Wall clock time and date at job start Wed Apr 15 2020 11:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86789 * 119.99923 * 2 1 4 4 H 1.48499 * 109.47362 * 240.00179 * 3 2 1 5 5 H 1.48502 * 109.47587 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47378 * 120.00009 * 3 2 1 7 7 C 1.38812 * 119.99557 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99673 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00411 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99911 * 179.97438 * 9 7 2 11 11 H 1.08994 * 112.85233 * 314.83879 * 10 9 7 12 12 C 1.53788 * 113.60866 * 86.03344 * 10 9 7 13 13 C 1.53774 * 87.08405 * 89.19594 * 12 10 9 14 14 H 1.09000 * 113.61165 * 140.06191 * 13 12 10 15 15 N 1.46495 * 113.61587 * 270.88416 * 13 12 10 16 16 C 1.34778 * 119.99977 * 201.67565 * 15 13 12 17 17 O 1.21535 * 119.99873 * 0.02562 * 16 15 13 18 18 C 1.47995 * 120.00247 * 179.97438 * 16 15 13 19 19 N 1.32809 * 119.75194 * 0.02562 * 18 16 15 20 20 C 1.31425 * 121.67092 * 179.97438 * 19 18 16 21 21 C 1.38683 * 120.97841 * 0.27628 * 20 19 18 22 22 C 1.38447 * 119.39546 * 359.44907 * 21 20 19 23 23 C 1.38970 * 118.46644 * 0.53886 * 22 21 20 24 24 F 1.35100 * 120.50595 * 179.75244 * 23 22 21 25 25 C 1.53783 * 113.68894 * 183.56012 * 10 9 7 26 26 H 0.96998 * 120.00493 * 359.97438 * 1 2 3 27 27 H 0.96997 * 120.00226 * 0.02562 * 9 7 2 28 28 H 1.09004 * 113.61179 * 334.64452 * 12 10 9 29 29 H 1.08998 * 113.68777 * 203.76107 * 12 10 9 30 30 H 0.96993 * 120.00117 * 21.67287 * 15 13 12 31 31 H 1.08001 * 119.51628 * 179.97438 * 20 19 18 32 32 H 1.08003 * 120.30552 * 179.70872 * 21 20 19 33 33 H 1.08001 * 120.76925 * 180.26730 * 22 21 20 34 34 H 1.08999 * 113.60939 * 156.32767 * 25 10 9 35 35 H 1.08999 * 113.61481 * 25.43318 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6176 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 1 2.8825 -3.6690 -0.7145 12 6 2.4515 -4.1421 1.4036 13 6 1.0956 -4.8660 1.4476 14 1 1.1427 -5.8539 1.9060 15 7 0.0077 -4.0426 1.9813 16 6 -1.0961 -4.6289 2.4856 17 8 -1.1888 -5.8406 2.4981 18 6 -2.1949 -3.7971 3.0252 19 7 -2.0882 -2.4734 3.0096 20 6 -3.0408 -1.6988 3.4783 21 6 -4.1997 -2.2383 4.0161 22 6 -4.3579 -3.6133 4.0482 23 6 -3.3355 -4.4096 3.5461 24 9 -3.4444 -5.7561 3.5616 25 6 1.1497 -4.8946 -0.0890 26 1 -0.4851 0.8400 0.0004 27 1 0.3555 -2.3881 -0.0005 28 1 2.5411 -3.3380 2.1340 29 1 3.3073 -4.8171 1.4101 30 1 0.0819 -3.0756 1.9717 31 1 -2.9174 -0.6263 3.4487 32 1 -4.9737 -1.5916 4.4025 33 1 -5.2532 -4.0571 4.4580 34 1 1.6496 -5.7754 -0.4920 35 1 0.1883 -4.6981 -0.5635 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022888157.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:39 Heat of formation + Delta-G solvation = -22.894966 kcal Electronic energy + Delta-G solvation = -21656.790130 eV Core-core repulsion = 18183.866861 eV Total energy + Delta-G solvation = -3472.923269 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.06001 -41.64287 -40.62867 -39.17450 -35.44826 -34.39296 -33.34880 -32.14485 -31.60489 -26.86170 -26.46181 -25.87160 -24.66891 -23.87718 -21.89272 -20.33776 -19.35215 -18.94710 -18.65462 -18.12365 -17.17812 -17.02687 -16.63515 -16.39403 -16.08940 -15.63132 -15.52399 -15.00735 -14.97312 -14.75052 -14.34306 -14.13496 -13.48050 -13.38004 -13.32875 -13.08119 -12.73233 -12.55434 -12.15318 -11.91280 -11.70732 -11.40807 -11.09119 -11.01607 -10.80521 -10.58905 -10.22568 -9.92438 -8.94475 -7.85630 -5.15936 -0.58179 0.00879 1.52122 1.53744 1.58772 1.59430 2.02225 2.60501 2.66315 2.89829 3.10737 3.43930 3.60828 3.64861 3.69723 3.84127 3.87792 3.98329 4.19846 4.33629 4.40898 4.58350 4.77862 4.82594 4.87516 4.90907 4.95491 5.05541 5.22532 5.36832 5.50820 5.55547 5.68678 6.34400 6.40859 6.72100 7.07159 7.40322 8.12772 8.37819 9.35635 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016071 B = 0.006169 C = 0.004631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.830397 B = 4537.630652 C = 6044.152428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.064 4.064 3 Si 0.969 3.031 4 H -0.284 1.284 5 H -0.296 1.296 6 H -0.281 1.281 7 C -0.247 4.247 8 H 0.075 0.925 9 N -0.720 5.720 10 C 0.145 3.855 11 H 0.060 0.940 12 C -0.160 4.160 13 C 0.117 3.883 14 H 0.098 0.902 15 N -0.681 5.681 16 C 0.559 3.441 17 O -0.565 6.565 18 C 0.013 3.987 19 N -0.451 5.451 20 C 0.081 3.919 21 C -0.091 4.091 22 C -0.109 4.109 23 C 0.088 3.912 24 F -0.123 7.123 25 C -0.149 4.149 26 H 0.250 0.750 27 H 0.373 0.627 28 H 0.054 0.946 29 H 0.119 0.881 30 H 0.417 0.583 31 H 0.188 0.812 32 H 0.203 0.797 33 H 0.193 0.807 34 H 0.124 0.876 35 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.752 -5.592 9.080 13.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.257 4.257 3 Si 0.798 3.202 4 H -0.210 1.210 5 H -0.222 1.222 6 H -0.208 1.208 7 C -0.378 4.378 8 H 0.092 0.908 9 N -0.360 5.360 10 C 0.035 3.965 11 H 0.077 0.923 12 C -0.201 4.201 13 C 0.012 3.988 14 H 0.116 0.884 15 N -0.332 5.332 16 C 0.344 3.656 17 O -0.445 6.445 18 C -0.125 4.125 19 N -0.161 5.161 20 C -0.080 4.080 21 C -0.110 4.110 22 C -0.135 4.135 23 C 0.064 3.936 24 F -0.101 7.101 25 C -0.188 4.188 26 H 0.059 0.941 27 H 0.207 0.793 28 H 0.073 0.927 29 H 0.137 0.863 30 H 0.257 0.743 31 H 0.204 0.796 32 H 0.220 0.780 33 H 0.211 0.789 34 H 0.143 0.857 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.863 -6.017 8.696 12.606 hybrid contribution -0.540 0.826 0.085 0.991 sum -7.403 -5.191 8.781 12.604 Atomic orbital electron populations 1.69814 1.06123 1.25885 1.58481 1.25448 0.96330 1.00494 1.03427 0.85301 0.77219 0.79828 0.77805 1.21002 1.22225 1.20761 1.19475 0.91396 0.84884 1.42083 0.90755 1.42350 1.05185 1.00435 1.88053 1.21478 0.94536 0.85226 0.95239 0.92256 1.23965 0.95797 1.00010 1.00280 1.21945 0.87204 0.94885 0.94775 0.88401 1.45863 1.16590 1.11960 1.58744 1.18171 0.82582 0.86810 0.78006 1.90745 1.80602 1.14022 1.59163 1.21252 0.95340 0.91532 1.04376 1.67706 1.32280 1.02934 1.13220 1.23538 0.89406 1.01520 0.93533 1.22849 0.98563 0.94630 0.94984 1.22148 0.98607 0.94160 0.98586 1.19021 0.95919 0.78407 1.00214 1.91558 1.95920 1.28829 1.93826 1.23712 0.99979 0.99531 0.95575 0.94062 0.79346 0.92689 0.86256 0.74332 0.79554 0.77985 0.78947 0.85749 0.93414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.56 13.06 21.65 0.28 -55.28 16 2 C -0.06 -3.51 5.50 84.86 0.47 -3.04 16 3 Si 0.97 44.87 29.55 68.60 2.03 46.90 16 4 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 5 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 7 C -0.25 -13.27 9.99 84.03 0.84 -12.43 16 8 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 9 N -0.72 -35.46 4.41 -320.43 -1.41 -36.88 16 10 C 0.14 5.66 4.53 45.52 0.21 5.87 16 11 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 12 C -0.16 -5.43 7.61 31.12 0.24 -5.19 16 13 C 0.12 4.17 4.28 45.52 0.19 4.36 16 14 H 0.10 3.34 7.54 -2.39 -0.02 3.32 16 15 N -0.68 -27.45 4.94 -442.78 -2.19 -29.64 16 16 C 0.56 22.80 7.81 86.83 0.68 23.48 16 17 O -0.57 -24.81 14.96 -3.82 -0.06 -24.87 16 18 C 0.01 0.45 6.75 41.90 0.28 0.74 16 19 N -0.45 -15.72 9.54 -184.79 -1.76 -17.48 16 20 C 0.08 1.99 11.18 84.86 0.95 2.94 16 21 C -0.09 -1.42 10.11 22.43 0.23 -1.19 16 22 C -0.11 -2.02 10.16 22.50 0.23 -1.79 16 23 C 0.09 2.60 7.32 22.76 0.17 2.76 16 24 F -0.12 -4.06 15.55 44.97 0.70 -3.36 16 25 C -0.15 -5.12 7.58 31.12 0.24 -4.89 16 26 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 27 H 0.37 20.04 6.99 -92.71 -0.65 19.39 16 28 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 29 H 0.12 3.16 8.14 -2.39 -0.02 3.14 16 30 H 0.42 18.55 6.51 -92.71 -0.60 17.95 16 31 H 0.19 3.80 8.06 -2.91 -0.02 3.78 16 32 H 0.20 1.04 8.06 -2.91 -0.02 1.02 16 33 H 0.19 1.93 8.06 -2.91 -0.02 1.91 16 34 H 0.12 3.35 8.14 -2.39 -0.02 3.33 16 35 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -71.08 308.20 2.19 -68.89 By element: Atomic # 1 Polarization: 40.21 SS G_CDS: -0.11 Total: 40.10 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: 4.71 Total: 11.61 kcal Atomic # 7 Polarization: -134.19 SS G_CDS: -5.08 Total: -139.27 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.06 Total: -24.87 kcal Atomic # 9 Polarization: -4.06 SS G_CDS: 0.70 Total: -3.36 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -71.08 2.19 -68.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022888157.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.000 kcal (2) G-P(sol) polarization free energy of solvation -71.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds