Wall clock time and date at job start Wed Apr 15 2020 11:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00370 * 2 1 4 4 H 1.48496 * 109.46905 * 270.00137 * 3 2 1 5 5 H 1.48506 * 109.46645 * 29.99611 * 3 2 1 6 6 H 1.48496 * 109.47264 * 149.99386 * 3 2 1 7 7 C 1.38820 * 119.99664 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99553 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00359 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00198 * 179.97438 * 9 7 2 11 11 H 1.08996 * 112.84800 * 23.80868 * 10 9 7 12 12 C 1.53777 * 113.61160 * 155.00125 * 10 9 7 13 13 C 1.53781 * 87.08336 * 89.20358 * 12 10 9 14 14 H 1.09002 * 113.61228 * 270.88201 * 13 12 10 15 15 N 1.46500 * 113.61711 * 140.06028 * 13 12 10 16 16 C 1.34778 * 119.99919 * 156.52821 * 15 13 12 17 17 O 1.21537 * 119.99938 * 0.02562 * 16 15 13 18 18 C 1.48000 * 120.00139 * 180.02562 * 16 15 13 19 19 N 1.32815 * 119.74950 * 0.02562 * 18 16 15 20 20 C 1.31429 * 121.66701 * 180.02562 * 19 18 16 21 21 C 1.38677 * 120.97913 * 359.97438 * 20 19 18 22 22 C 1.38450 * 119.39671 * 0.02562 * 21 20 19 23 23 C 1.38965 * 118.46746 * 359.73246 * 22 21 20 24 24 F 1.35093 * 120.50774 * 180.26249 * 23 22 21 25 25 C 1.53775 * 113.69461 * 252.53569 * 10 9 7 26 26 H 0.97001 * 120.00195 * 359.97438 * 1 2 3 27 27 H 0.97006 * 119.99938 * 359.97438 * 9 7 2 28 28 H 1.08997 * 113.61941 * 334.65065 * 12 10 9 29 29 H 1.09009 * 113.68972 * 203.76145 * 12 10 9 30 30 H 0.96998 * 119.99853 * 336.53388 * 15 13 12 31 31 H 1.08001 * 119.50676 * 180.02562 * 20 19 18 32 32 H 1.08001 * 120.30179 * 180.02562 * 21 20 19 33 33 H 1.08001 * 120.76630 * 180.02562 * 22 21 20 34 34 H 1.08993 * 113.61636 * 156.31970 * 25 10 9 35 35 H 1.09008 * 113.61006 * 25.42212 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6569 0.0005 11 1 3.0655 -3.5639 0.4060 12 6 1.2600 -4.8288 0.5960 13 6 0.7221 -5.0805 -0.8225 14 1 -0.1887 -4.5261 -1.0489 15 7 0.6249 -6.5004 -1.1699 16 6 -0.2314 -6.9022 -2.1300 17 8 -0.9226 -6.0865 -2.7079 18 6 -0.3300 -8.3367 -2.4806 19 7 0.4273 -9.2239 -1.8456 20 6 0.3707 -10.5065 -2.1270 21 6 -0.4886 -10.9856 -3.1043 22 6 -1.2974 -10.0976 -3.7929 23 6 -1.2217 -8.7475 -3.4724 24 9 -1.9960 -7.8458 -4.1146 25 6 2.0010 -4.4033 -1.3427 26 1 -0.4850 0.8400 0.0004 27 1 0.3555 -2.3881 0.0005 28 1 0.4927 -4.5189 1.3054 29 1 1.8857 -5.6367 0.9755 30 1 1.1768 -7.1514 -0.7089 31 1 1.0021 -11.1976 -1.5884 32 1 -0.5265 -12.0419 -3.3264 33 1 -1.9750 -10.4466 -4.5580 34 1 2.8304 -5.0941 -1.4939 35 1 1.8318 -3.7497 -2.1985 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020818709.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:36 Heat of formation + Delta-G solvation = -31.313723 kcal Electronic energy + Delta-G solvation = -20741.846308 eV Core-core repulsion = 17268.557974 eV Total energy + Delta-G solvation = -3473.288334 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.08831 -41.63166 -40.56911 -39.26264 -35.79199 -34.50867 -33.46371 -32.19770 -31.52751 -26.85124 -26.54846 -25.77675 -24.69759 -24.00373 -22.02000 -20.47412 -19.39659 -19.08976 -18.69626 -18.17694 -17.26628 -17.13368 -16.65672 -16.55403 -16.02414 -15.70939 -15.47325 -15.03131 -14.88944 -14.50532 -14.29943 -14.19338 -13.65844 -13.49393 -13.36084 -13.31841 -12.80944 -12.63784 -12.17480 -11.84916 -11.77297 -11.47380 -11.32750 -11.02500 -10.90991 -10.69087 -10.25621 -9.96482 -9.04927 -7.96186 -5.26470 -0.61154 -0.02819 1.46746 1.49533 1.57848 1.58482 1.95139 2.54991 2.63076 2.89246 3.05677 3.35360 3.59220 3.60915 3.65885 3.80577 3.86699 3.88658 4.26909 4.28170 4.37367 4.57087 4.75281 4.79923 4.81671 4.92023 4.96863 5.11993 5.20328 5.26182 5.48864 5.49670 5.62213 6.25596 6.33801 6.64424 7.09214 7.30381 8.05962 8.27851 9.27471 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.038358 B = 0.003262 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.791483 B = 8580.697901 C = 9072.418429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.080 4.080 3 Si 0.978 3.022 4 H -0.290 1.290 5 H -0.296 1.296 6 H -0.263 1.263 7 C -0.244 4.244 8 H 0.084 0.916 9 N -0.724 5.724 10 C 0.154 3.846 11 H 0.083 0.917 12 C -0.136 4.136 13 C 0.126 3.874 14 H 0.072 0.928 15 N -0.678 5.678 16 C 0.553 3.447 17 O -0.574 6.574 18 C 0.020 3.980 19 N -0.446 5.446 20 C 0.090 3.910 21 C -0.092 4.092 22 C -0.114 4.114 23 C 0.078 3.922 24 F -0.131 7.131 25 C -0.170 4.170 26 H 0.251 0.749 27 H 0.371 0.629 28 H 0.064 0.936 29 H 0.126 0.874 30 H 0.422 0.578 31 H 0.214 0.786 32 H 0.203 0.797 33 H 0.183 0.817 34 H 0.105 0.895 35 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.431 -30.067 -4.091 30.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.807 3.193 4 H -0.217 1.217 5 H -0.223 1.223 6 H -0.188 1.188 7 C -0.376 4.376 8 H 0.102 0.898 9 N -0.361 5.361 10 C 0.043 3.957 11 H 0.101 0.899 12 C -0.175 4.175 13 C 0.021 3.979 14 H 0.090 0.910 15 N -0.329 5.329 16 C 0.339 3.661 17 O -0.453 6.453 18 C -0.117 4.117 19 N -0.157 5.157 20 C -0.071 4.071 21 C -0.111 4.111 22 C -0.140 4.140 23 C 0.055 3.945 24 F -0.110 7.110 25 C -0.212 4.212 26 H 0.060 0.940 27 H 0.203 0.797 28 H 0.083 0.917 29 H 0.144 0.856 30 H 0.261 0.739 31 H 0.230 0.770 32 H 0.220 0.780 33 H 0.200 0.800 34 H 0.123 0.877 35 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 2.637 -28.935 -3.827 29.306 hybrid contribution -0.969 1.176 -0.862 1.751 sum 1.668 -27.759 -4.689 28.202 Atomic orbital electron populations 1.69846 1.06876 1.26157 1.59424 1.25674 0.96395 1.01489 1.03617 0.85072 0.77848 0.79120 0.77308 1.21714 1.22277 1.18754 1.19737 0.91751 0.84950 1.41136 0.89842 1.42414 1.05344 1.00921 1.87420 1.21215 0.95921 0.84471 0.94078 0.89917 1.23737 1.00188 0.99260 0.94311 1.22364 0.97943 0.80236 0.97362 0.91008 1.45707 1.40697 1.09158 1.37338 1.18371 0.80146 0.87265 0.80350 1.90853 1.45751 1.54893 1.53827 1.21027 0.98611 0.94000 0.98058 1.67607 1.19403 1.04573 1.24128 1.23790 0.97246 0.90449 0.95623 1.22919 0.92004 1.03370 0.92850 1.22165 1.01293 0.88749 1.01749 1.19209 0.92255 0.89219 0.93828 1.91569 1.72372 1.67556 1.79491 1.24193 0.97635 0.99487 0.99923 0.94035 0.79696 0.91735 0.85569 0.73938 0.76967 0.77998 0.79994 0.87697 0.94564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.11 13.06 21.65 0.28 -61.83 16 2 C -0.08 -4.73 5.50 84.86 0.47 -4.26 16 3 Si 0.98 47.33 29.55 68.60 2.03 49.35 16 4 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 5 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 6 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.24 -13.89 9.97 84.04 0.84 -13.05 16 8 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 9 N -0.72 -37.96 5.31 -320.46 -1.70 -39.66 16 10 C 0.15 6.10 4.56 45.51 0.21 6.31 16 11 H 0.08 3.06 8.10 -2.39 -0.02 3.04 16 12 C -0.14 -4.30 7.57 31.12 0.24 -4.06 16 13 C 0.13 4.52 4.10 45.52 0.19 4.71 16 14 H 0.07 3.24 7.50 -2.39 -0.02 3.22 16 15 N -0.68 -20.48 5.35 -442.76 -2.37 -22.85 16 16 C 0.55 19.24 7.81 86.83 0.68 19.92 16 17 O -0.57 -25.71 14.94 -3.83 -0.06 -25.77 16 18 C 0.02 0.52 6.75 41.90 0.28 0.81 16 19 N -0.45 -8.36 9.54 -184.79 -1.76 -10.12 16 20 C 0.09 0.79 11.18 84.86 0.95 1.74 16 21 C -0.09 -0.48 10.11 22.43 0.23 -0.26 16 22 C -0.11 -1.36 10.16 22.49 0.23 -1.13 16 23 C 0.08 1.88 7.32 22.76 0.17 2.04 16 24 F -0.13 -4.14 15.55 44.97 0.70 -3.45 16 25 C -0.17 -6.27 7.68 31.12 0.24 -6.04 16 26 H 0.25 15.53 8.31 -92.71 -0.77 14.75 16 27 H 0.37 21.34 7.90 -92.70 -0.73 20.61 16 28 H 0.06 2.21 8.14 -2.39 -0.02 2.20 16 29 H 0.13 2.88 8.11 -2.38 -0.02 2.86 16 30 H 0.42 9.84 8.04 -92.71 -0.75 9.10 16 31 H 0.21 0.01 8.06 -2.91 -0.02 -0.02 16 32 H 0.20 -0.93 8.06 -2.91 -0.02 -0.95 16 33 H 0.18 1.08 8.06 -2.91 -0.02 1.06 16 34 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 35 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 Total: -1.00 -82.14 311.71 1.48 -80.65 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: -0.34 Total: 26.95 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: 4.70 Total: 6.72 kcal Atomic # 7 Polarization: -128.91 SS G_CDS: -5.55 Total: -134.46 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -0.06 Total: -25.77 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.70 Total: -3.45 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.35 kcal Total: -82.14 1.48 -80.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020818709.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.338 kcal (2) G-P(sol) polarization free energy of solvation -82.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds