Wall clock time and date at job start Wed Apr 15 2020 11:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00164 * 2 1 4 4 H 1.48496 * 109.47479 * 270.00451 * 3 2 1 5 5 H 1.48504 * 109.47028 * 30.00495 * 3 2 1 6 6 H 1.48500 * 109.47271 * 149.99898 * 3 2 1 7 7 C 1.37878 * 119.99875 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00537 * 0.02562 * 7 2 1 9 9 C 1.50710 * 119.99775 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46771 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.46892 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47336 * 300.00476 * 11 10 9 13 13 N 1.46506 * 109.46834 * 299.99717 * 12 11 10 14 14 C 1.30421 * 119.99831 * 241.11511 * 13 12 11 15 15 N 1.37956 * 119.99581 * 186.07039 * 14 13 12 16 16 C 1.47559 * 120.00073 * 6.07353 * 14 13 12 17 17 N 1.30450 * 125.54710 * 220.92559 * 16 14 13 18 18 C 1.30994 * 115.85347 * 179.97438 * 17 16 14 19 19 C 1.33918 * 115.79491 * 0.02562 * 18 17 16 20 20 S 1.71063 * 109.13206 * 359.74612 * 19 18 17 21 21 C 1.52996 * 109.47044 * 59.99713 * 12 11 10 22 22 C 1.52995 * 109.46955 * 299.99963 * 9 7 2 23 23 H 0.96994 * 120.00021 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47194 * 60.00358 * 9 7 2 25 25 H 1.09002 * 109.47266 * 60.00467 * 10 9 7 26 26 H 1.08996 * 109.47448 * 299.99919 * 10 9 7 27 27 H 1.08995 * 109.47021 * 179.97438 * 11 10 9 28 28 H 1.09002 * 109.46632 * 60.00264 * 11 10 9 29 29 H 1.08993 * 109.47240 * 179.97438 * 12 11 10 30 30 H 0.96994 * 120.00155 * 359.97438 * 15 14 13 31 31 H 0.97004 * 119.99325 * 180.02562 * 15 14 13 32 32 H 1.07996 * 122.10467 * 180.02562 * 18 17 16 33 33 H 1.08002 * 125.43296 * 180.02562 * 19 18 17 34 34 H 1.08996 * 109.47602 * 60.00262 * 21 12 11 35 35 H 1.09005 * 109.46937 * 180.02562 * 21 12 11 36 36 H 1.09002 * 109.47385 * 299.99718 * 22 9 7 37 37 H 1.08995 * 109.47458 * 60.00168 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5516 -2.6366 -0.0022 12 6 6.0606 -1.9157 -1.2521 13 7 5.5714 -2.6068 -2.4477 14 6 6.4181 -3.1217 -3.2956 15 7 5.9646 -3.6613 -4.4815 16 6 7.8609 -3.1271 -2.9864 17 7 8.8192 -2.8742 -3.8345 18 6 10.0367 -2.9316 -3.3546 19 6 10.1371 -3.2430 -2.0560 20 16 8.5690 -3.4694 -1.4109 21 6 5.5506 -0.4733 -1.2521 22 6 4.0210 -0.4725 -1.2504 23 1 -0.4850 0.8400 0.0004 24 1 3.8753 -0.6805 0.8889 25 1 3.6579 -3.1506 -0.8908 26 1 3.6586 -3.1502 0.8892 27 1 5.9149 -3.6642 -0.0017 28 1 5.9156 -2.1224 0.8873 29 1 7.1506 -1.9153 -1.2527 30 1 5.0162 -3.6581 -4.6845 31 1 6.5944 -4.0446 -5.1119 32 1 10.9049 -2.7399 -3.9675 33 1 11.0605 -3.3321 -1.5030 34 1 5.9146 0.0409 -0.3626 35 1 5.9129 0.0402 -2.1428 36 1 3.6574 -0.9862 -2.1404 37 1 3.6578 0.5551 -1.2500 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173329436.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:53 Heat of formation + Delta-G solvation = 41.531726 kcal Electronic energy + Delta-G solvation = -19790.654018 eV Core-core repulsion = 16886.737676 eV Total energy + Delta-G solvation = -2903.916342 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.82396 -39.81910 -37.52242 -34.98195 -33.33089 -31.59351 -31.25517 -30.55849 -26.88452 -26.39727 -23.57118 -23.06794 -22.30069 -20.90520 -20.12255 -18.76003 -18.55919 -17.70984 -17.47116 -16.81550 -16.15916 -15.53432 -15.38177 -15.21169 -15.07858 -14.93181 -14.56735 -14.30882 -13.66744 -13.44643 -13.13572 -12.84684 -12.75958 -12.50503 -12.34977 -12.02370 -11.87703 -11.58221 -11.26993 -10.99702 -10.88996 -10.77245 -10.67388 -10.51671 -10.02563 -9.62618 -9.11032 -8.25459 -6.26775 -0.61769 0.10989 0.73132 1.31988 1.35226 1.39039 1.47278 2.00453 2.35972 2.65272 3.04342 3.10904 3.79338 3.91101 4.04389 4.10927 4.32801 4.44411 4.48843 4.53972 4.66416 4.77182 4.79628 4.82698 4.90493 5.05982 5.12544 5.16903 5.21276 5.51254 5.53135 5.70635 5.78188 5.95966 6.34705 6.41387 6.52958 6.60229 6.80491 7.37880 7.42307 8.92082 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.030504 B = 0.004812 C = 0.004723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.690140 B = 5817.259338 C = 5927.092154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C 0.008 3.992 3 Si 0.952 3.048 4 H -0.275 1.275 5 H -0.300 1.300 6 H -0.243 1.243 7 C -0.511 4.511 8 H 0.028 0.972 9 C 0.017 3.983 10 C -0.084 4.084 11 C -0.101 4.101 12 C 0.090 3.910 13 N -0.590 5.590 14 C 0.468 3.532 15 N -0.820 5.820 16 C -0.011 4.011 17 N -0.448 5.448 18 C 0.009 3.991 19 C -0.272 4.272 20 S 0.222 5.778 21 C -0.104 4.104 22 C -0.102 4.102 23 H 0.263 0.737 24 H 0.021 0.979 25 H 0.047 0.953 26 H 0.041 0.959 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.413 0.587 31 H 0.416 0.584 32 H 0.200 0.800 33 H 0.214 0.786 34 H 0.073 0.927 35 H 0.051 0.949 36 H 0.052 0.948 37 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.483 -7.690 -5.774 27.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.187 4.187 3 Si 0.779 3.221 4 H -0.202 1.202 5 H -0.228 1.228 6 H -0.167 1.167 7 C -0.549 4.549 8 H 0.046 0.954 9 C -0.002 4.002 10 C -0.121 4.121 11 C -0.139 4.139 12 C -0.022 4.022 13 N -0.320 5.320 14 C 0.184 3.816 15 N -0.371 5.371 16 C -0.288 4.288 17 N -0.164 5.164 18 C -0.146 4.146 19 C -0.413 4.413 20 S 0.476 5.524 21 C -0.142 4.142 22 C -0.140 4.140 23 H 0.072 0.928 24 H 0.039 0.961 25 H 0.066 0.934 26 H 0.059 0.941 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.078 0.922 30 H 0.245 0.755 31 H 0.247 0.753 32 H 0.217 0.783 33 H 0.231 0.769 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 23.966 -7.556 -5.049 25.631 hybrid contribution 0.938 0.861 -0.891 1.554 sum 24.904 -6.695 -5.940 26.464 Atomic orbital electron populations 1.70065 1.08206 1.27742 1.53680 1.25879 0.95388 1.02943 0.94525 0.85794 0.79307 0.78756 0.78220 1.20157 1.22785 1.16657 1.21470 0.92025 0.92595 1.48807 0.95363 1.19080 0.92897 0.94638 0.93547 1.21168 0.94610 0.96489 0.99867 1.21618 0.95850 0.99954 0.96449 1.21764 0.96572 0.93629 0.90208 1.72332 1.32075 1.19624 1.07944 1.19429 0.82677 0.90820 0.88721 1.41868 1.12187 1.66057 1.16983 1.27180 0.97921 1.09167 0.94485 1.66960 1.00023 1.14219 1.35208 1.22151 0.94936 1.03278 0.94188 1.27194 1.05013 1.09036 1.00011 1.84350 0.96720 1.59791 1.11503 1.21573 0.96000 0.95545 1.01130 1.21625 0.94573 0.97624 1.00134 0.92805 0.96119 0.93416 0.94059 0.91432 0.90367 0.92175 0.75481 0.75279 0.78307 0.76882 0.90874 0.92985 0.92944 0.95919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.56 13.96 21.45 0.30 -62.26 16 2 C 0.01 0.52 5.45 84.65 0.46 0.98 16 3 Si 0.95 47.75 24.37 68.60 1.67 49.42 16 4 H -0.27 -13.44 6.87 99.48 0.68 -12.75 16 5 H -0.30 -14.85 7.11 99.48 0.71 -14.15 16 6 H -0.24 -11.16 6.53 99.48 0.65 -10.51 16 7 C -0.51 -30.79 9.14 25.60 0.23 -30.55 16 8 H 0.03 1.88 7.99 -2.91 -0.02 1.86 16 9 C 0.02 0.84 1.69 -11.54 -0.02 0.82 16 10 C -0.08 -3.50 4.99 30.60 0.15 -3.35 16 11 C -0.10 -3.21 5.53 30.60 0.17 -3.04 16 12 C 0.09 2.84 2.46 44.99 0.11 2.95 16 13 N -0.59 -19.36 8.69 -318.72 -2.77 -22.13 16 14 C 0.47 12.61 7.97 136.24 1.09 13.69 16 15 N -0.82 -17.34 9.03 -51.35 -0.46 -17.80 16 16 C -0.01 -0.25 6.36 87.36 0.56 0.31 16 17 N -0.45 -9.86 10.66 -190.14 -2.03 -11.89 16 18 C 0.01 0.15 11.24 83.83 0.94 1.09 16 19 C -0.27 -3.57 11.07 66.84 0.74 -2.83 16 20 S 0.22 4.03 19.95 -56.49 -1.13 2.90 16 21 C -0.10 -3.75 5.63 30.58 0.17 -3.58 16 22 C -0.10 -4.63 4.53 30.58 0.14 -4.49 16 23 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 24 H 0.02 1.01 7.20 -2.39 -0.02 0.99 16 25 H 0.05 2.15 7.60 -2.39 -0.02 2.13 16 26 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.06 1.63 3.99 -16.23 -0.06 1.57 16 30 H 0.41 8.50 8.95 -92.71 -0.83 7.67 16 31 H 0.42 6.82 8.86 -92.71 -0.82 6.00 16 32 H 0.20 1.95 8.06 -2.91 -0.02 1.92 16 33 H 0.21 1.24 8.06 -2.91 -0.02 1.22 16 34 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 36 H 0.05 2.55 7.60 -2.39 -0.02 2.53 16 37 H 0.02 1.08 3.27 -2.39 -0.01 1.07 16 Total: -1.00 -74.55 303.82 -0.35 -74.90 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -0.67 Total: 14.86 kcal Atomic # 6 Polarization: -32.74 SS G_CDS: 4.74 Total: -28.00 kcal Atomic # 7 Polarization: -109.12 SS G_CDS: -4.96 Total: -114.08 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 1.67 Total: 49.42 kcal Atomic # 16 Polarization: 4.03 SS G_CDS: -1.13 Total: 2.90 kcal Total: -74.55 -0.35 -74.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329436.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.436 kcal (2) G-P(sol) polarization free energy of solvation -74.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds