Wall clock time and date at job start Wed Apr 15 2020 11:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 120.00382 * 2 1 4 4 H 1.48496 * 109.46915 * 240.00208 * 3 2 1 5 5 H 1.48500 * 109.46779 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47282 * 119.99688 * 3 2 1 7 7 C 1.38819 * 119.99863 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00040 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99886 * 359.97438 * 7 2 1 10 10 C 1.47585 * 134.49032 * 180.02562 * 9 7 2 11 11 C 1.53947 * 86.11498 * 155.36001 * 10 9 7 12 12 C 1.53001 * 113.74007 * 137.95478 * 11 10 9 13 13 N 1.46498 * 109.47074 * 176.92710 * 12 11 10 14 14 C 1.34779 * 120.00048 * 180.02562 * 13 12 11 15 15 O 1.21555 * 119.99929 * 359.97438 * 14 13 12 16 16 C 1.47843 * 120.00138 * 179.97438 * 14 13 12 17 17 C 1.39557 * 120.54694 * 0.02562 * 16 14 13 18 18 N 1.31652 * 120.62321 * 179.97438 * 17 16 14 19 19 C 1.31944 * 121.90788 * 359.97438 * 18 17 16 20 20 C 1.38531 * 121.04594 * 0.02562 * 19 18 17 21 21 F 1.35092 * 120.37865 * 179.97438 * 20 19 18 22 22 C 1.38622 * 119.25123 * 0.02562 * 20 19 18 23 23 C 1.47808 * 134.45913 * 359.86869 * 9 7 2 24 24 H 0.97003 * 120.00153 * 0.02562 * 1 2 3 25 25 H 1.08995 * 113.77221 * 41.05783 * 10 9 7 26 26 H 1.09005 * 113.76804 * 269.66305 * 10 9 7 27 27 H 1.08994 * 113.74133 * 269.14678 * 11 10 9 28 28 H 1.08994 * 109.47363 * 56.92008 * 12 11 10 29 29 H 1.09006 * 109.46978 * 296.92491 * 12 11 10 30 30 H 0.97000 * 120.00170 * 359.97438 * 13 12 11 31 31 H 1.07999 * 119.68501 * 0.02562 * 17 16 14 32 32 H 1.08004 * 119.47667 * 180.02562 * 19 18 17 33 33 H 1.07999 * 120.86718 * 179.97438 * 22 20 19 34 34 H 1.09010 * 113.76614 * 90.38000 * 23 9 7 35 35 H 1.08992 * 113.84076 * 318.91908 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 1.7201 -3.8102 -0.0005 11 6 0.3469 -4.0829 0.6398 12 6 -0.3636 -5.3136 0.0728 13 7 -1.6202 -5.5278 0.7948 14 6 -2.4190 -6.5621 0.4651 15 8 -2.0969 -7.3170 -0.4316 16 6 -3.6869 -6.7786 1.1940 17 6 -4.0681 -5.9187 2.2250 18 7 -5.1970 -6.1098 2.8748 19 6 -6.0083 -7.1090 2.5843 20 6 -5.7029 -8.0070 1.5747 21 9 -6.5431 -9.0254 1.2889 22 6 -4.5247 -7.8493 0.8615 23 6 -0.1058 -2.7571 0.0024 24 1 -0.4850 0.8401 -0.0004 25 1 2.5623 -4.0325 0.6546 26 1 1.8319 -4.2351 -0.9981 27 1 0.3594 -4.0640 1.7295 28 1 0.2761 -6.1884 0.1894 29 1 -0.5746 -5.1562 -0.9850 30 1 -1.8771 -4.9257 1.5106 31 1 -3.4313 -5.0882 2.4917 32 1 -6.9252 -7.2286 3.1425 33 1 -4.2605 -8.5343 0.0694 34 1 -0.5319 -2.8718 -0.9944 35 1 -0.7184 -2.1403 0.6598 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031606803.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:59 Heat of formation + Delta-G solvation = -9.609409 kcal Electronic energy + Delta-G solvation = -20449.024282 eV Core-core repulsion = 16976.677119 eV Total energy + Delta-G solvation = -3472.347164 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.09362 -41.70545 -40.30827 -39.48000 -35.90935 -34.22801 -33.71417 -32.32331 -30.44788 -27.82942 -26.52927 -25.64774 -24.76539 -23.66163 -21.95614 -20.81228 -19.33094 -18.71184 -18.52697 -18.00399 -17.32977 -17.03353 -16.92170 -16.86328 -16.33468 -15.79401 -15.47672 -14.98003 -14.90650 -14.58522 -14.42036 -14.26092 -13.97645 -13.47507 -13.27250 -13.07724 -12.83506 -12.55821 -12.22773 -11.88242 -11.65360 -11.48292 -11.21945 -11.13616 -10.84311 -10.69057 -10.27258 -10.04711 -8.89525 -7.89195 -5.21796 -0.64631 -0.17599 1.46979 1.49702 1.55801 1.64849 1.94639 2.49012 2.56695 2.85031 3.15793 3.31915 3.41333 3.51648 3.58868 3.63177 3.78167 3.97275 4.06533 4.36862 4.40761 4.59830 4.66109 4.75989 4.80678 4.88345 4.90174 5.11455 5.27181 5.32142 5.37024 5.57002 5.67620 5.96628 6.40116 6.56187 6.94447 7.04371 7.62889 8.58393 9.27330 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.032257 B = 0.003111 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.828562 B = 8999.063729 C = 9623.085461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.066 4.066 3 Si 0.977 3.023 4 H -0.281 1.281 5 H -0.294 1.294 6 H -0.275 1.275 7 C -0.237 4.237 8 H 0.082 0.918 9 N -0.646 5.646 10 C 0.126 3.874 11 C -0.115 4.115 12 C 0.141 3.859 13 N -0.704 5.704 14 C 0.563 3.437 15 O -0.572 6.572 16 C -0.164 4.164 17 C 0.133 3.867 18 N -0.472 5.472 19 C 0.107 3.893 20 C 0.041 3.959 21 F -0.126 7.126 22 C -0.057 4.057 23 C 0.163 3.837 24 H 0.248 0.752 25 H 0.062 0.938 26 H 0.047 0.953 27 H 0.108 0.892 28 H 0.082 0.918 29 H 0.058 0.942 30 H 0.414 0.586 31 H 0.189 0.811 32 H 0.203 0.797 33 H 0.158 0.842 34 H 0.012 0.988 35 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.578 -15.873 6.522 20.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.259 4.259 3 Si 0.805 3.195 4 H -0.207 1.207 5 H -0.221 1.221 6 H -0.201 1.201 7 C -0.366 4.366 8 H 0.100 0.900 9 N -0.373 5.373 10 C 0.000 4.000 11 C -0.135 4.135 12 C 0.017 3.983 13 N -0.355 5.355 14 C 0.350 3.650 15 O -0.453 6.453 16 C -0.169 4.169 17 C -0.025 4.025 18 N -0.180 5.180 19 C -0.051 4.051 20 C 0.019 3.981 21 F -0.105 7.105 22 C -0.084 4.084 23 C 0.038 3.962 24 H 0.057 0.943 25 H 0.081 0.919 26 H 0.065 0.935 27 H 0.126 0.874 28 H 0.100 0.900 29 H 0.076 0.924 30 H 0.252 0.748 31 H 0.206 0.794 32 H 0.220 0.780 33 H 0.176 0.824 34 H 0.030 0.970 35 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.519 -15.501 6.551 19.846 hybrid contribution 0.381 0.628 -0.935 1.189 sum -10.138 -14.873 5.616 18.855 Atomic orbital electron populations 1.69971 1.06297 1.25631 1.58138 1.25587 0.96581 1.00724 1.03022 0.85183 0.77189 0.78954 0.78188 1.20712 1.22056 1.20065 1.19390 0.90858 0.83535 1.42781 0.90001 1.46394 1.03893 1.00681 1.86302 1.22701 0.95782 0.83469 0.98008 1.23419 0.96210 0.92757 1.01066 1.21290 0.83891 0.97522 0.95628 1.45841 1.21876 1.29321 1.38438 1.18131 0.83494 0.80795 0.82624 1.90778 1.74843 1.47183 1.32461 1.20771 0.96727 0.98926 1.00465 1.23449 0.92880 0.96999 0.89191 1.67892 1.04052 1.19054 1.26964 1.23653 1.00025 0.88221 0.93203 1.18653 0.90319 0.89667 0.99446 1.91555 1.69351 1.56784 1.92804 1.21868 0.91517 0.96739 0.98300 1.22304 0.86919 0.90968 0.95985 0.94287 0.91936 0.93547 0.87371 0.89960 0.92387 0.74809 0.79440 0.78007 0.82432 0.97018 0.93500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.24 11.39 21.65 0.25 -55.99 16 2 C -0.07 -3.71 5.50 84.86 0.47 -3.24 16 3 Si 0.98 45.13 29.55 68.60 2.03 47.16 16 4 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 5 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 6 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 7 C -0.24 -13.12 10.70 84.04 0.90 -12.22 16 8 H 0.08 4.33 7.83 -2.91 -0.02 4.30 16 9 N -0.65 -32.03 3.70 -716.16 -2.65 -34.68 16 10 C 0.13 4.64 8.51 86.49 0.74 5.38 16 11 C -0.11 -3.64 3.93 -10.14 -0.04 -3.68 16 12 C 0.14 3.77 5.51 86.38 0.48 4.25 16 13 N -0.70 -16.16 5.51 -465.97 -2.57 -18.73 16 14 C 0.56 14.18 7.78 86.79 0.68 14.86 16 15 O -0.57 -18.52 16.42 -3.89 -0.06 -18.58 16 16 C -0.16 -3.31 5.89 -20.00 -0.12 -3.43 16 17 C 0.13 2.29 10.71 85.04 0.91 3.20 16 18 N -0.47 -8.34 10.34 -194.60 -2.01 -10.36 16 19 C 0.11 1.54 11.16 84.75 0.95 2.49 16 20 C 0.04 0.67 7.33 22.43 0.16 0.83 16 21 F -0.13 -2.12 17.28 44.97 0.78 -1.34 16 22 C -0.06 -1.10 9.70 22.78 0.22 -0.88 16 23 C 0.16 7.24 7.08 86.43 0.61 7.85 16 24 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 25 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.05 1.65 8.10 -2.38 -0.02 1.63 16 27 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 28 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.06 1.77 7.88 -2.38 -0.02 1.75 16 30 H 0.41 7.57 6.54 -92.71 -0.61 6.96 16 31 H 0.19 2.39 6.42 -2.91 -0.02 2.37 16 32 H 0.20 1.56 8.06 -2.91 -0.02 1.54 16 33 H 0.16 3.06 7.73 -2.91 -0.02 3.04 16 34 H 0.01 0.56 7.92 -2.38 -0.02 0.54 16 35 H 0.05 2.30 7.17 -2.39 -0.02 2.29 16 Total: -1.00 -70.52 309.71 2.23 -68.30 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: 0.52 Total: 8.82 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: 5.95 Total: 15.40 kcal Atomic # 7 Polarization: -112.77 SS G_CDS: -6.99 Total: -119.75 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.06 Total: -18.58 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.78 Total: -1.34 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -70.52 2.23 -68.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031606803.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.686 kcal (2) G-P(sol) polarization free energy of solvation -70.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds