Wall clock time and date at job start Wed Apr 15 2020 11:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 120.00286 * 2 1 4 4 H 1.48502 * 109.46719 * 270.00185 * 3 2 1 5 5 H 1.48501 * 109.46900 * 29.99695 * 3 2 1 6 6 H 1.48496 * 109.47206 * 149.99914 * 3 2 1 7 7 C 1.38816 * 119.99796 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99868 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99973 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99610 * 179.97438 * 9 7 2 11 11 H 1.08998 * 112.85403 * 23.80823 * 10 9 7 12 12 C 1.53793 * 113.61160 * 154.99920 * 10 9 7 13 13 C 1.53781 * 87.07845 * 89.11793 * 12 10 9 14 14 H 1.09002 * 113.61228 * 139.98223 * 13 12 10 15 15 N 1.46500 * 113.61339 * 270.80169 * 13 12 10 16 16 C 1.34781 * 119.99985 * 203.47543 * 15 13 12 17 17 O 1.21561 * 119.99631 * 359.97438 * 16 15 13 18 18 C 1.47724 * 119.99979 * 179.97438 * 16 15 13 19 19 C 1.40153 * 120.52886 * 180.02562 * 18 16 15 20 20 C 1.38148 * 118.32204 * 180.02562 * 19 18 16 21 21 C 1.38756 * 119.28776 * 359.97438 * 20 19 18 22 22 F 1.35097 * 119.49516 * 179.97438 * 21 20 19 23 23 N 1.32144 * 121.01112 * 359.97438 * 21 20 19 24 24 C 1.31696 * 121.84236 * 359.70992 * 23 21 20 25 25 C 1.53777 * 113.61724 * 252.49615 * 10 9 7 26 26 H 0.97009 * 120.00044 * 0.02562 * 1 2 3 27 27 H 0.96998 * 119.99795 * 359.97438 * 9 7 2 28 28 H 1.09000 * 113.61258 * 334.56928 * 12 10 9 29 29 H 1.08997 * 113.61168 * 203.66749 * 12 10 9 30 30 H 0.96998 * 120.00149 * 23.46564 * 15 13 12 31 31 H 1.08000 * 120.83790 * 0.02562 * 19 18 16 32 32 H 1.08005 * 120.35870 * 180.02562 * 20 19 18 33 33 H 1.07999 * 119.70358 * 180.31022 * 24 23 21 34 34 H 1.08999 * 113.61947 * 156.34089 * 25 10 9 35 35 H 1.08997 * 113.61348 * 25.43304 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6567 0.0005 11 1 3.0654 -3.5639 0.4060 12 6 1.2599 -4.8288 0.5961 13 6 0.7203 -5.0791 -0.8220 14 1 0.6484 -6.1353 -1.0817 15 7 -0.5047 -4.3345 -1.1236 16 6 -1.3418 -4.7747 -2.0839 17 8 -1.0799 -5.7893 -2.7000 18 6 -2.5773 -4.0241 -2.3877 19 6 -3.4558 -4.4721 -3.3836 20 6 -4.5977 -3.7347 -3.6304 21 6 -4.8364 -2.5851 -2.8909 22 9 -5.9515 -1.8606 -3.1292 23 7 -3.9897 -2.1882 -1.9572 24 6 -2.8919 -2.8619 -1.6829 25 6 1.9990 -4.4022 -1.3432 26 1 -0.4851 0.8401 -0.0004 27 1 0.3554 -2.3880 0.0005 28 1 0.4936 -4.5189 1.3065 29 1 1.8868 -5.6366 0.9737 30 1 -0.7135 -3.5247 -0.6322 31 1 -3.2454 -5.3710 -3.9439 32 1 -5.2975 -4.0500 -4.3902 33 1 -2.2265 -2.5087 -0.9091 34 1 2.8278 -5.0935 -1.4958 35 1 1.8292 -3.7480 -2.1983 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021897724.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:56 Heat of formation + Delta-G solvation = -18.676041 kcal Electronic energy + Delta-G solvation = -21351.341823 eV Core-core repulsion = 17878.601500 eV Total energy + Delta-G solvation = -3472.740323 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.20815 -41.83092 -40.64664 -39.16508 -35.50652 -34.42191 -33.88600 -32.26792 -31.54275 -26.60743 -26.47219 -25.77586 -25.07839 -23.88383 -21.87242 -20.59401 -19.41958 -19.26329 -18.73264 -18.29844 -17.27477 -16.96405 -16.60830 -16.20330 -16.11369 -15.74874 -15.55750 -15.09256 -14.84902 -14.71807 -14.25658 -14.19665 -14.00786 -13.53028 -13.35381 -13.19519 -12.80466 -12.54034 -12.15799 -11.79752 -11.70333 -11.35854 -11.25075 -11.13315 -10.81274 -10.76854 -10.31195 -9.96117 -8.99922 -7.94912 -5.21629 -0.69073 -0.05530 1.48781 1.49825 1.57461 1.59355 2.01643 2.33452 2.54161 2.56683 3.23901 3.39015 3.50949 3.63338 3.65074 3.76949 3.88483 4.02568 4.15797 4.33759 4.38552 4.49755 4.68402 4.81143 4.85496 4.92393 5.00083 5.08739 5.26204 5.35797 5.37269 5.53550 5.69189 6.28241 6.36403 6.41287 7.02413 7.35434 8.08563 8.30913 9.27329 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.013403 B = 0.006043 C = 0.004358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.638698 B = 4632.490349 C = 6423.405659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.066 4.066 3 Si 0.965 3.035 4 H -0.294 1.294 5 H -0.298 1.298 6 H -0.270 1.270 7 C -0.243 4.243 8 H 0.076 0.924 9 N -0.716 5.716 10 C 0.143 3.857 11 H 0.071 0.929 12 C -0.145 4.145 13 C 0.121 3.879 14 H 0.105 0.895 15 N -0.696 5.696 16 C 0.569 3.431 17 O -0.564 6.564 18 C -0.207 4.207 19 C 0.016 3.984 20 C -0.178 4.178 21 C 0.312 3.688 22 F -0.111 7.111 23 N -0.543 5.543 24 C 0.178 3.822 25 C -0.177 4.177 26 H 0.251 0.749 27 H 0.372 0.628 28 H 0.066 0.934 29 H 0.130 0.870 30 H 0.403 0.597 31 H 0.181 0.819 32 H 0.197 0.803 33 H 0.164 0.836 34 H 0.110 0.890 35 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.954 -11.930 -4.554 14.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.259 4.259 3 Si 0.795 3.205 4 H -0.222 1.222 5 H -0.225 1.225 6 H -0.195 1.195 7 C -0.375 4.375 8 H 0.094 0.906 9 N -0.357 5.357 10 C 0.032 3.968 11 H 0.089 0.911 12 C -0.184 4.184 13 C 0.016 3.984 14 H 0.123 0.877 15 N -0.348 5.348 16 C 0.357 3.643 17 O -0.445 6.445 18 C -0.212 4.212 19 C -0.010 4.010 20 C -0.199 4.199 21 C 0.159 3.841 22 F -0.090 7.090 23 N -0.257 5.257 24 C 0.020 3.980 25 C -0.219 4.219 26 H 0.060 0.940 27 H 0.206 0.794 28 H 0.085 0.915 29 H 0.148 0.852 30 H 0.242 0.758 31 H 0.198 0.802 32 H 0.214 0.786 33 H 0.181 0.819 34 H 0.128 0.872 35 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.850 -11.702 -4.488 13.831 hybrid contribution -0.091 1.373 -0.190 1.389 sum -5.942 -10.328 -4.678 12.801 Atomic orbital electron populations 1.69704 1.06053 1.26033 1.59030 1.25396 0.96371 1.00483 1.03658 0.85272 0.77928 0.80288 0.77022 1.22155 1.22497 1.19492 1.19594 0.91554 0.84979 1.41369 0.90569 1.42332 1.05076 1.00589 1.87673 1.21539 0.95829 0.84960 0.94429 0.91115 1.23790 1.00237 0.99638 0.94759 1.21933 0.83076 0.95993 0.97398 0.87678 1.45914 1.22392 1.28873 1.37608 1.18013 0.82858 0.83969 0.79495 1.90718 1.76294 1.26108 1.51379 1.21041 0.98445 0.99040 1.02683 1.21885 0.89325 0.98316 0.91473 1.22127 1.00678 0.94083 1.02994 1.18802 0.83489 0.89202 0.92585 1.91633 1.47559 1.77422 1.92348 1.66962 1.05454 1.34605 1.18722 1.22769 0.90640 0.88786 0.95849 1.24218 0.98044 1.00081 0.99544 0.94042 0.79397 0.91523 0.85188 0.75839 0.80220 0.78558 0.81946 0.87207 0.94164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -54.78 13.06 21.65 0.28 -54.50 16 2 C -0.07 -3.59 5.50 84.86 0.47 -3.12 16 3 Si 0.96 44.86 29.55 68.60 2.03 46.89 16 4 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 5 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.24 -12.68 9.97 84.03 0.84 -11.84 16 8 H 0.08 3.85 7.83 -2.91 -0.02 3.83 16 9 N -0.72 -32.71 5.18 -320.44 -1.66 -34.37 16 10 C 0.14 5.03 4.56 45.52 0.21 5.24 16 11 H 0.07 2.44 8.10 -2.39 -0.02 2.43 16 12 C -0.15 -3.97 7.58 31.12 0.24 -3.74 16 13 C 0.12 3.59 4.30 45.52 0.20 3.78 16 14 H 0.11 2.94 7.50 -2.39 -0.02 2.92 16 15 N -0.70 -22.60 5.08 -443.01 -2.25 -24.85 16 16 C 0.57 18.37 7.78 86.75 0.67 19.05 16 17 O -0.56 -19.88 16.04 -3.91 -0.06 -19.95 16 18 C -0.21 -5.95 5.89 -20.00 -0.12 -6.07 16 19 C 0.02 0.35 9.71 22.71 0.22 0.57 16 20 C -0.18 -3.45 10.07 22.37 0.23 -3.22 16 21 C 0.31 8.39 8.41 84.77 0.71 9.11 16 22 F -0.11 -2.90 17.29 44.97 0.78 -2.12 16 23 N -0.54 -18.07 10.36 -195.73 -2.03 -20.09 16 24 C 0.18 5.72 10.71 85.02 0.91 6.63 16 25 C -0.18 -5.67 7.68 31.12 0.24 -5.43 16 26 H 0.25 14.25 8.31 -92.70 -0.77 13.48 16 27 H 0.37 17.46 5.35 -92.71 -0.50 16.96 16 28 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.13 2.62 8.14 -2.39 -0.02 2.60 16 30 H 0.40 13.99 4.23 -92.71 -0.39 13.60 16 31 H 0.18 3.17 7.73 -2.91 -0.02 3.15 16 32 H 0.20 2.06 8.06 -2.91 -0.02 2.04 16 33 H 0.16 5.64 6.42 -2.91 -0.02 5.62 16 34 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 35 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -64.93 306.12 2.16 -62.78 By element: Atomic # 1 Polarization: 35.00 SS G_CDS: 0.26 Total: 35.26 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: 4.81 Total: 10.96 kcal Atomic # 7 Polarization: -128.16 SS G_CDS: -5.65 Total: -133.81 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.06 Total: -19.95 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.78 Total: -2.12 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -64.93 2.16 -62.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021897724.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.101 kcal (2) G-P(sol) polarization free energy of solvation -64.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds