753 0.95712 0.96957 0.88836 1.45806 1.22070 1.29025 1.37655 1.17803 0.82529 0.84208 0.79960 1.90740 1.75667 1.25283 1.50695 1.21104 0.98437 0.99347 1.01655 1.21577 0.89855 0.97787 0.92505 1.21776 1.00941 0.96319 1.03792 1.18497 0.83711 0.88200 0.92382 1.91635 1.47674 1.77195 1.92399 1.67109 1.04633 1.33365 1.17019 1.23053 0.90552 0.88024 0.95377 1.24298 0.96262 1.00290 1.02016 0.93127 0.78904 0.90976 0.88922 0.75355 0.82509 0.82920 0.80289 0.90247 0.91004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.91 13.06 55.49 0.72 -25.18 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 3 Si 0.91 21.55 29.55 -169.99 -5.02 16.52 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.25 -6.39 9.97 -15.06 -0.15 -6.54 16 8 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 9 N -0.70 -15.95 5.18 -52.63 -0.27 -16.23 16 10 C 0.16 2.97 4.56 -67.12 -0.31 2.67 16 11 H 0.07 1.23 8.10 -51.93 -0.42 0.81 16 12 C -0.17 -2.48 7.58 -25.91 -0.20 -2.68 16 13 C 0.12 1.92 4.30 -67.12 -0.29 1.63 16 14 H 0.09 1.42 7.50 -51.93 -0.39 1.03 16 15 N -0.69 -11.26 5.08 -54.00 -0.27 -11.54 16 16 C 0.57 9.30 7.78 -12.38 -0.10 9.21 16 17 O -0.54 -9.95 16.04 5.31 0.09 -9.86 16 18 C -0.20 -2.92 5.89 -104.83 -0.62 -3.54 16 19 C 0.01 0.11 9.71 -38.90 -0.38 -0.27 16 20 C -0.21 -2.29 10.07 -39.42 -0.40 -2.69 16 21 C 0.33 4.54 8.41 -17.23 -0.14 4.39 16 22 F -0.11 -1.50 17.29 2.25 0.04 -1.46 16 23 N -0.51 -8.28 10.36 -13.22 -0.14 -8.42 16 24 C 0.19 2.93 10.71 -17.14 -0.18 2.75 16 25 C -0.19 -3.12 7.68 -25.92 -0.20 -3.31 16 26 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.38 8.61 5.35 -40.82 -0.22 8.39 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.41 6.85 4.23 -40.82 -0.17 6.68 16 31 H 0.16 1.65 7.73 -52.49 -0.41 1.24 16 32 H 0.15 1.17 8.06 -52.48 -0.42 0.75 16 33 H 0.18 2.87 6.42 -52.49 -0.34 2.53 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 306.12 15.07 4.61 4.61 Total: -1.00 -29.84 306.12 -6.90 -36.74 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -3.60 Total: 13.52 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: -3.05 Total: 1.29 kcal Atomic # 7 Polarization: -61.40 SS G_CDS: 0.04 Total: -61.36 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.09 Total: -9.86 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.84 -6.90 -36.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021897724.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.006 kcal (2) G-P(sol) polarization free energy of solvation -29.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds