Wall clock time and date at job start Wed Apr 15 2020 11:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34156 * 126.01211 * 2 1 4 4 H 0.96994 * 125.03190 * 0.02562 * 3 2 1 5 5 N 1.39953 * 109.93836 * 179.97438 * 3 2 1 6 6 C 1.32257 * 108.88636 * 359.97438 * 5 3 2 7 7 C 1.40778 * 134.47933 * 180.02562 * 6 5 3 8 8 C 1.38269 * 119.38731 * 180.02562 * 7 6 5 9 9 C 1.47753 * 119.35158 * 179.97438 * 8 7 6 10 10 C 1.40004 * 119.45826 * 179.97438 * 9 8 7 11 11 C 1.36533 * 119.46276 * 179.76045 * 10 9 8 12 12 C 1.41334 * 118.42083 * 0.50167 * 11 10 9 13 13 C 1.40993 * 120.54566 * 179.77606 * 12 11 10 14 14 H 1.07993 * 119.99841 * 25.32382 * 13 12 11 15 15 C 1.39962 * 119.99605 * 205.32624 * 13 12 11 16 16 N 1.30833 * 119.99583 * 204.35727 * 15 13 12 17 17 Si 1.86797 * 120.00486 * 24.35402 * 15 13 12 18 18 H 1.48508 * 109.46983 * 263.56074 * 17 15 13 19 19 H 1.48497 * 109.47001 * 23.55765 * 17 15 13 20 20 H 1.48497 * 109.47292 * 143.56346 * 17 15 13 21 21 C 1.40987 * 118.90938 * 359.49775 * 12 11 10 22 22 N 1.31217 * 120.40493 * 0.25704 * 21 12 11 23 23 C 1.40934 * 121.29704 * 0.27567 * 8 7 6 24 24 C 1.35235 * 121.58254 * 359.40373 * 23 8 7 25 25 C 1.38088 * 126.01551 * 179.97438 * 2 1 3 26 26 H 1.09004 * 109.46594 * 89.97800 * 1 2 3 27 27 H 1.08998 * 109.46904 * 209.97441 * 1 2 3 28 28 H 1.08996 * 109.47416 * 329.98419 * 1 2 3 29 29 H 1.08004 * 120.30371 * 359.97438 * 7 6 5 30 30 H 1.08002 * 120.27244 * 0.04423 * 10 9 8 31 31 H 1.08004 * 120.79007 * 180.25639 * 11 10 9 32 32 H 0.96994 * 119.99912 * 353.05244 * 16 15 13 33 33 H 1.07996 * 119.79955 * 180.22915 * 21 12 11 34 34 H 1.07998 * 119.20768 * 179.70627 * 23 8 7 35 35 H 1.08003 * 120.05369 * 180.29167 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2958 1.0852 0.0000 4 1 1.9807 2.0025 0.0004 5 7 3.6406 0.6977 0.0006 6 6 3.7055 -0.6233 0.0015 7 6 4.7571 -1.5592 0.0029 8 6 4.4631 -2.9102 0.0030 9 6 5.5674 -3.8918 0.0039 10 6 5.2722 -5.2604 0.0046 11 6 6.2926 -6.1675 0.0004 12 6 7.6212 -5.6854 0.0063 13 6 8.7090 -6.5825 0.0071 14 1 8.5890 -7.5770 -0.3965 15 6 9.9442 -6.1841 0.5310 16 7 11.0436 -6.7703 0.1319 17 14 10.0230 -4.8154 1.7998 18 1 10.3300 -3.5298 1.1227 19 1 8.7150 -4.7088 2.4947 20 1 11.0866 -5.1194 2.7904 21 6 7.8410 -4.2928 0.0055 22 7 6.8266 -3.4604 0.0044 23 6 3.1307 -3.3695 -0.0039 24 6 2.0856 -2.5112 0.0010 25 6 2.3190 -1.1169 0.0005 26 1 -0.3633 0.0004 -1.0277 27 1 -0.3633 -0.8902 0.5134 28 1 -0.3634 0.8898 0.5140 29 1 5.7841 -1.2249 0.0029 30 1 4.2456 -5.5959 0.0038 31 1 6.0894 -7.2282 -0.0033 32 1 10.9965 -7.5458 -0.4488 33 1 8.8503 -3.9087 0.0062 34 1 2.9396 -4.4324 -0.0084 35 1 1.0743 -2.8903 0.0002 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241636934.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:01 Heat of formation + Delta-G solvation = 84.396404 kcal Electronic energy + Delta-G solvation = -19842.318600 eV Core-core repulsion = 16804.817059 eV Total energy + Delta-G solvation = -3037.501541 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.18283 -40.59371 -38.01626 -36.02247 -34.00480 -33.34821 -32.90437 -30.98572 -30.79980 -27.71800 -27.20150 -24.97216 -24.01363 -22.84272 -21.94480 -20.79265 -20.36669 -18.59055 -17.91819 -17.45672 -16.92573 -16.08302 -16.05372 -15.97956 -15.41499 -15.07504 -14.72490 -14.64547 -14.33354 -14.12411 -13.67264 -13.62373 -13.25573 -12.97759 -12.87226 -12.60619 -12.57149 -12.30435 -12.11257 -11.77653 -11.20027 -11.13938 -11.02733 -10.52884 -10.22074 -9.99067 -9.57108 -9.08131 -8.45196 -6.65661 -0.43600 0.39268 0.78809 1.07727 1.34343 1.47045 1.57910 1.69325 1.87951 2.05556 2.48656 2.99082 3.37369 3.56432 3.60058 3.69889 4.07288 4.14971 4.27279 4.37709 4.38905 4.62876 4.66532 4.76201 4.80410 4.88312 4.89810 5.04651 5.16038 5.25344 5.33276 5.43054 5.49742 5.59482 5.66526 5.79439 5.90904 6.03056 6.12273 6.34781 6.38802 6.54042 6.68103 7.51899 7.79210 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.035804 B = 0.003871 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.855726 B = 7231.065365 C = 7823.018486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.138 3.862 3 N -0.421 5.421 4 H 0.455 0.545 5 N -0.365 5.365 6 C 0.093 3.907 7 C -0.145 4.145 8 C 0.039 3.961 9 C -0.010 4.010 10 C -0.093 4.093 11 C -0.196 4.196 12 C 0.035 3.965 13 C -0.512 4.512 14 H 0.070 0.930 15 C 0.023 3.977 16 N -0.809 5.809 17 Si 1.093 2.907 18 H -0.264 1.264 19 H -0.274 1.274 20 H -0.264 1.264 21 C -0.052 4.052 22 N -0.455 5.455 23 C -0.166 4.166 24 C -0.021 4.021 25 C -0.240 4.240 26 H 0.105 0.895 27 H 0.106 0.894 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.156 0.844 31 H 0.128 0.872 32 H 0.289 0.711 33 H 0.129 0.871 34 H 0.146 0.854 35 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.350 9.357 1.067 24.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.002 4.002 3 N -0.123 5.123 4 H 0.302 0.698 5 N -0.195 5.195 6 C -0.058 4.058 7 C -0.168 4.168 8 C 0.034 3.966 9 C -0.145 4.145 10 C -0.112 4.112 11 C -0.221 4.221 12 C 0.030 3.970 13 C -0.540 4.540 14 H 0.088 0.912 15 C -0.197 4.197 16 N -0.430 5.430 17 Si 0.915 3.085 18 H -0.190 1.190 19 H -0.199 1.199 20 H -0.190 1.190 21 C -0.215 4.215 22 N -0.163 5.163 23 C -0.186 4.186 24 C -0.041 4.041 25 C -0.250 4.250 26 H 0.124 0.876 27 H 0.124 0.876 28 H 0.118 0.882 29 H 0.121 0.879 30 H 0.173 0.827 31 H 0.146 0.854 32 H 0.101 0.899 33 H 0.146 0.854 34 H 0.164 0.836 35 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -20.334 12.199 1.869 23.786 hybrid contribution -0.485 -2.373 -1.212 2.709 sum -20.819 9.826 0.656 23.031 Atomic orbital electron populations 1.20794 0.82087 1.06401 1.05591 1.21972 0.96206 0.85758 0.96270 1.46319 1.03712 1.09687 1.52602 0.69783 1.77690 0.95090 1.12202 1.34496 1.20900 0.95354 0.91174 0.98388 1.20018 0.96418 0.91097 1.09241 1.18453 0.92505 0.90790 0.94881 1.19537 0.89834 0.91845 1.13324 1.21698 1.00400 0.92386 0.96739 1.21353 0.91946 0.99704 1.09123 1.18887 0.94507 0.93486 0.90122 1.20648 0.96548 1.00979 1.35818 0.91202 1.28118 0.90660 1.02890 0.98000 1.70556 1.30412 1.16552 1.25458 0.83303 0.77329 0.73202 0.74694 1.18985 1.19866 1.18991 1.22478 0.96459 0.90053 1.12537 1.67003 1.00126 1.40730 1.08413 1.20767 0.90055 1.01246 1.06539 1.20470 1.00034 0.88918 0.94702 1.19787 0.91257 0.95611 1.18318 0.87637 0.87579 0.88152 0.87870 0.82694 0.85377 0.89907 0.85366 0.83595 0.81340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.52 10.44 71.24 0.74 0.22 16 2 C 0.14 2.55 7.27 42.17 0.31 2.85 16 3 N -0.42 -8.93 7.19 -46.82 -0.34 -9.27 16 4 H 0.45 5.55 8.96 -213.42 -1.91 3.64 16 5 N -0.37 -12.39 12.71 -48.81 -0.62 -13.01 16 6 C 0.09 3.40 7.47 42.05 0.31 3.71 16 7 C -0.14 -6.06 9.63 22.90 0.22 -5.84 16 8 C 0.04 1.53 5.87 -20.09 -0.12 1.42 16 9 C -0.01 -0.46 6.73 41.90 0.28 -0.18 16 10 C -0.09 -3.76 9.36 22.30 0.21 -3.55 16 11 C -0.20 -8.81 9.87 22.63 0.22 -8.59 16 12 C 0.03 1.79 5.17 -21.17 -0.11 1.68 16 13 C -0.51 -27.08 9.40 23.36 0.22 -26.86 16 14 H 0.07 3.76 8.06 -2.91 -0.02 3.73 16 15 C 0.02 1.18 5.34 85.26 0.45 1.63 16 16 N -0.81 -42.16 13.65 21.83 0.30 -41.86 16 17 Si 1.09 49.24 25.01 68.60 1.72 50.95 16 18 H -0.26 -11.60 6.66 99.48 0.66 -10.94 16 19 H -0.27 -12.73 7.03 99.48 0.70 -12.03 16 20 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 21 C -0.05 -2.72 8.58 85.46 0.73 -1.98 16 22 N -0.46 -23.24 9.29 -182.77 -1.70 -24.94 16 23 C -0.17 -4.90 9.26 22.24 0.21 -4.70 16 24 C -0.02 -0.51 10.06 22.35 0.22 -0.28 16 25 C -0.24 -6.52 6.25 -20.20 -0.13 -6.64 16 26 H 0.11 0.32 8.14 -2.38 -0.02 0.30 16 27 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.10 0.13 8.14 -2.39 -0.02 0.11 16 29 H 0.10 4.81 7.44 -2.91 -0.02 4.79 16 30 H 0.16 4.76 6.05 -2.91 -0.02 4.74 16 31 H 0.13 5.15 8.06 -2.91 -0.02 5.12 16 32 H 0.29 14.64 8.73 -92.71 -0.81 13.84 16 33 H 0.13 6.65 4.65 -2.91 -0.01 6.64 16 34 H 0.15 3.50 6.01 -2.91 -0.02 3.48 16 35 H 0.17 2.24 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -71.76 299.79 2.29 -69.47 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -0.85 Total: 15.76 kcal Atomic # 6 Polarization: -50.88 SS G_CDS: 3.78 Total: -47.10 kcal Atomic # 7 Polarization: -86.72 SS G_CDS: -2.36 Total: -89.08 kcal Atomic # 14 Polarization: 49.24 SS G_CDS: 1.72 Total: 50.95 kcal Total: -71.76 2.29 -69.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241636934.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.865 kcal (2) G-P(sol) polarization free energy of solvation -71.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds