Wall clock time and date at job start Wed Apr 15 2020 11:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30723 * 1 3 3 Si 1.86798 * 120.00560 * 2 1 4 4 H 1.48499 * 109.47528 * 240.00496 * 3 2 1 5 5 H 1.48505 * 109.46962 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47185 * 119.99944 * 3 2 1 7 7 C 1.40063 * 119.99889 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00214 * 186.36394 * 7 2 1 9 9 C 1.41269 * 119.99960 * 6.36951 * 7 2 1 10 10 C 1.40722 * 120.16181 * 173.88901 * 9 7 2 11 11 N 1.31898 * 119.93489 * 179.97438 * 10 9 7 12 12 C 1.32159 * 120.27028 * 359.97438 * 11 10 9 13 13 C 1.39921 * 120.31910 * 0.02562 * 12 11 10 14 14 N 1.38826 * 119.96595 * 179.97438 * 13 12 11 15 15 C 1.45883 * 111.00354 * 104.41983 * 14 13 12 16 16 C 1.51422 * 108.98576 * 218.28790 * 15 14 13 17 17 C 1.53919 * 109.09590 * 265.82999 * 16 15 14 18 18 C 1.51804 * 110.75939 * 39.60120 * 17 16 15 19 19 O 1.20756 * 118.79872 * 221.38046 * 18 17 16 20 20 C 1.49267 * 122.39540 * 41.36098 * 18 17 16 21 21 H 1.09004 * 109.43604 * 31.62433 * 20 18 17 22 22 F 1.39898 * 109.43408 * 151.50008 * 20 18 17 23 23 C 1.41618 * 110.99765 * 236.04439 * 14 13 12 24 24 N 1.32258 * 120.06789 * 0.25015 * 13 12 11 25 25 H 0.97002 * 119.99504 * 359.97438 * 1 2 3 26 26 H 1.08002 * 120.03091 * 0.02562 * 10 9 7 27 27 H 1.08001 * 119.84094 * 179.97438 * 12 11 10 28 28 H 1.08992 * 109.55244 * 338.13658 * 15 14 13 29 29 H 1.09001 * 109.55387 * 98.34055 * 15 14 13 30 30 H 1.09003 * 109.53196 * 25.71004 * 16 15 14 31 31 H 1.08995 * 109.53099 * 145.94141 * 16 15 14 32 32 H 1.08992 * 109.21738 * 159.93708 * 17 16 15 33 33 H 1.09002 * 109.21651 * 279.31917 * 17 16 15 34 34 H 1.08993 * 109.43784 * 47.28409 * 23 14 13 35 35 H 1.08998 * 109.43698 * 287.39851 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2414 1.6176 0.0000 4 1 3.0951 1.6964 -1.2125 5 1 1.2764 2.7464 0.0006 6 1 3.0952 1.6962 1.2125 7 6 2.0075 -1.2130 -0.0005 8 1 3.0825 -1.2160 0.1031 9 6 1.3077 -2.4326 -0.1368 10 6 2.0143 -3.6425 -0.2669 11 7 1.3564 -4.7787 -0.3934 12 6 0.0348 -4.7862 -0.3980 13 6 -0.6788 -3.5896 -0.2694 14 7 -2.0670 -3.6060 -0.2757 15 6 -2.5982 -3.4185 1.0700 16 6 -3.8145 -4.3030 1.2471 17 6 -5.0801 -3.4902 0.9202 18 6 -4.8445 -2.5855 -0.2758 19 8 -5.2826 -1.4605 -0.2494 20 6 -4.0909 -3.0358 -1.4830 21 1 -4.2475 -4.1043 -1.6307 22 9 -4.5508 -2.3390 -2.6055 23 6 -2.5799 -2.7586 -1.2879 24 7 -0.0323 -2.4423 -0.1473 25 1 -0.4849 0.8401 0.0004 26 1 3.0943 -3.6409 -0.2624 27 1 -0.4969 -5.7205 -0.5024 28 1 -1.8392 -3.6911 1.8031 29 1 -2.8811 -2.3750 1.2084 30 1 -3.7455 -5.1568 0.5730 31 1 -3.8628 -4.6540 2.2778 32 1 -5.8983 -4.1747 0.6969 33 1 -5.3478 -2.8806 1.7833 34 1 -2.0524 -2.9494 -2.2224 35 1 -2.4365 -1.7180 -0.9969 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164136407.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:47 Heat of formation + Delta-G solvation = -47.189862 kcal Electronic energy + Delta-G solvation = -22197.799323 eV Core-core repulsion = 18723.822548 eV Total energy + Delta-G solvation = -3473.976775 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.112 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.98053 -41.62688 -40.61700 -38.76365 -35.96570 -34.86974 -33.45036 -32.35979 -30.86761 -28.08222 -27.11581 -25.76059 -24.34629 -23.43706 -21.79753 -20.43639 -19.65337 -18.52120 -17.96247 -17.49553 -17.32875 -17.02615 -16.68422 -16.57139 -16.22168 -15.68716 -15.37774 -14.89135 -14.74382 -14.50249 -14.32603 -13.84539 -13.59543 -13.39561 -13.34851 -13.03391 -12.74168 -12.46530 -12.34724 -12.14644 -11.92731 -11.78096 -11.69554 -11.51786 -10.94994 -10.64512 -9.97379 -9.68396 -9.26769 -8.42464 -6.69925 0.50974 0.65447 1.03627 1.35522 1.47739 1.49912 2.12576 2.43168 2.70016 2.71580 3.35044 3.64560 3.69077 3.79900 3.81967 4.04798 4.09171 4.11873 4.21886 4.31350 4.48535 4.56668 4.57492 4.73595 4.77930 4.93031 4.94533 5.04179 5.10279 5.25410 5.38752 5.62554 5.92458 6.06424 6.16161 6.23954 6.50896 6.74416 7.28091 7.82809 8.21759 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016759 B = 0.006589 C = 0.005413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.322048 B = 4248.434393 C = 5171.830983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.748 5.748 2 C 0.025 3.975 3 Si 0.988 3.012 4 H -0.256 1.256 5 H -0.276 1.276 6 H -0.252 1.252 7 C -0.439 4.439 8 H 0.104 0.896 9 C 0.188 3.812 10 C -0.082 4.082 11 N -0.433 5.433 12 C -0.085 4.085 13 C 0.264 3.736 14 N -0.480 5.480 15 C 0.069 3.931 16 C -0.100 4.100 17 C -0.149 4.149 18 C 0.337 3.663 19 O -0.489 6.489 20 C 0.051 3.949 21 H 0.162 0.838 22 F -0.208 7.208 23 C 0.083 3.917 24 N -0.505 5.505 25 H 0.279 0.721 26 H 0.150 0.850 27 H 0.164 0.836 28 H 0.062 0.938 29 H 0.020 0.980 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.146 0.854 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.304 -6.215 2.065 10.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.369 5.369 2 C -0.198 4.198 3 Si 0.808 3.192 4 H -0.180 1.180 5 H -0.200 1.200 6 H -0.176 1.176 7 C -0.471 4.471 8 H 0.122 0.878 9 C 0.060 3.940 10 C -0.250 4.250 11 N -0.145 5.145 12 C -0.245 4.245 13 C 0.025 3.975 14 N -0.203 5.203 15 C -0.057 4.057 16 C -0.138 4.138 17 C -0.186 4.186 18 C 0.214 3.786 19 O -0.364 6.364 20 C 0.014 3.986 21 H 0.180 0.820 22 F -0.189 7.189 23 C -0.046 4.046 24 N -0.226 5.226 25 H 0.089 0.911 26 H 0.167 0.833 27 H 0.181 0.819 28 H 0.081 0.919 29 H 0.038 0.962 30 H 0.127 0.873 31 H 0.128 0.872 32 H 0.163 0.837 33 H 0.113 0.887 34 H 0.097 0.903 35 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -8.915 -5.872 1.939 10.850 hybrid contribution 0.767 1.949 -0.089 2.096 sum -8.148 -3.923 1.850 9.231 Atomic orbital electron populations 1.70159 1.09100 1.29479 1.28200 1.27057 0.95635 1.04848 0.92278 0.85149 0.78567 0.74921 0.80564 1.17969 1.20030 1.17566 1.20034 0.95889 0.89824 1.41355 0.87811 1.19658 0.88754 0.94553 0.91002 1.23352 1.00178 0.89031 1.12441 1.67777 1.09319 1.29661 1.07737 1.22786 0.89612 0.97781 1.14353 1.20926 0.90065 0.91192 0.95319 1.56467 1.02180 1.54528 1.07152 1.21763 0.98489 0.98244 0.87246 1.21600 0.88960 0.97981 1.05262 1.22571 1.01819 0.99498 0.94724 1.25908 0.74343 0.88249 0.90100 1.90427 1.41981 1.22372 1.81597 1.22369 0.93467 1.00154 0.82619 0.82031 1.92816 1.89835 1.82565 1.53684 1.21364 0.92126 0.95095 0.96061 1.69456 1.09266 1.26502 1.17362 0.91099 0.83285 0.81895 0.91925 0.96162 0.87281 0.87182 0.83677 0.88720 0.90339 0.96274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -39.29 11.51 21.84 0.25 -39.04 16 2 C 0.02 1.21 5.49 85.30 0.47 1.68 16 3 Si 0.99 36.74 29.56 68.60 2.03 38.76 16 4 H -0.26 -9.18 7.11 99.48 0.71 -8.47 16 5 H -0.28 -10.10 7.11 99.48 0.71 -9.40 16 6 H -0.25 -8.87 7.11 99.48 0.71 -8.16 16 7 C -0.44 -22.35 9.15 23.46 0.21 -22.14 16 8 H 0.10 4.79 7.86 -2.91 -0.02 4.77 16 9 C 0.19 9.91 6.54 40.16 0.26 10.17 16 10 C -0.08 -3.97 10.97 85.29 0.94 -3.03 16 11 N -0.43 -20.17 10.47 -192.23 -2.01 -22.18 16 12 C -0.08 -3.64 11.17 85.05 0.95 -2.69 16 13 C 0.26 11.78 4.85 133.36 0.65 12.43 16 14 N -0.48 -17.17 3.73 -715.93 -2.67 -19.84 16 15 C 0.07 2.18 5.27 85.98 0.45 2.63 16 16 C -0.10 -1.86 5.88 30.39 0.18 -1.68 16 17 C -0.15 -2.71 6.06 30.51 0.18 -2.52 16 18 C 0.34 9.77 5.08 29.01 0.15 9.92 16 19 O -0.49 -18.61 17.40 -1.44 -0.03 -18.63 16 20 C 0.05 1.49 3.74 30.04 0.11 1.60 16 21 H 0.16 3.23 8.14 -2.39 -0.02 3.21 16 22 F -0.21 -7.17 16.78 44.97 0.75 -6.41 16 23 C 0.08 3.14 4.70 87.90 0.41 3.55 16 24 N -0.50 -26.37 7.62 -186.00 -1.42 -27.79 16 25 H 0.28 13.69 8.29 -92.71 -0.77 12.92 16 26 H 0.15 6.53 8.06 -2.91 -0.02 6.50 16 27 H 0.16 5.88 8.06 -2.91 -0.02 5.86 16 28 H 0.06 2.17 7.65 -2.39 -0.02 2.15 16 29 H 0.02 0.75 6.92 -2.39 -0.02 0.74 16 30 H 0.11 1.67 7.96 -2.39 -0.02 1.65 16 31 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.15 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.09 1.75 8.13 -2.39 -0.02 1.73 16 34 H 0.08 3.12 7.96 -2.39 -0.02 3.10 16 35 H 0.02 0.90 8.03 -2.39 -0.02 0.88 16 Total: -1.00 -67.78 300.63 2.99 -64.80 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 1.11 Total: 20.41 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: 4.97 Total: 9.93 kcal Atomic # 7 Polarization: -103.00 SS G_CDS: -5.85 Total: -108.85 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -0.03 Total: -18.63 kcal Atomic # 9 Polarization: -7.17 SS G_CDS: 0.75 Total: -6.41 kcal Atomic # 14 Polarization: 36.74 SS G_CDS: 2.03 Total: 38.76 kcal Total: -67.78 2.99 -64.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164136407.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.607 kcal (2) G-P(sol) polarization free energy of solvation -67.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds